EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000001499 (Gene tree)
Gene ID: 100933809
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 27793 bases
Position: chrGL842194.1:12170-39962
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000001682	TUDOR	PF00567.24	1.4e-05	1	1
ENSSHAP00000001683	TUDOR	PF00567.24	1.7e-05	1	1
ENSSHAP00000001683	SMN	PF06003.12	2.9e-122	1	1
ENSSHAP00000001682	SMN	PF06003.12	8.5e-122	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000001700	-	891	-	ENSSHAP00000001683	295 (aa)	-	G3VES9
ENSSHAT00000001699	-	991	-	ENSSHAP00000001682	269 (aa)	-	G3VES8

Gene Model

Click here to download ENSSHAG00000001499's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000001499's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000001499	-	96	69.145	ENSG00000172062	SMN1	99	66.894	Homo_sapiens
ENSSHAG00000001499	-	96	69.145	ENSG00000205571	SMN2	99	66.894	Homo_sapiens
ENSSHAG00000001499	-	98	44.643	ENSAPOG00000011324	smn1	94	55.515	Acanthochromis_polyacanthus
ENSSHAG00000001499	-	100	69.675	ENSAMEG00000003316	-	99	69.435	Ailuropoda_melanoleuca
ENSSHAG00000001499	-	94	49.425	ENSACIG00000019772	-	97	51.724	Amphilophus_citrinellus
ENSSHAG00000001499	-	98	46.840	ENSAOCG00000024444	smn1	94	55.147	Amphiprion_ocellaris
ENSSHAG00000001499	-	98	49.259	ENSAPEG00000016504	smn1	94	55.515	Amphiprion_percula
ENSSHAG00000001499	-	96	48.708	ENSATEG00000002182	smn1	80	54.074	Anabas_testudineus
ENSSHAG00000001499	-	72	62.000	ENSAPLG00000010912	-	97	62.755	Anas_platyrhynchos
ENSSHAG00000001499	-	96	67.293	ENSACAG00000010017	-	99	63.194	Anolis_carolinensis
ENSSHAG00000001499	-	99	67.742	ENSANAG00000032133	-	99	68.243	Aotus_nancymaae
ENSSHAG00000001499	-	95	51.538	ENSACLG00000007308	smn1	90	53.704	Astatotilapia_calliptera
ENSSHAG00000001499	-	100	67.391	ENSBTAG00000005743	SMN2	100	68.966	Bos_taurus
ENSSHAG00000001499	-	96	70.370	ENSCJAG00000016290	-	99	68.027	Callithrix_jacchus
ENSSHAG00000001499	-	100	70.036	ENSCAFG00000007812	SMN	100	70.205	Canis_familiaris
ENSSHAG00000001499	-	97	72.015	ENSCAFG00020019229	-	93	70.103	Canis_lupus_dingo
ENSSHAG00000001499	-	100	66.906	ENSCHIG00000015559	-	97	69.097	Capra_hircus
ENSSHAG00000001499	-	96	69.663	ENSTSYG00000012058	-	90	80.000	Carlito_syrichta
ENSSHAG00000001499	-	75	59.512	ENSCAPG00000011021	-	84	54.589	Cavia_aperea
ENSSHAG00000001499	-	100	64.769	ENSCPOG00000012328	-	100	65.657	Cavia_porcellus
ENSSHAG00000001499	-	100	64.982	ENSCPOG00000036973	-	99	65.870	Cavia_porcellus
ENSSHAG00000001499	-	96	69.403	ENSCCAG00000018127	-	99	67.123	Cebus_capucinus
ENSSHAG00000001499	-	96	70.260	ENSCATG00000037002	-	99	67.918	Cercocebus_atys
ENSSHAG00000001499	-	100	64.875	ENSCLAG00000000284	-	97	67.128	Chinchilla_lanigera
ENSSHAG00000001499	-	96	70.149	ENSCSAG00000015688	-	99	68.942	Chlorocebus_sabaeus
ENSSHAG00000001499	-	91	64.173	ENSCHOG00000007346	-	76	91.667	Choloepus_hoffmanni
ENSSHAG00000001499	-	98	70.566	ENSCPBG00000010968	-	96	71.484	Chrysemys_picta_bellii
ENSSHAG00000001499	-	96	71.910	ENSCANG00000038242	-	99	69.784	Colobus_angolensis_palliatus
ENSSHAG00000001499	-	92	65.370	ENSCANG00000033324	-	92	65.818	Colobus_angolensis_palliatus
ENSSHAG00000001499	-	100	64.130	ENSCGRG00001017959	-	100	65.753	Cricetulus_griseus_chok1gshd
ENSSHAG00000001499	-	95	52.431	ENSCGRG00001016998	-	99	52.265	Cricetulus_griseus_chok1gshd
ENSSHAG00000001499	-	100	64.130	ENSCGRG00000007698	Smn1	100	65.753	Cricetulus_griseus_crigri
ENSSHAG00000001499	-	97	48.364	ENSCSEG00000015227	smn1	96	49.643	Cynoglossus_semilaevis
ENSSHAG00000001499	-	89	47.312	ENSCVAG00000007498	smn1	94	49.648	Cyprinodon_variegatus
ENSSHAG00000001499	-	97	52.206	ENSDARG00000018494	smn1	95	56.827	Danio_rerio
ENSSHAG00000001499	-	76	56.957	ENSDNOG00000045949	-	97	56.522	Dasypus_novemcinctus
ENSSHAG00000001499	-	87	68.595	ENSDNOG00000007283	-	99	67.220	Dasypus_novemcinctus
ENSSHAG00000001499	-	94	63.604	ENSDORG00000007082	Smn1	100	60.884	Dipodomys_ordii
ENSSHAG00000001499	-	66	61.026	ENSETEG00000001406	-	93	61.026	Echinops_telfairi
ENSSHAG00000001499	-	96	41.611	ENSEBUG00000011902	smn1	93	40.892	Eptatretus_burgeri
ENSSHAG00000001499	-	93	67.308	ENSEASG00005018000	-	96	64.130	Equus_asinus_asinus
ENSSHAG00000001499	-	100	69.784	ENSECAG00000015215	-	100	70.307	Equus_caballus
ENSSHAG00000001499	-	91	67.857	ENSEEUG00000015777	-	100	66.534	Erinaceus_europaeus
ENSSHAG00000001499	-	99	53.986	ENSELUG00000018067	smn1	96	52.536	Esox_lucius
ENSSHAG00000001499	-	97	69.517	ENSFCAG00000028292	SMN	91	80.000	Felis_catus
ENSSHAG00000001499	-	96	69.697	ENSFALG00000012320	-	94	66.288	Ficedula_albicollis
ENSSHAG00000001499	-	100	66.548	ENSFDAG00000017683	-	97	68.621	Fukomys_damarensis
ENSSHAG00000001499	-	97	51.471	ENSFHEG00000018508	smn1	96	54.545	Fundulus_heteroclitus
ENSSHAG00000001499	-	97	51.880	ENSGMOG00000017279	smn1	95	55.311	Gadus_morhua
ENSSHAG00000001499	-	98	67.547	ENSGALG00000002430	SMN	95	66.667	Gallus_gallus
ENSSHAG00000001499	-	98	52.747	ENSGAFG00000009501	smn1	96	51.557	Gambusia_affinis
ENSSHAG00000001499	-	98	48.669	ENSGACG00000010584	smn1	91	55.224	Gasterosteus_aculeatus
ENSSHAG00000001499	-	95	72.868	ENSGAGG00000011374	-	96	70.251	Gopherus_agassizii
ENSSHAG00000001499	-	89	38.776	ENSGAGG00000013639	-	90	39.378	Gopherus_agassizii
ENSSHAG00000001499	-	63	69.519	ENSGGOG00000026704	-	91	65.816	Gorilla_gorilla
ENSSHAG00000001499	-	91	63.710	ENSGGOG00000003872	-	99	60.662	Gorilla_gorilla
ENSSHAG00000001499	-	97	48.889	ENSHBUG00000013987	smn1	96	54.676	Haplochromis_burtoni
ENSSHAG00000001499	-	97	66.667	ENSHGLG00000001905	-	100	65.035	Heterocephalus_glaber_female
ENSSHAG00000001499	-	100	65.714	ENSHGLG00000001018	-	97	67.128	Heterocephalus_glaber_female
ENSSHAG00000001499	-	93	66.275	ENSHGLG00100018676	-	100	64.599	Heterocephalus_glaber_male
ENSSHAG00000001499	-	100	65.714	ENSHGLG00100011252	-	97	67.128	Heterocephalus_glaber_male
ENSSHAG00000001499	-	91	46.538	ENSHCOG00000017136	smn1	87	52.612	Hippocampus_comes
ENSSHAG00000001499	-	97	49.077	ENSIPUG00000012580	smn1	83	52.239	Ictalurus_punctatus
ENSSHAG00000001499	-	91	69.170	ENSSTOG00000012288	-	100	64.029	Ictidomys_tridecemlineatus
ENSSHAG00000001499	-	63	56.213	ENSJJAG00000014853	-	89	57.386	Jaculus_jaculus
ENSSHAG00000001499	-	98	47.653	ENSKMAG00000007239	smn1	96	52.222	Kryptolebias_marmoratus
ENSSHAG00000001499	-	98	52.899	ENSLBEG00000022550	smn1	94	53.405	Labrus_bergylta
ENSSHAG00000001499	-	94	38.951	ENSLACG00000009808	-	95	36.120	Latimeria_chalumnae
ENSSHAG00000001499	-	96	32.841	ENSLOCG00000000801	-	90	30.070	Lepisosteus_oculatus
ENSSHAG00000001499	-	97	53.285	ENSLOCG00000011339	smn1	94	56.044	Lepisosteus_oculatus
ENSSHAG00000001499	-	100	69.065	ENSLAFG00000003425	-	97	70.408	Loxodonta_africana
ENSSHAG00000001499	-	97	70.480	ENSMFAG00000031523	SMN1	99	68.601	Macaca_fascicularis
ENSSHAG00000001499	-	99	65.343	ENSMFAG00000008812	-	99	64.846	Macaca_fascicularis
ENSSHAG00000001499	-	96	71.004	ENSMMUG00000020214	SMN1	99	68.601	Macaca_mulatta
ENSSHAG00000001499	-	99	64.621	ENSMMUG00000030594	-	99	64.164	Macaca_mulatta
ENSSHAG00000001499	-	78	58.716	ENSMNEG00000036423	-	80	60.096	Macaca_nemestrina
ENSSHAG00000001499	-	95	71.429	ENSMNEG00000035094	-	99	68.440	Macaca_nemestrina
ENSSHAG00000001499	-	96	71.375	ENSMLEG00000041902	-	99	68.601	Mandrillus_leucophaeus
ENSSHAG00000001499	-	97	50.365	ENSMAMG00000011034	smn1	96	52.982	Mastacembelus_armatus
ENSSHAG00000001499	-	97	48.889	ENSMZEG00005013634	smn1	97	54.122	Maylandia_zebra
ENSSHAG00000001499	-	71	65.104	ENSMGAG00000008889	-	95	62.437	Meleagris_gallopavo
ENSSHAG00000001499	-	100	62.681	ENSMAUG00000010262	Smn1	100	64.041	Mesocricetus_auratus
ENSSHAG00000001499	-	81	64.912	ENSMICG00000034708	-	90	76.471	Microcebus_murinus
ENSSHAG00000001499	-	100	64.621	ENSMOCG00000017833	Smn1	100	66.212	Microtus_ochrogaster
ENSSHAG00000001499	-	97	47.710	ENSMMOG00000005504	smn1	96	50.545	Mola_mola
ENSSHAG00000001499	-	100	93.309	ENSMODG00000001436	-	99	96.140	Monodelphis_domestica
ENSSHAG00000001499	-	97	46.520	ENSMALG00000008025	smn1	96	52.465	Monopterus_albus
ENSSHAG00000001499	-	100	63.177	MGP_CAROLIEiJ_G0018836	Smn1	100	65.529	Mus_caroli
ENSSHAG00000001499	-	100	63.177	ENSMUSG00000021645	Smn1	100	65.188	Mus_musculus
ENSSHAG00000001499	-	100	61.818	MGP_PahariEiJ_G0015911	Smn1	100	63.230	Mus_pahari
ENSSHAG00000001499	-	100	62.816	MGP_SPRETEiJ_G0019718	Smn1	100	64.846	Mus_spretus
ENSSHAG00000001499	-	96	69.173	ENSMPUG00000014470	-	99	69.751	Mustela_putorius_furo
ENSSHAG00000001499	-	100	66.667	ENSMLUG00000010603	-	97	66.997	Myotis_lucifugus
ENSSHAG00000001499	-	97	68.030	ENSNGAG00000019833	Smn1	100	67.235	Nannospalax_galili
ENSSHAG00000001499	-	97	50.741	ENSNBRG00000023000	smn1	96	55.160	Neolamprologus_brichardi
ENSSHAG00000001499	-	96	69.145	ENSNLEG00000004454	-	99	66.894	Nomascus_leucogenys
ENSSHAG00000001499	-	82	92.308	ENSMEUG00000011393	-	100	92.308	Notamacropus_eugenii
ENSSHAG00000001499	-	91	69.020	ENSOPRG00000002015	-	100	68.504	Ochotona_princeps
ENSSHAG00000001499	-	94	66.160	ENSODEG00000015976	-	95	67.647	Octodon_degus
ENSSHAG00000001499	-	97	50.549	ENSONIG00000011799	smn1	95	56.250	Oreochromis_niloticus
ENSSHAG00000001499	-	99	74.170	ENSOANG00000001626	-	99	75.874	Ornithorhynchus_anatinus
ENSSHAG00000001499	-	99	67.033	ENSOCUG00000026649	-	99	68.942	Oryctolagus_cuniculus
ENSSHAG00000001499	-	97	61.279	ENSOCUG00000025183	-	100	61.279	Oryctolagus_cuniculus
ENSSHAG00000001499	-	100	69.259	ENSOCUG00000017097	-	99	70.280	Oryctolagus_cuniculus
ENSSHAG00000001499	-	57	60.000	ENSORLG00000010552	smn1	96	54.225	Oryzias_latipes
ENSSHAG00000001499	-	98	53.030	ENSORLG00020007936	smn1	96	52.555	Oryzias_latipes_hni
ENSSHAG00000001499	-	58	55.696	ENSORLG00015022425	smn1	96	53.873	Oryzias_latipes_hsok
ENSSHAG00000001499	-	55	56.757	ENSOMEG00000007824	smn1	94	54.579	Oryzias_melastigma
ENSSHAG00000001499	-	94	60.448	ENSOGAG00000031414	-	95	62.455	Otolemur_garnettii
ENSSHAG00000001499	-	97	69.145	ENSOARG00000005425	-	100	67.754	Ovis_aries
ENSSHAG00000001499	-	96	69.145	ENSPPAG00000036640	-	99	66.894	Pan_paniscus
ENSSHAG00000001499	-	97	69.888	ENSPPRG00000005575	-	91	80.000	Panthera_pardus
ENSSHAG00000001499	-	97	69.630	ENSPTIG00000007745	-	91	80.000	Panthera_tigris_altaica
ENSSHAG00000001499	-	96	68.382	ENSPTRG00000016955	-	99	66.216	Pan_troglodytes
ENSSHAG00000001499	-	96	71.004	ENSPANG00000013601	-	99	68.601	Papio_anubis
ENSSHAG00000001499	-	99	65.704	ENSPANG00000000253	-	98	65.529	Papio_anubis
ENSSHAG00000001499	-	97	52.190	ENSPKIG00000011096	smn1	94	51.673	Paramormyrops_kingsleyae
ENSSHAG00000001499	-	95	69.767	ENSPSIG00000014787	-	87	66.296	Pelodiscus_sinensis
ENSSHAG00000001499	-	99	48.929	ENSPMGG00000012285	smn1	94	53.612	Periophthalmus_magnuspinnatus
ENSSHAG00000001499	-	95	43.511	ENSPMAG00000005004	smn1	57	41.520	Petromyzon_marinus
ENSSHAG00000001499	-	100	94.796	ENSPCIG00000025764	-	100	97.880	Phascolarctos_cinereus
ENSSHAG00000001499	-	98	52.747	ENSPFOG00000007786	smn1	96	51.557	Poecilia_formosa
ENSSHAG00000001499	-	98	53.114	ENSPLAG00000012071	smn1	96	51.903	Poecilia_latipinna
ENSSHAG00000001499	-	98	52.747	ENSPMEG00000017085	smn1	96	51.557	Poecilia_mexicana
ENSSHAG00000001499	-	98	53.480	ENSPREG00000005824	smn1	96	52.595	Poecilia_reticulata
ENSSHAG00000001499	-	91	46.721	ENSPPYG00000019189	-	99	43.443	Pongo_abelii
ENSSHAG00000001499	-	97	68.635	ENSPPYG00000015533	-	97	67.407	Pongo_abelii
ENSSHAG00000001499	-	97	69.030	ENSPCAG00000004187	-	100	69.776	Procavia_capensis
ENSSHAG00000001499	-	69	66.845	ENSPCOG00000022307	-	100	52.941	Propithecus_coquereli
ENSSHAG00000001499	-	97	71.642	ENSPVAG00000005977	-	99	68.836	Pteropus_vampyrus
ENSSHAG00000001499	-	97	50.741	ENSPNYG00000014148	smn1	96	55.160	Pundamilia_nyererei
ENSSHAG00000001499	-	98	50.554	ENSPNAG00000014007	smn1	88	49.653	Pygocentrus_nattereri
ENSSHAG00000001499	-	98	64.945	ENSRNOG00000018067	Smn1	98	66.202	Rattus_norvegicus
ENSSHAG00000001499	-	95	60.465	ENSRBIG00000036775	-	92	59.854	Rhinopithecus_bieti
ENSSHAG00000001499	-	96	71.375	ENSRBIG00000037052	-	99	68.942	Rhinopithecus_bieti
ENSSHAG00000001499	-	99	58.519	ENSRROG00000031088	-	96	58.392	Rhinopithecus_roxellana
ENSSHAG00000001499	-	96	71.375	ENSRROG00000039399	-	99	68.942	Rhinopithecus_roxellana
ENSSHAG00000001499	-	96	70.677	ENSSBOG00000011665	-	99	68.276	Saimiri_boliviensis_boliviensis
ENSSHAG00000001499	-	90	64.615	ENSSBOG00000020112	-	97	60.000	Saimiri_boliviensis_boliviensis
ENSSHAG00000001499	-	98	54.307	ENSSFOG00015015507	smn1	94	57.934	Scleropages_formosus
ENSSHAG00000001499	-	98	50.562	ENSSMAG00000007922	smn1	97	52.650	Scophthalmus_maximus
ENSSHAG00000001499	-	98	46.403	ENSSDUG00000018533	smn1	96	54.386	Seriola_dumerili
ENSSHAG00000001499	-	98	46.763	ENSSLDG00000021135	smn1	96	54.737	Seriola_lalandi_dorsalis
ENSSHAG00000001499	-	95	70.930	ENSSPUG00000000373	-	96	69.065	Sphenodon_punctatus
ENSSHAG00000001499	-	98	48.327	ENSSPAG00000004345	smn1	94	56.410	Stegastes_partitus
ENSSHAG00000001499	-	97	53.640	ENSSSCG00000029127	-	96	55.000	Sus_scrofa
ENSSHAG00000001499	-	77	51.429	ENSSSCG00000033865	-	92	53.234	Sus_scrofa
ENSSHAG00000001499	-	97	70.149	ENSSSCG00000016970	-	100	69.831	Sus_scrofa
ENSSHAG00000001499	-	94	61.940	ENSTGUG00000001548	-	99	60.140	Taeniopygia_guttata
ENSSHAG00000001499	-	97	47.407	ENSTRUG00000000736	smn	96	45.583	Takifugu_rubripes
ENSSHAG00000001499	-	98	44.604	ENSTNIG00000009892	smn1	96	51.957	Tetraodon_nigroviridis
ENSSHAG00000001499	-	63	71.658	ENSTBEG00000002399	-	93	69.231	Tupaia_belangeri
ENSSHAG00000001499	-	97	71.429	ENSTTRG00000005080	-	100	68.942	Tursiops_truncatus
ENSSHAG00000001499	-	63	70.968	ENSUAMG00000024947	-	71	69.231	Ursus_americanus
ENSSHAG00000001499	-	97	71.747	ENSUMAG00000007842	-	75	70.648	Ursus_maritimus
ENSSHAG00000001499	-	94	58.238	ENSVPAG00000009887	-	97	60.000	Vicugna_pacos
ENSSHAG00000001499	-	100	70.036	ENSVVUG00000006934	-	100	70.205	Vulpes_vulpes
ENSSHAG00000001499	-	96	35.145	ENSXETG00000004912	-	80	62.712	Xenopus_tropicalis
ENSSHAG00000001499	-	97	60.300	ENSXETG00000018189	smn2	97	58.947	Xenopus_tropicalis
ENSSHAG00000001499	-	98	53.114	ENSXMAG00000001521	smn1	95	53.025	Xiphophorus_maculatus