EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000003262 (Gene tree)
Gene ID: 100931940
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 26903 bases
Position: chrGL861615.1:57603-84505
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000003709	CSD	PF00313.22	8e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000003746	YBX3-201	894	-	ENSSHAP00000003709	297 (aa)	-	G3VKK4

Gene Model

Click here to download ENSSHAG00000003262's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000003262's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000003262	YBX3	98	80.756	ENSG00000060138	YBX3	89	97.561	Homo_sapiens
ENSSHAG00000003262	YBX3	98	81.443	ENSAMEG00000009393	YBX3	81	81.100	Ailuropoda_melanoleuca
ENSSHAG00000003262	YBX3	60	89.796	ENSANAG00000033366	-	66	86.538	Aotus_nancymaae
ENSSHAG00000003262	YBX3	98	80.069	ENSANAG00000024492	-	90	80.069	Aotus_nancymaae
ENSSHAG00000003262	YBX3	98	79.381	ENSBTAG00000009663	YBX3	75	75.945	Bos_taurus
ENSSHAG00000003262	YBX3	98	80.069	ENSCJAG00000021660	-	65	98.837	Callithrix_jacchus
ENSSHAG00000003262	YBX3	66	85.714	ENSCJAG00000033824	-	72	80.488	Callithrix_jacchus
ENSSHAG00000003262	YBX3	98	82.474	ENSCAFG00000013401	YBX3	90	98.837	Canis_familiaris
ENSSHAG00000003262	YBX3	98	79.381	ENSCAFG00020006412	YBX3	67	88.660	Canis_lupus_dingo
ENSSHAG00000003262	YBX3	98	79.725	ENSCHIG00000010863	YBX3	79	79.381	Capra_hircus
ENSSHAG00000003262	YBX3	98	80.412	ENSTSYG00000004204	-	77	98.837	Carlito_syrichta
ENSSHAG00000003262	YBX3	98	49.655	ENSTSYG00000035821	-	69	95.349	Carlito_syrichta
ENSSHAG00000003262	YBX3	98	77.320	ENSCAPG00000015039	YBX3	93	78.007	Cavia_aperea
ENSSHAG00000003262	YBX3	98	77.320	ENSCPOG00000011329	YBX3	73	98.837	Cavia_porcellus
ENSSHAG00000003262	YBX3	98	79.381	ENSCCAG00000016469	YBX3	65	98.837	Cebus_capucinus
ENSSHAG00000003262	YBX3	98	80.756	ENSCATG00000034411	YBX3	65	98.837	Cercocebus_atys
ENSSHAG00000003262	YBX3	98	78.007	ENSCLAG00000016030	YBX3	93	78.694	Chinchilla_lanigera
ENSSHAG00000003262	YBX3	98	80.412	ENSCSAG00000008744	YBX3	76	80.412	Chlorocebus_sabaeus
ENSSHAG00000003262	YBX3	98	76.712	ENSCPBG00000014147	YBX3	69	95.402	Chrysemys_picta_bellii
ENSSHAG00000003262	YBX3	98	79.725	ENSCANG00000036801	YBX3	80	98.837	Colobus_angolensis_palliatus
ENSSHAG00000003262	YBX3	98	82.818	ENSCGRG00001016148	Ybx3	66	98.837	Cricetulus_griseus_chok1gshd
ENSSHAG00000003262	YBX3	98	81.419	ENSCGRG00000004563	Ybx3	97	80.068	Cricetulus_griseus_crigri
ENSSHAG00000003262	YBX3	98	79.725	ENSDORG00000009103	Ybx3	80	79.381	Dipodomys_ordii
ENSSHAG00000003262	YBX3	97	73.196	ENSETEG00000002557	YBX3	99	72.759	Echinops_telfairi
ENSSHAG00000003262	YBX3	98	77.586	ENSEASG00005014726	YBX3	67	87.912	Equus_asinus_asinus
ENSSHAG00000003262	YBX3	98	79.725	ENSECAG00000013777	YBX3	68	88.660	Equus_caballus
ENSSHAG00000003262	YBX3	97	80.690	ENSEEUG00000010415	YBX3	100	80.690	Erinaceus_europaeus
ENSSHAG00000003262	YBX3	98	81.787	ENSFCAG00000027748	YBX3	65	98.837	Felis_catus
ENSSHAG00000003262	YBX3	98	61.433	ENSFALG00000003661	YBX3	100	61.433	Ficedula_albicollis
ENSSHAG00000003262	YBX3	99	75.254	ENSFDAG00000021192	YBX3	91	73.898	Fukomys_damarensis
ENSSHAG00000003262	YBX3	71	98.077	ENSGALG00000031890	YBX3	66	98.837	Gallus_gallus
ENSSHAG00000003262	YBX3	98	75.342	ENSGAGG00000017780	YBX3	68	98.837	Gopherus_agassizii
ENSSHAG00000003262	YBX3	98	80.756	ENSGGOG00000001352	YBX3	65	98.837	Gorilla_gorilla
ENSSHAG00000003262	YBX3	91	74.908	ENSHGLG00000015495	-	77	70.803	Heterocephalus_glaber_female
ENSSHAG00000003262	YBX3	98	69.416	ENSHGLG00000014798	-	84	67.931	Heterocephalus_glaber_female
ENSSHAG00000003262	YBX3	66	98.837	ENSHGLG00100003589	YBX3	79	98.837	Heterocephalus_glaber_male
ENSSHAG00000003262	YBX3	98	76.976	ENSSTOG00000002108	-	88	76.976	Ictidomys_tridecemlineatus
ENSSHAG00000003262	YBX3	98	76.289	ENSSTOG00000032577	-	80	75.172	Ictidomys_tridecemlineatus
ENSSHAG00000003262	YBX3	98	61.168	ENSJJAG00000014239	Ybx3	90	83.333	Jaculus_jaculus
ENSSHAG00000003262	YBX3	98	82.474	ENSLAFG00000017247	YBX3	83	77.083	Loxodonta_africana
ENSSHAG00000003262	YBX3	98	80.069	ENSMFAG00000039369	YBX3	65	98.837	Macaca_fascicularis
ENSSHAG00000003262	YBX3	98	80.069	ENSMMUG00000022469	YBX3	88	80.069	Macaca_mulatta
ENSSHAG00000003262	YBX3	98	80.412	ENSMNEG00000045109	YBX3	65	98.837	Macaca_nemestrina
ENSSHAG00000003262	YBX3	98	81.787	ENSMLEG00000033618	YBX3	69	98.837	Mandrillus_leucophaeus
ENSSHAG00000003262	YBX3	71	98.077	ENSMGAG00000014224	YBX3	91	98.837	Meleagris_gallopavo
ENSSHAG00000003262	YBX3	98	82.474	ENSMAUG00000012185	Ybx3	78	98.837	Mesocricetus_auratus
ENSSHAG00000003262	YBX3	77	81.429	ENSMICG00000031459	-	71	81.429	Microcebus_murinus
ENSSHAG00000003262	YBX3	98	82.474	ENSMICG00000038002	-	77	81.443	Microcebus_murinus
ENSSHAG00000003262	YBX3	98	82.818	ENSMOCG00000016291	Ybx3	83	98.837	Microtus_ochrogaster
ENSSHAG00000003262	YBX3	98	86.689	ENSMODG00000018248	YBX3	91	87.713	Monodelphis_domestica
ENSSHAG00000003262	YBX3	98	83.505	MGP_CAROLIEiJ_G0028947	Ybx3	66	98.837	Mus_caroli
ENSSHAG00000003262	YBX3	98	84.192	ENSMUSG00000030189	Ybx3	66	98.837	Mus_musculus
ENSSHAG00000003262	YBX3	98	83.505	MGP_PahariEiJ_G0022709	Ybx3	66	98.837	Mus_pahari
ENSSHAG00000003262	YBX3	98	83.849	MGP_SPRETEiJ_G0029994	Ybx3	66	98.837	Mus_spretus
ENSSHAG00000003262	YBX3	98	66.221	ENSMPUG00000011810	YBX3	77	66.667	Mustela_putorius_furo
ENSSHAG00000003262	YBX3	91	80.000	ENSMLUG00000007476	YBX3	100	79.273	Myotis_lucifugus
ENSSHAG00000003262	YBX3	97	77.663	ENSNGAG00000000710	Ybx3	85	87.629	Nannospalax_galili
ENSSHAG00000003262	YBX3	98	76.976	ENSNLEG00000034844	YBX3	81	76.976	Nomascus_leucogenys
ENSSHAG00000003262	YBX3	61	79.670	ENSMEUG00000002507	-	83	79.670	Notamacropus_eugenii
ENSSHAG00000003262	YBX3	91	75.000	ENSODEG00000017957	YBX3	84	74.570	Octodon_degus
ENSSHAG00000003262	YBX3	93	79.496	ENSOCUG00000001889	YBX3	81	77.083	Oryctolagus_cuniculus
ENSSHAG00000003262	YBX3	98	79.195	ENSOGAG00000013245	YBX3	77	78.859	Otolemur_garnettii
ENSSHAG00000003262	YBX3	98	69.655	ENSOARG00000020919	YBX3	96	67.458	Ovis_aries
ENSSHAG00000003262	YBX3	98	80.756	ENSPPAG00000039068	YBX3	68	98.837	Pan_paniscus
ENSSHAG00000003262	YBX3	98	81.443	ENSPPRG00000005859	YBX3	65	98.837	Panthera_pardus
ENSSHAG00000003262	YBX3	98	83.162	ENSPTIG00000005322	YBX3	80	82.131	Panthera_tigris_altaica
ENSSHAG00000003262	YBX3	98	80.756	ENSPTRG00000004681	YBX3	65	98.837	Pan_troglodytes
ENSSHAG00000003262	YBX3	98	80.756	ENSPANG00000010280	YBX3	65	98.837	Papio_anubis
ENSSHAG00000003262	YBX3	65	98.837	ENSPSIG00000009247	YBX3	90	98.837	Pelodiscus_sinensis
ENSSHAG00000003262	YBX3	66	98.837	ENSPEMG00000010391	-	74	98.837	Peromyscus_maniculatus_bairdii
ENSSHAG00000003262	YBX3	98	82.474	ENSPEMG00000012132	-	79	98.837	Peromyscus_maniculatus_bairdii
ENSSHAG00000003262	YBX3	89	89.811	ENSPCIG00000029949	YBX3	100	88.679	Phascolarctos_cinereus
ENSSHAG00000003262	YBX3	98	80.412	ENSPPYG00000004279	YBX3	77	80.412	Pongo_abelii
ENSSHAG00000003262	YBX3	71	83.412	ENSPCAG00000001397	YBX3	69	83.495	Procavia_capensis
ENSSHAG00000003262	YBX3	60	80.447	ENSPCOG00000011663	YBX3	67	80.447	Propithecus_coquereli
ENSSHAG00000003262	YBX3	98	68.041	ENSPVAG00000006740	YBX3	53	84.951	Pteropus_vampyrus
ENSSHAG00000003262	YBX3	98	83.849	ENSRNOG00000005480	Ybx3	67	98.837	Rattus_norvegicus
ENSSHAG00000003262	YBX3	98	79.725	ENSRBIG00000039208	YBX3	65	98.837	Rhinopithecus_bieti
ENSSHAG00000003262	YBX3	98	79.725	ENSRROG00000029638	YBX3	65	98.837	Rhinopithecus_roxellana
ENSSHAG00000003262	YBX3	98	80.756	ENSSBOG00000030573	YBX3	66	98.837	Saimiri_boliviensis_boliviensis
ENSSHAG00000003262	YBX3	98	81.100	ENSSSCG00000000633	YBX3	63	98.837	Sus_scrofa
ENSSHAG00000003262	YBX3	98	63.140	ENSTGUG00000012047	YBX3	100	63.140	Taeniopygia_guttata
ENSSHAG00000003262	YBX3	97	81.724	ENSTBEG00000012570	YBX3	78	81.724	Tupaia_belangeri
ENSSHAG00000003262	YBX3	90	75.373	ENSTTRG00000008045	YBX3	100	75.000	Tursiops_truncatus
ENSSHAG00000003262	YBX3	95	78.169	ENSUAMG00000016662	YBX3	100	77.113	Ursus_americanus
ENSSHAG00000003262	YBX3	98	81.787	ENSUMAG00000016118	YBX3	94	80.756	Ursus_maritimus
ENSSHAG00000003262	YBX3	97	61.379	ENSVPAG00000000876	YBX3	100	61.379	Vicugna_pacos
ENSSHAG00000003262	YBX3	95	78.873	ENSVVUG00000004956	YBX3	100	77.817	Vulpes_vulpes