EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000003209 (Gene tree)
Gene ID: 100921090
Gene Symbol: DDX39B
Alias: BAT1|D6S81E|UAP56
Full Name: DExD-box helicase 39B
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 8192 bases
Position: chrGL856874.1:55381-63572
Accession: 100921090
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000003651	ResIII	PF04851.15	9.9e-08	1	1
ENSSHAP00000003651	DEAD	PF00270.29	5.1e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000003688	DDX39B-201	1944	-	ENSSHAP00000003651	428 (aa)	XP_003768951	G3VKE6

Gene Model

Click here to download ENSSHAG00000003209's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03013	RNA transport	KEGG
shr03015	mRNA surveillance pathway	KEGG
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000003209's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000003209	DDX39B	84	30.563	ENSSHAG00000002011	DDX25	82	30.788
ENSSHAG00000003209	DDX39B	98	31.308	ENSSHAG00000014781	DDX59	67	31.308
ENSSHAG00000003209	DDX39B	86	33.152	ENSSHAG00000010825	DDX47	69	33.152
ENSSHAG00000003209	DDX39B	87	31.398	ENSSHAG00000010982	DDX49	74	31.398
ENSSHAG00000003209	DDX39B	86	37.534	ENSSHAG00000015756	EIF4A1	90	37.634
ENSSHAG00000003209	DDX39B	85	38.356	ENSSHAG00000005751	-	89	38.108
ENSSHAG00000003209	DDX39B	64	32.491	ENSSHAG00000008169	-	73	32.491
ENSSHAG00000003209	DDX39B	78	38.209	ENSSHAG00000017081	EIF4A2	98	38.209
ENSSHAG00000003209	DDX39B	75	31.269	ENSSHAG00000007733	-	84	31.269
ENSSHAG00000003209	DDX39B	75	30.321	ENSSHAG00000015820	DDX55	60	30.321
ENSSHAG00000003209	DDX39B	100	90.888	ENSSHAG00000005494	DDX39A	100	91.121
ENSSHAG00000003209	DDX39B	85	38.356	ENSSHAG00000004638	-	80	38.356
ENSSHAG00000003209	DDX39B	99	34.033	ENSSHAG00000011424	DDX6	79	35.659

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000003209	DDX39B	100	100.000	ENSG00000198563	DDX39B	100	100.000	Homo_sapiens
ENSSHAG00000003209	DDX39B	100	99.766	ENSAMEG00000009508	DDX39B	99	99.766	Ailuropoda_melanoleuca
ENSSHAG00000003209	DDX39B	99	93.677	ENSACIG00000004534	ddx39b	98	93.677	Amphilophus_citrinellus
ENSSHAG00000003209	DDX39B	100	92.824	ENSATEG00000012366	ddx39b	100	92.824	Anabas_testudineus
ENSSHAG00000003209	DDX39B	100	97.203	ENSACAG00000012240	DDX39B	100	97.203	Anolis_carolinensis
ENSSHAG00000003209	DDX39B	100	100.000	ENSANAG00000030372	DDX39B	100	100.000	Aotus_nancymaae
ENSSHAG00000003209	DDX39B	99	90.783	ENSACLG00000018759	ddx39b	99	90.783	Astatotilapia_calliptera
ENSSHAG00000003209	DDX39B	100	92.431	ENSAMXG00000017837	ddx39b	100	92.431	Astyanax_mexicanus
ENSSHAG00000003209	DDX39B	100	99.766	ENSBTAG00000014490	DDX39B	100	99.766	Bos_taurus
ENSSHAG00000003209	DDX39B	100	100.000	ENSCJAG00000003152	DDX39B	100	100.000	Callithrix_jacchus
ENSSHAG00000003209	DDX39B	100	99.533	ENSCAFG00000000509	DDX39B	100	100.000	Canis_familiaris
ENSSHAG00000003209	DDX39B	100	99.533	ENSCAFG00020020530	DDX39B	100	99.533	Canis_lupus_dingo
ENSSHAG00000003209	DDX39B	100	99.766	ENSCHIG00000004579	DDX39B	100	99.766	Capra_hircus
ENSSHAG00000003209	DDX39B	100	85.280	ENSTSYG00000029741	-	91	88.095	Carlito_syrichta
ENSSHAG00000003209	DDX39B	100	100.000	ENSTSYG00000010226	-	100	100.000	Carlito_syrichta
ENSSHAG00000003209	DDX39B	100	99.766	ENSCAPG00000010066	DDX39B	100	99.766	Cavia_aperea
ENSSHAG00000003209	DDX39B	100	99.766	ENSCPOG00000002335	DDX39B	100	99.766	Cavia_porcellus
ENSSHAG00000003209	DDX39B	100	100.000	ENSCCAG00000027897	DDX39B	100	100.000	Cebus_capucinus
ENSSHAG00000003209	DDX39B	99	90.353	ENSCATG00000043709	DDX39B	99	90.353	Cercocebus_atys
ENSSHAG00000003209	DDX39B	100	99.766	ENSCLAG00000014555	DDX39B	100	99.766	Chinchilla_lanigera
ENSSHAG00000003209	DDX39B	99	99.765	ENSCSAG00000008517	DDX39B	100	99.765	Chlorocebus_sabaeus
ENSSHAG00000003209	DDX39B	64	100.000	ENSCPBG00000014671	-	100	100.000	Chrysemys_picta_bellii
ENSSHAG00000003209	DDX39B	100	100.000	ENSCANG00000041217	DDX39B	100	100.000	Colobus_angolensis_palliatus
ENSSHAG00000003209	DDX39B	83	84.358	ENSCGRG00001021916	-	89	84.358	Cricetulus_griseus_chok1gshd
ENSSHAG00000003209	DDX39B	57	99.184	ENSCGRG00001017315	-	95	99.029	Cricetulus_griseus_chok1gshd
ENSSHAG00000003209	DDX39B	57	99.184	ENSCGRG00000012479	-	76	99.184	Cricetulus_griseus_crigri
ENSSHAG00000003209	DDX39B	100	92.184	ENSDARG00000036069	ddx39b	100	92.414	Danio_rerio
ENSSHAG00000003209	DDX39B	100	100.000	ENSDNOG00000010215	DDX39B	100	100.000	Dasypus_novemcinctus
ENSSHAG00000003209	DDX39B	87	99.733	ENSDORG00000004985	Ddx39b	100	99.733	Dipodomys_ordii
ENSSHAG00000003209	DDX39B	87	86.898	ENSETEG00000009649	DDX39B	87	86.898	Echinops_telfairi
ENSSHAG00000003209	DDX39B	100	100.000	ENSEASG00005017156	DDX39B	100	100.000	Equus_asinus_asinus
ENSSHAG00000003209	DDX39B	100	100.000	ENSECAG00000007750	DDX39B	100	100.000	Equus_caballus
ENSSHAG00000003209	DDX39B	100	92.343	ENSELUG00000017904	ddx39b	100	92.343	Esox_lucius
ENSSHAG00000003209	DDX39B	100	99.766	ENSFCAG00000004497	DDX39B	100	99.766	Felis_catus
ENSSHAG00000003209	DDX39B	100	99.766	ENSFDAG00000011074	DDX39B	100	99.766	Fukomys_damarensis
ENSSHAG00000003209	DDX39B	74	99.684	ENSGAGG00000001300	-	80	99.684	Gopherus_agassizii
ENSSHAG00000003209	DDX39B	100	100.000	ENSGGOG00000005989	DDX39B	100	100.000	Gorilla_gorilla
ENSSHAG00000003209	DDX39B	100	99.299	ENSHGLG00000019248	DDX39B	100	99.299	Heterocephalus_glaber_female
ENSSHAG00000003209	DDX39B	100	99.299	ENSHGLG00100011850	DDX39B	100	99.299	Heterocephalus_glaber_male
ENSSHAG00000003209	DDX39B	100	91.284	ENSIPUG00000015733	DDX39B	94	91.743	Ictalurus_punctatus
ENSSHAG00000003209	DDX39B	100	99.533	ENSSTOG00000012838	DDX39B	100	99.533	Ictidomys_tridecemlineatus
ENSSHAG00000003209	DDX39B	100	99.299	ENSJJAG00000005660	-	100	99.299	Jaculus_jaculus
ENSSHAG00000003209	DDX39B	66	79.078	ENSLBEG00000017177	-	85	75.102	Labrus_bergylta
ENSSHAG00000003209	DDX39B	99	78.251	ENSLBEG00000012254	ddx39b	99	78.220	Labrus_bergylta
ENSSHAG00000003209	DDX39B	100	89.862	ENSLACG00000002110	DDX39B	100	89.862	Latimeria_chalumnae
ENSSHAG00000003209	DDX39B	100	99.766	ENSLAFG00000014202	DDX39B	100	99.766	Loxodonta_africana
ENSSHAG00000003209	DDX39B	100	100.000	ENSMFAG00000034233	DDX39B	100	100.000	Macaca_fascicularis
ENSSHAG00000003209	DDX39B	100	100.000	ENSMMUG00000008839	DDX39B	100	100.000	Macaca_mulatta
ENSSHAG00000003209	DDX39B	100	100.000	ENSMNEG00000041059	DDX39B	100	100.000	Macaca_nemestrina
ENSSHAG00000003209	DDX39B	100	100.000	ENSMLEG00000043791	DDX39B	100	100.000	Mandrillus_leucophaeus
ENSSHAG00000003209	DDX39B	99	90.783	ENSMZEG00005017654	ddx39b	99	90.783	Maylandia_zebra
ENSSHAG00000003209	DDX39B	100	99.299	ENSMAUG00000008059	Ddx39b	100	99.299	Mesocricetus_auratus
ENSSHAG00000003209	DDX39B	100	100.000	ENSMICG00000017349	DDX39B	100	100.000	Microcebus_murinus
ENSSHAG00000003209	DDX39B	100	99.533	ENSMOCG00000011169	Ddx39b	100	99.533	Microtus_ochrogaster
ENSSHAG00000003209	DDX39B	88	99.734	ENSMODG00000015791	DDX39B	88	99.734	Monodelphis_domestica
ENSSHAG00000003209	DDX39B	100	99.533	ENSMUSG00000019432	Ddx39b	100	100.000	Mus_musculus
ENSSHAG00000003209	DDX39B	100	99.533	MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	Mus_pahari
ENSSHAG00000003209	DDX39B	100	99.533	MGP_SPRETEiJ_G0022424	Ddx39b	100	99.533	Mus_spretus
ENSSHAG00000003209	DDX39B	100	99.766	ENSMPUG00000011407	DDX39B	100	99.766	Mustela_putorius_furo
ENSSHAG00000003209	DDX39B	73	100.000	ENSMLUG00000001681	DDX39B	100	100.000	Myotis_lucifugus
ENSSHAG00000003209	DDX39B	100	100.000	ENSNGAG00000022948	Ddx39b	100	100.000	Nannospalax_galili
ENSSHAG00000003209	DDX39B	100	75.467	ENSNLEG00000006094	DDX39B	100	75.467	Nomascus_leucogenys
ENSSHAG00000003209	DDX39B	86	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
ENSSHAG00000003209	DDX39B	100	99.766	ENSOPRG00000011923	DDX39B	100	99.766	Ochotona_princeps
ENSSHAG00000003209	DDX39B	100	99.533	ENSODEG00000018083	DDX39B	100	99.533	Octodon_degus
ENSSHAG00000003209	DDX39B	100	91.898	ENSONIG00000004740	ddx39b	100	91.898	Oreochromis_niloticus
ENSSHAG00000003209	DDX39B	55	99.156	ENSOANG00000008361	DDX39B	95	99.156	Ornithorhynchus_anatinus
ENSSHAG00000003209	DDX39B	100	96.163	ENSOCUG00000024126	DDX39B	100	96.163	Oryctolagus_cuniculus
ENSSHAG00000003209	DDX39B	100	98.601	ENSOGAG00000028850	-	100	98.601	Otolemur_garnettii
ENSSHAG00000003209	DDX39B	84	91.711	ENSOGAG00000009067	-	100	98.457	Otolemur_garnettii
ENSSHAG00000003209	DDX39B	100	99.766	ENSOARG00000008787	DDX39B	98	99.766	Ovis_aries
ENSSHAG00000003209	DDX39B	100	100.000	ENSPPAG00000043072	DDX39B	100	100.000	Pan_paniscus
ENSSHAG00000003209	DDX39B	100	99.766	ENSPPRG00000001913	DDX39B	100	99.766	Panthera_pardus
ENSSHAG00000003209	DDX39B	100	98.832	ENSPTIG00000017669	DDX39B	100	98.832	Panthera_tigris_altaica
ENSSHAG00000003209	DDX39B	100	100.000	ENSPTRG00000032509	DDX39B	100	100.000	Pan_troglodytes
ENSSHAG00000003209	DDX39B	100	100.000	ENSPANG00000018609	DDX39B	100	100.000	Papio_anubis
ENSSHAG00000003209	DDX39B	100	90.847	ENSPKIG00000011324	ddx39b	100	91.304	Paramormyrops_kingsleyae
ENSSHAG00000003209	DDX39B	100	99.299	ENSPEMG00000016905	Ddx39b	100	99.299	Peromyscus_maniculatus_bairdii
ENSSHAG00000003209	DDX39B	100	100.000	ENSPCIG00000017572	DDX39B	100	100.000	Phascolarctos_cinereus
ENSSHAG00000003209	DDX39B	100	100.000	ENSPPYG00000016433	DDX39B	100	100.000	Pongo_abelii
ENSSHAG00000003209	DDX39B	66	99.648	ENSPCAG00000003484	DDX39B	100	99.648	Procavia_capensis
ENSSHAG00000003209	DDX39B	100	100.000	ENSPCOG00000018656	DDX39B	100	100.000	Propithecus_coquereli
ENSSHAG00000003209	DDX39B	100	99.533	ENSPVAG00000004653	DDX39B	100	99.533	Pteropus_vampyrus
ENSSHAG00000003209	DDX39B	99	82.904	ENSPNYG00000010382	ddx39b	98	82.904	Pundamilia_nyererei
ENSSHAG00000003209	DDX39B	100	92.202	ENSPNAG00000026926	ddx39b	100	92.202	Pygocentrus_nattereri
ENSSHAG00000003209	DDX39B	100	99.533	ENSRNOG00000000841	Ddx39b	100	99.533	Rattus_norvegicus
ENSSHAG00000003209	DDX39B	100	89.720	ENSRBIG00000031309	DDX39B	100	89.720	Rhinopithecus_bieti
ENSSHAG00000003209	DDX39B	100	100.000	ENSRROG00000039517	DDX39B	100	100.000	Rhinopithecus_roxellana
ENSSHAG00000003209	DDX39B	100	89.720	ENSSBOG00000035513	-	100	89.720	Saimiri_boliviensis_boliviensis
ENSSHAG00000003209	DDX39B	100	91.076	ENSSFOG00015016107	ddx39b	100	91.762	Scleropages_formosus
ENSSHAG00000003209	DDX39B	100	93.287	ENSSDUG00000011557	ddx39b	100	93.519	Seriola_dumerili
ENSSHAG00000003209	DDX39B	100	93.056	ENSSLDG00000015763	ddx39b	100	93.287	Seriola_lalandi_dorsalis
ENSSHAG00000003209	DDX39B	87	87.701	ENSSARG00000005245	DDX39B	100	87.701	Sorex_araneus
ENSSHAG00000003209	DDX39B	100	97.897	ENSSPUG00000012805	DDX39B	100	97.897	Sphenodon_punctatus
ENSSHAG00000003209	DDX39B	100	100.000	ENSSSCG00000001400	DDX39B	100	100.000	Sus_scrofa
ENSSHAG00000003209	DDX39B	100	76.869	ENSTBEG00000003721	DDX39B	100	76.869	Tupaia_belangeri
ENSSHAG00000003209	DDX39B	100	91.455	ENSTTRG00000014074	DDX39B	100	91.455	Tursiops_truncatus
ENSSHAG00000003209	DDX39B	100	86.977	ENSUAMG00000027335	DDX39B	100	86.977	Ursus_americanus
ENSSHAG00000003209	DDX39B	100	90.888	ENSUMAG00000015124	DDX39B	100	90.888	Ursus_maritimus
ENSSHAG00000003209	DDX39B	61	100.000	ENSVPAG00000009167	-	74	100.000	Vicugna_pacos
ENSSHAG00000003209	DDX39B	100	99.533	ENSVVUG00000019518	DDX39B	99	99.533	Vulpes_vulpes
ENSSHAG00000003209	DDX39B	100	83.953	ENSXETG00000002498	ddx39b	99	83.953	Xenopus_tropicalis