EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000003487 (Gene tree)
Gene ID: 100924655
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 6035 bases
Position: chrGL850009.1:64684-70718
Accession: 25652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000003960	MMR_HSR1	PF01926.23	5.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000004000	LSG1-201	1551	-	ENSSHAP00000003960	516 (aa)	-	G3VLA5

Gene Model

Click here to download ENSSHAG00000003487's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000003487's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000003487	LSG1	99	66.163	ENSG00000041802	LSG1	87	70.000	Homo_sapiens
ENSSHAG00000003487	LSG1	100	61.787	ENSAPOG00000009694	lsg1	77	61.101	Acanthochromis_polyacanthus
ENSSHAG00000003487	LSG1	100	63.227	ENSAMEG00000009343	LSG1	78	64.583	Ailuropoda_melanoleuca
ENSSHAG00000003487	LSG1	100	61.877	ENSACIG00000012406	lsg1	77	61.877	Amphilophus_citrinellus
ENSSHAG00000003487	LSG1	100	60.413	ENSAOCG00000016066	lsg1	77	61.450	Amphiprion_ocellaris
ENSSHAG00000003487	LSG1	87	75.229	ENSAPEG00000003252	lsg1	77	62.595	Amphiprion_percula
ENSSHAG00000003487	LSG1	100	62.572	ENSATEG00000011794	lsg1	77	62.572	Anabas_testudineus
ENSSHAG00000003487	LSG1	100	60.595	ENSACAG00000004222	LSG1	82	60.935	Anolis_carolinensis
ENSSHAG00000003487	LSG1	99	65.849	ENSANAG00000021153	LSG1	78	66.730	Aotus_nancymaae
ENSSHAG00000003487	LSG1	100	60.902	ENSACLG00000000520	lsg1	78	60.338	Astatotilapia_calliptera
ENSSHAG00000003487	LSG1	100	61.111	ENSAMXG00000008271	lsg1	78	62.141	Astyanax_mexicanus
ENSSHAG00000003487	LSG1	99	67.562	ENSBTAG00000008461	LSG1	78	67.241	Bos_taurus
ENSSHAG00000003487	LSG1	64	58.772	WBGene00016907	C53H9.2	70	58.772	Caenorhabditis_elegans
ENSSHAG00000003487	LSG1	99	66.163	ENSCJAG00000013962	LSG1	78	66.920	Callithrix_jacchus
ENSSHAG00000003487	LSG1	100	64.137	ENSCAFG00000013445	LSG1	82	64.516	Canis_familiaris
ENSSHAG00000003487	LSG1	100	64.639	ENSCAFG00020002216	LSG1	83	65.655	Canis_lupus_dingo
ENSSHAG00000003487	LSG1	100	66.160	ENSCHIG00000015769	LSG1	78	66.479	Capra_hircus
ENSSHAG00000003487	LSG1	99	65.602	ENSTSYG00000001447	LSG1	78	66.541	Carlito_syrichta
ENSSHAG00000003487	LSG1	99	64.381	ENSCAPG00000009856	LSG1	81	64.952	Cavia_aperea
ENSSHAG00000003487	LSG1	99	64.906	ENSCCAG00000035744	LSG1	78	65.655	Cebus_capucinus
ENSSHAG00000003487	LSG1	99	66.163	ENSCATG00000042060	LSG1	79	67.429	Cercocebus_atys
ENSSHAG00000003487	LSG1	99	66.603	ENSCSAG00000008796	LSG1	72	67.424	Chlorocebus_sabaeus
ENSSHAG00000003487	LSG1	100	66.226	ENSCPBG00000015941	LSG1	65	66.604	Chrysemys_picta_bellii
ENSSHAG00000003487	LSG1	59	62.500	ENSCING00000007079	-	64	62.500	Ciona_intestinalis
ENSSHAG00000003487	LSG1	60	65.385	ENSCSAVG00000002514	-	63	65.385	Ciona_savignyi
ENSSHAG00000003487	LSG1	99	65.974	ENSCANG00000030709	LSG1	79	66.920	Colobus_angolensis_palliatus
ENSSHAG00000003487	LSG1	99	66.922	ENSCGRG00001019846	Lsg1	78	67.366	Cricetulus_griseus_chok1gshd
ENSSHAG00000003487	LSG1	99	66.922	ENSCGRG00000014617	Lsg1	78	67.366	Cricetulus_griseus_crigri
ENSSHAG00000003487	LSG1	100	62.524	ENSCSEG00000008522	lsg1	77	61.394	Cynoglossus_semilaevis
ENSSHAG00000003487	LSG1	100	62.004	ENSCVAG00000002484	lsg1	77	62.193	Cyprinodon_variegatus
ENSSHAG00000003487	LSG1	100	62.476	ENSDARG00000015352	lsg1	77	63.027	Danio_rerio
ENSSHAG00000003487	LSG1	99	65.725	ENSDNOG00000006224	LSG1	78	64.981	Dasypus_novemcinctus
ENSSHAG00000003487	LSG1	76	68.750	FBgn0266284	Ns3	65	68.750	Drosophila_melanogaster
ENSSHAG00000003487	LSG1	98	59.810	ENSETEG00000003888	LSG1	78	60.487	Echinops_telfairi
ENSSHAG00000003487	LSG1	99	57.570	ENSEBUG00000003119	lsg1	74	56.250	Eptatretus_burgeri
ENSSHAG00000003487	LSG1	99	65.299	ENSEASG00005000678	LSG1	78	66.292	Equus_asinus_asinus
ENSSHAG00000003487	LSG1	99	65.234	ENSECAG00000017659	LSG1	78	66.479	Equus_caballus
ENSSHAG00000003487	LSG1	83	62.538	ENSEEUG00000015217	LSG1	65	63.385	Erinaceus_europaeus
ENSSHAG00000003487	LSG1	99	59.811	ENSELUG00000023973	lsg1	77	60.377	Esox_lucius
ENSSHAG00000003487	LSG1	100	63.722	ENSFCAG00000024957	LSG1	78	64.981	Felis_catus
ENSSHAG00000003487	LSG1	99	63.602	ENSFALG00000007210	LSG1	79	64.850	Ficedula_albicollis
ENSSHAG00000003487	LSG1	99	64.368	ENSFDAG00000017373	LSG1	77	64.368	Fukomys_damarensis
ENSSHAG00000003487	LSG1	99	60.769	ENSFHEG00000003680	lsg1	77	61.996	Fundulus_heteroclitus
ENSSHAG00000003487	LSG1	81	70.833	ENSGMOG00000015834	lsg1	69	68.421	Gadus_morhua
ENSSHAG00000003487	LSG1	99	62.804	ENSGALG00000007058	LSG1	69	63.401	Gallus_gallus
ENSSHAG00000003487	LSG1	100	60.531	ENSGAFG00000015831	lsg1	77	60.920	Gambusia_affinis
ENSSHAG00000003487	LSG1	100	61.017	ENSGACG00000009323	lsg1	77	60.377	Gasterosteus_aculeatus
ENSSHAG00000003487	LSG1	99	66.034	ENSGGOG00000000520	LSG1	79	66.476	Gorilla_gorilla
ENSSHAG00000003487	LSG1	100	62.023	ENSHBUG00000005659	lsg1	78	61.450	Haplochromis_burtoni
ENSSHAG00000003487	LSG1	99	62.476	ENSHGLG00000017390	LSG1	77	62.830	Heterocephalus_glaber_female
ENSSHAG00000003487	LSG1	99	62.476	ENSHGLG00100018587	LSG1	77	62.830	Heterocephalus_glaber_male
ENSSHAG00000003487	LSG1	100	60.674	ENSHCOG00000016848	lsg1	77	59.888	Hippocampus_comes
ENSSHAG00000003487	LSG1	100	63.532	ENSIPUG00000008631	lsg1	77	63.532	Ictalurus_punctatus
ENSSHAG00000003487	LSG1	97	62.427	ENSSTOG00000010234	LSG1	92	63.477	Ictidomys_tridecemlineatus
ENSSHAG00000003487	LSG1	99	66.476	ENSJJAG00000015513	Lsg1	78	66.286	Jaculus_jaculus
ENSSHAG00000003487	LSG1	100	60.728	ENSKMAG00000009681	lsg1	77	60.728	Kryptolebias_marmoratus
ENSSHAG00000003487	LSG1	99	60.845	ENSLBEG00000024261	lsg1	76	60.845	Labrus_bergylta
ENSSHAG00000003487	LSG1	100	63.910	ENSLACG00000013399	LSG1	79	64.165	Latimeria_chalumnae
ENSSHAG00000003487	LSG1	100	62.069	ENSLOCG00000004918	lsg1	78	63.027	Lepisosteus_oculatus
ENSSHAG00000003487	LSG1	99	65.517	ENSLAFG00000012919	-	78	66.221	Loxodonta_africana
ENSSHAG00000003487	LSG1	99	66.163	ENSMFAG00000039903	LSG1	79	67.429	Macaca_fascicularis
ENSSHAG00000003487	LSG1	99	66.098	ENSMMUG00000010708	LSG1	78	67.429	Macaca_mulatta
ENSSHAG00000003487	LSG1	99	66.163	ENSMNEG00000031538	LSG1	79	67.429	Macaca_nemestrina
ENSSHAG00000003487	LSG1	99	66.098	ENSMLEG00000041184	LSG1	79	67.429	Mandrillus_leucophaeus
ENSSHAG00000003487	LSG1	100	61.333	ENSMAMG00000000470	lsg1	77	61.333	Mastacembelus_armatus
ENSSHAG00000003487	LSG1	100	62.023	ENSMZEG00005017865	lsg1	78	61.450	Maylandia_zebra
ENSSHAG00000003487	LSG1	99	62.734	ENSMGAG00000007050	LSG1	88	63.148	Meleagris_gallopavo
ENSSHAG00000003487	LSG1	96	63.200	ENSMAUG00000016976	Lsg1	74	63.872	Mesocricetus_auratus
ENSSHAG00000003487	LSG1	99	66.667	ENSMICG00000049087	LSG1	78	66.667	Microcebus_murinus
ENSSHAG00000003487	LSG1	99	66.920	ENSMOCG00000022136	Lsg1	77	66.286	Microtus_ochrogaster
ENSSHAG00000003487	LSG1	80	76.147	ENSMMOG00000008884	lsg1	75	68.111	Mola_mola
ENSSHAG00000003487	LSG1	100	66.157	ENSMODG00000019828	LSG1	78	66.095	Monodelphis_domestica
ENSSHAG00000003487	LSG1	100	67.429	MGP_CAROLIEiJ_G0020648	Lsg1	78	67.429	Mus_caroli
ENSSHAG00000003487	LSG1	100	67.048	ENSMUSG00000022538	Lsg1	78	67.429	Mus_musculus
ENSSHAG00000003487	LSG1	100	67.108	MGP_PahariEiJ_G0016352	Lsg1	78	67.366	Mus_pahari
ENSSHAG00000003487	LSG1	100	67.495	MGP_SPRETEiJ_G0021544	Lsg1	78	67.495	Mus_spretus
ENSSHAG00000003487	LSG1	100	63.585	ENSMPUG00000003734	LSG1	78	64.783	Mustela_putorius_furo
ENSSHAG00000003487	LSG1	100	66.539	ENSMLUG00000012548	LSG1	78	67.366	Myotis_lucifugus
ENSSHAG00000003487	LSG1	99	64.449	ENSNGAG00000021872	Lsg1	77	64.639	Nannospalax_galili
ENSSHAG00000003487	LSG1	99	66.793	ENSNLEG00000008293	LSG1	79	67.429	Nomascus_leucogenys
ENSSHAG00000003487	LSG1	74	100.000	ENSMEUG00000009041	-	72	100.000	Notamacropus_eugenii
ENSSHAG00000003487	LSG1	100	62.214	ENSONIG00000002635	lsg1	78	62.004	Oreochromis_niloticus
ENSSHAG00000003487	LSG1	100	68.251	ENSOANG00000012742	LSG1	81	68.251	Ornithorhynchus_anatinus
ENSSHAG00000003487	LSG1	99	66.163	ENSOCUG00000004817	LSG1	78	67.547	Oryctolagus_cuniculus
ENSSHAG00000003487	LSG1	100	60.115	ENSORLG00000007695	lsg1	76	60.115	Oryzias_latipes
ENSSHAG00000003487	LSG1	100	60.687	ENSORLG00020016286	lsg1	77	60.496	Oryzias_latipes_hni
ENSSHAG00000003487	LSG1	100	60.115	ENSORLG00015012025	lsg1	76	59.542	Oryzias_latipes_hsok
ENSSHAG00000003487	LSG1	100	60.192	ENSOMEG00000022379	lsg1	76	60.192	Oryzias_melastigma
ENSSHAG00000003487	LSG1	99	65.849	ENSOGAG00000003475	LSG1	78	66.415	Otolemur_garnettii
ENSSHAG00000003487	LSG1	100	66.160	ENSOARG00000020403	LSG1	78	66.604	Ovis_aries
ENSSHAG00000003487	LSG1	99	66.985	ENSPPAG00000029271	LSG1	79	66.730	Pan_paniscus
ENSSHAG00000003487	LSG1	100	63.415	ENSPPRG00000010281	LSG1	78	64.860	Panthera_pardus
ENSSHAG00000003487	LSG1	100	63.894	ENSPTIG00000010789	LSG1	78	65.348	Panthera_tigris_altaica
ENSSHAG00000003487	LSG1	99	66.981	ENSPTRG00000015760	LSG1	79	66.286	Pan_troglodytes
ENSSHAG00000003487	LSG1	99	66.163	ENSPANG00000018249	LSG1	79	67.429	Papio_anubis
ENSSHAG00000003487	LSG1	99	59.847	ENSPKIG00000002895	lsg1	78	60.345	Paramormyrops_kingsleyae
ENSSHAG00000003487	LSG1	100	64.504	ENSPSIG00000009821	LSG1	80	64.885	Pelodiscus_sinensis
ENSSHAG00000003487	LSG1	99	62.214	ENSPMGG00000000931	lsg1	82	61.832	Periophthalmus_magnuspinnatus
ENSSHAG00000003487	LSG1	99	66.226	ENSPEMG00000012082	-	78	65.970	Peromyscus_maniculatus_bairdii
ENSSHAG00000003487	LSG1	99	58.912	ENSPMAG00000007451	lsg1	78	58.724	Petromyzon_marinus
ENSSHAG00000003487	LSG1	100	83.598	ENSPCIG00000013890	LSG1	64	83.598	Phascolarctos_cinereus
ENSSHAG00000003487	LSG1	100	61.877	ENSPFOG00000021882	lsg1	77	61.977	Poecilia_formosa
ENSSHAG00000003487	LSG1	100	61.111	ENSPLAG00000019536	lsg1	77	61.217	Poecilia_latipinna
ENSSHAG00000003487	LSG1	99	61.568	ENSPMEG00000017281	lsg1	78	61.670	Poecilia_mexicana
ENSSHAG00000003487	LSG1	100	49.623	ENSPREG00000006048	lsg1	77	50.000	Poecilia_reticulata
ENSSHAG00000003487	LSG1	90	67.941	ENSPPYG00000014425	LSG1	75	67.672	Pongo_abelii
ENSSHAG00000003487	LSG1	99	55.153	ENSPCAG00000005511	LSG1	78	54.789	Procavia_capensis
ENSSHAG00000003487	LSG1	99	65.478	ENSPCOG00000012360	LSG1	78	66.730	Propithecus_coquereli
ENSSHAG00000003487	LSG1	100	60.902	ENSPNYG00000021994	lsg1	78	60.338	Pundamilia_nyererei
ENSSHAG00000003487	LSG1	100	63.410	ENSPNAG00000015533	lsg1	78	63.218	Pygocentrus_nattereri
ENSSHAG00000003487	LSG1	100	65.076	ENSRNOG00000001727	Lsg1	78	66.856	Rattus_norvegicus
ENSSHAG00000003487	LSG1	99	65.784	ENSRBIG00000029053	LSG1	78	66.604	Rhinopithecus_bieti
ENSSHAG00000003487	LSG1	99	65.784	ENSRROG00000037702	LSG1	78	66.604	Rhinopithecus_roxellana
ENSSHAG00000003487	LSG1	57	56.647	YGL099W	LSG1	52	55.645	Saccharomyces_cerevisiae
ENSSHAG00000003487	LSG1	99	66.165	ENSSBOG00000034938	LSG1	78	66.919	Saimiri_boliviensis_boliviensis
ENSSHAG00000003487	LSG1	100	62.335	ENSSFOG00015008955	lsg1	77	62.977	Scleropages_formosus
ENSSHAG00000003487	LSG1	100	61.932	ENSSDUG00000004622	lsg1	78	61.932	Seriola_dumerili
ENSSHAG00000003487	LSG1	100	62.188	ENSSLDG00000010869	lsg1	77	61.686	Seriola_lalandi_dorsalis
ENSSHAG00000003487	LSG1	75	94.000	ENSSARG00000012981	LSG1	62	94.000	Sorex_araneus
ENSSHAG00000003487	LSG1	100	65.169	ENSSPUG00000016347	LSG1	78	65.169	Sphenodon_punctatus
ENSSHAG00000003487	LSG1	100	61.568	ENSSPAG00000005508	lsg1	80	61.714	Stegastes_partitus
ENSSHAG00000003487	LSG1	100	66.157	ENSSSCG00000011827	LSG1	78	66.157	Sus_scrofa
ENSSHAG00000003487	LSG1	99	62.177	ENSTGUG00000009068	LSG1	88	63.925	Taeniopygia_guttata
ENSSHAG00000003487	LSG1	100	56.952	ENSTRUG00000017380	lsg1	76	56.762	Takifugu_rubripes
ENSSHAG00000003487	LSG1	100	63.098	ENSTNIG00000015570	lsg1	77	62.808	Tetraodon_nigroviridis
ENSSHAG00000003487	LSG1	89	68.932	ENSTTRG00000000559	LSG1	69	68.932	Tursiops_truncatus
ENSSHAG00000003487	LSG1	100	63.757	ENSUAMG00000012454	LSG1	78	64.474	Ursus_americanus
ENSSHAG00000003487	LSG1	100	63.757	ENSUMAG00000000855	LSG1	78	64.474	Ursus_maritimus
ENSSHAG00000003487	LSG1	94	64.414	ENSVPAG00000012400	LSG1	78	64.919	Vicugna_pacos
ENSSHAG00000003487	LSG1	100	63.878	ENSVVUG00000008956	LSG1	80	64.896	Vulpes_vulpes
ENSSHAG00000003487	LSG1	100	61.860	ENSXETG00000003451	lsg1	78	62.808	Xenopus_tropicalis
ENSSHAG00000003487	LSG1	100	60.962	ENSXCOG00000003239	lsg1	77	61.154	Xiphophorus_couchianus
ENSSHAG00000003487	LSG1	100	59.888	ENSXMAG00000005536	lsg1	78	60.148	Xiphophorus_maculatus