EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000002972 (Gene tree)
Gene ID: 105751110
Gene Symbol: -
Alias: -
Full Name: U1 small nuclear ribonucleoprotein C
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 417 bases
Position: chrGL867677.1:47220-47636
Accession: 105751110
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000003382	zf-U1	PF06220.12	1.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000003418	-	417	-	ENSSHAP00000003382	138 (aa)	XP_023362970	G3VJM7

Gene Model

Click here to download ENSSHAG00000002972's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000002972's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000002972	-	100	75.472	ENSG00000124562	SNRPC	100	65.254	Homo_sapiens
ENSSHAG00000002972	-	100	66.667	ENSANAG00000021026	-	100	65.333	Aotus_nancymaae
ENSSHAG00000002972	-	100	65.625	ENSAMXG00000032641	snrpc	60	70.455	Astyanax_mexicanus
ENSSHAG00000002972	-	93	65.625	ENSCAFG00000001231	-	61	89.610	Canis_familiaris
ENSSHAG00000002972	-	98	48.077	ENSCCAG00000022209	-	95	53.846	Cebus_capucinus
ENSSHAG00000002972	-	100	71.739	ENSCCAG00000028293	-	59	84.416	Cebus_capucinus
ENSSHAG00000002972	-	100	57.862	ENSCGRG00001021483	-	100	56.954	Cricetulus_griseus_chok1gshd
ENSSHAG00000002972	-	93	65.625	ENSDNOG00000042403	-	67	89.610	Dasypus_novemcinctus
ENSSHAG00000002972	-	94	75.912	ENSDORG00000029823	-	56	88.312	Dipodomys_ordii
ENSSHAG00000002972	-	58	85.000	ENSETEG00000008756	-	75	84.416	Echinops_telfairi
ENSSHAG00000002972	-	100	60.625	ENSELUG00000000815	SNRPC	50	88.462	Esox_lucius
ENSSHAG00000002972	-	100	61.585	ENSELUG00000020489	snrpc	69	68.807	Esox_lucius
ENSSHAG00000002972	-	100	61.250	ENSHGLG00000017741	-	100	59.615	Heterocephalus_glaber_female
ENSSHAG00000002972	-	78	69.912	ENSHGLG00000005871	-	54	79.221	Heterocephalus_glaber_female
ENSSHAG00000002972	-	100	61.250	ENSHGLG00100010786	-	100	59.615	Heterocephalus_glaber_male
ENSSHAG00000002972	-	100	74.214	ENSMMUG00000000869	-	50	89.610	Macaca_mulatta
ENSSHAG00000002972	-	100	74.214	ENSMMUG00000039415	-	51	88.312	Macaca_mulatta
ENSSHAG00000002972	-	96	66.667	ENSMLEG00000039724	-	81	61.111	Mandrillus_leucophaeus
ENSSHAG00000002972	-	100	81.944	ENSMICG00000009130	-	100	81.250	Microcebus_murinus
ENSSHAG00000002972	-	100	99.275	ENSMODG00000025263	-	100	99.275	Monodelphis_domestica
ENSSHAG00000002972	-	100	66.667	ENSMALG00000001197	snrpc	52	88.158	Monopterus_albus
ENSSHAG00000002972	-	93	65.625	MGP_SPRETEiJ_G0022221	-	64	89.610	Mus_spretus
ENSSHAG00000002972	-	56	87.013	ENSODEG00000006008	-	55	87.013	Octodon_degus
ENSSHAG00000002972	-	88	63.014	ENSOANG00000003405	SNRPC	100	68.243	Ornithorhynchus_anatinus
ENSSHAG00000002972	-	96	63.576	ENSOGAG00000028405	-	99	64.901	Otolemur_garnettii
ENSSHAG00000002972	-	94	47.945	ENSPPRG00000016017	-	60	39.130	Panthera_pardus
ENSSHAG00000002972	-	100	67.391	ENSPPRG00000010967	-	89	67.391	Panthera_pardus
ENSSHAG00000002972	-	100	58.696	ENSPTIG00000011880	-	88	58.696	Panthera_tigris_altaica
ENSSHAG00000002972	-	95	65.649	ENSPTIG00000013329	-	50	75.325	Panthera_tigris_altaica
ENSSHAG00000002972	-	100	63.354	ENSPKIG00000001671	SNRPC	63	67.000	Paramormyrops_kingsleyae
ENSSHAG00000002972	-	69	77.895	ENSPKIG00000003136	snrpc	100	63.226	Paramormyrops_kingsleyae
ENSSHAG00000002972	-	98	65.493	ENSPMGG00000022162	snrpc	50	84.722	Periophthalmus_magnuspinnatus
ENSSHAG00000002972	-	58	90.000	ENSPPYG00000029902	-	78	89.610	Pongo_abelii
ENSSHAG00000002972	-	82	53.030	ENSPNYG00000004900	snrpc	54	77.778	Pundamilia_nyererei
ENSSHAG00000002972	-	100	66.038	ENSPNAG00000012799	snrpc	62	65.957	Pygocentrus_nattereri
ENSSHAG00000002972	-	94	59.603	ENSSBOG00000032361	-	51	68.831	Saimiri_boliviensis_boliviensis
ENSSHAG00000002972	-	67	77.419	ENSSFOG00015022422	snrpc	95	60.811	Scleropages_formosus
ENSSHAG00000002972	-	100	64.626	ENSTRUG00000021651	snrpc	52	88.158	Takifugu_rubripes
ENSSHAG00000002972	-	69	78.947	ENSTBEG00000015356	-	55	81.818	Tupaia_belangeri
ENSSHAG00000002972	-	56	84.416	ENSTBEG00000013022	-	63	70.408	Tupaia_belangeri
ENSSHAG00000002972	-	93	65.625	ENSUAMG00000014125	SNRPC	52	89.610	Ursus_americanus