EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000003666 (Gene tree)
Gene ID: 100934157
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 10542 bases
Position: chrGL841636.1:70449-80990
Accession: 10765
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000004160	PRP21_like_P	PF12230.8	5.4e-51	1	1
ENSSHAP00000004160	Surp	PF01805.20	5.2e-46	1	2
ENSSHAP00000004160	Surp	PF01805.20	5.2e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000004201	SF3A1-201	2370	-	ENSSHAP00000004160	789 (aa)	-	G3VLV5

Gene Model

Click here to download ENSSHAG00000003666's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000003666's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000003666	SF3A1	98	94.955	ENSG00000099995	SF3A1	98	94.110	Homo_sapiens
ENSSHAG00000003666	SF3A1	97	82.484	ENSAPOG00000020465	sf3a1	100	80.076	Acanthochromis_polyacanthus
ENSSHAG00000003666	SF3A1	98	95.213	ENSAMEG00000007737	SF3A1	97	95.213	Ailuropoda_melanoleuca
ENSSHAG00000003666	SF3A1	99	82.107	ENSACIG00000020672	sf3a1	100	81.091	Amphilophus_citrinellus
ENSSHAG00000003666	SF3A1	99	80.838	ENSAOCG00000003060	sf3a1	100	80.203	Amphiprion_ocellaris
ENSSHAG00000003666	SF3A1	99	80.964	ENSAPEG00000010735	sf3a1	100	80.203	Amphiprion_percula
ENSSHAG00000003666	SF3A1	97	83.225	ENSATEG00000021201	sf3a1	97	81.641	Anabas_testudineus
ENSSHAG00000003666	SF3A1	96	92.196	ENSAPLG00000009057	SF3A1	99	91.085	Anas_platyrhynchos
ENSSHAG00000003666	SF3A1	97	85.260	ENSACAG00000009415	SF3A1	98	85.088	Anolis_carolinensis
ENSSHAG00000003666	SF3A1	98	95.213	ENSANAG00000032045	SF3A1	99	93.291	Aotus_nancymaae
ENSSHAG00000003666	SF3A1	99	82.211	ENSACLG00000012622	sf3a1	100	81.449	Astatotilapia_calliptera
ENSSHAG00000003666	SF3A1	99	81.330	ENSAMXG00000005382	sf3a1	98	82.705	Astyanax_mexicanus
ENSSHAG00000003666	SF3A1	98	95.602	ENSBTAG00000003390	SF3A1	97	95.472	Bos_taurus
ENSSHAG00000003666	SF3A1	84	41.441	WBGene00004188	prp-21	89	42.857	Caenorhabditis_elegans
ENSSHAG00000003666	SF3A1	98	95.343	ENSCJAG00000010370	SF3A1	99	93.671	Callithrix_jacchus
ENSSHAG00000003666	SF3A1	98	95.213	ENSCAFG00000012559	SF3A1	97	95.213	Canis_familiaris
ENSSHAG00000003666	SF3A1	98	95.213	ENSCAFG00020000838	SF3A1	97	95.213	Canis_lupus_dingo
ENSSHAG00000003666	SF3A1	98	95.472	ENSCHIG00000018642	SF3A1	97	95.343	Capra_hircus
ENSSHAG00000003666	SF3A1	98	95.213	ENSTSYG00000004739	SF3A1	97	95.084	Carlito_syrichta
ENSSHAG00000003666	SF3A1	95	80.000	ENSCAPG00000015414	SF3A1	98	78.933	Cavia_aperea
ENSSHAG00000003666	SF3A1	98	95.213	ENSCPOG00000014589	SF3A1	97	95.213	Cavia_porcellus
ENSSHAG00000003666	SF3A1	98	95.213	ENSCCAG00000032006	SF3A1	99	93.291	Cebus_capucinus
ENSSHAG00000003666	SF3A1	98	95.213	ENSCATG00000029241	SF3A1	99	93.544	Cercocebus_atys
ENSSHAG00000003666	SF3A1	98	95.084	ENSCLAG00000006508	SF3A1	97	94.955	Chinchilla_lanigera
ENSSHAG00000003666	SF3A1	98	95.084	ENSCSAG00000009470	SF3A1	99	93.418	Chlorocebus_sabaeus
ENSSHAG00000003666	SF3A1	61	98.134	ENSCHOG00000005201	SF3A1	69	98.134	Choloepus_hoffmanni
ENSSHAG00000003666	SF3A1	97	90.365	ENSCPBG00000007595	SF3A1	99	88.593	Chrysemys_picta_bellii
ENSSHAG00000003666	SF3A1	97	50.907	ENSCING00000008526	-	67	55.703	Ciona_intestinalis
ENSSHAG00000003666	SF3A1	97	49.681	ENSCSAVG00000005608	-	91	64.286	Ciona_savignyi
ENSSHAG00000003666	SF3A1	98	95.084	ENSCANG00000033564	SF3A1	99	93.418	Colobus_angolensis_palliatus
ENSSHAG00000003666	SF3A1	96	94.737	ENSCGRG00001008933	Sf3a1	99	92.785	Cricetulus_griseus_chok1gshd
ENSSHAG00000003666	SF3A1	96	94.737	ENSCGRG00000006127	Sf3a1	99	92.785	Cricetulus_griseus_crigri
ENSSHAG00000003666	SF3A1	97	80.884	ENSCSEG00000010792	sf3a1	98	79.064	Cynoglossus_semilaevis
ENSSHAG00000003666	SF3A1	97	81.925	ENSCVAG00000004560	sf3a1	98	81.014	Cyprinodon_variegatus
ENSSHAG00000003666	SF3A1	99	81.242	ENSDARG00000041887	sf3a1	99	81.242	Danio_rerio
ENSSHAG00000003666	SF3A1	99	94.508	ENSDNOG00000010629	SF3A1	98	94.508	Dasypus_novemcinctus
ENSSHAG00000003666	SF3A1	98	95.213	ENSDORG00000005613	Sf3a1	99	93.544	Dipodomys_ordii
ENSSHAG00000003666	SF3A1	82	58.394	FBgn0266917	Sf3a1	82	59.300	Drosophila_melanogaster
ENSSHAG00000003666	SF3A1	85	93.114	ENSETEG00000017194	SF3A1	95	92.814	Echinops_telfairi
ENSSHAG00000003666	SF3A1	99	64.294	ENSEBUG00000001285	sf3a1	98	64.286	Eptatretus_burgeri
ENSSHAG00000003666	SF3A1	98	95.343	ENSEASG00005010254	SF3A1	99	93.418	Equus_asinus_asinus
ENSSHAG00000003666	SF3A1	98	95.343	ENSECAG00000023962	SF3A1	99	93.418	Equus_caballus
ENSSHAG00000003666	SF3A1	73	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSSHAG00000003666	SF3A1	97	81.380	ENSELUG00000022578	sf3a1	97	80.859	Esox_lucius
ENSSHAG00000003666	SF3A1	98	95.472	ENSFCAG00000011932	SF3A1	97	95.472	Felis_catus
ENSSHAG00000003666	SF3A1	96	91.258	ENSFALG00000006944	SF3A1	98	89.974	Ficedula_albicollis
ENSSHAG00000003666	SF3A1	98	95.084	ENSFDAG00000009560	SF3A1	97	94.955	Fukomys_damarensis
ENSSHAG00000003666	SF3A1	97	82.490	ENSFHEG00000010866	sf3a1	98	80.934	Fundulus_heteroclitus
ENSSHAG00000003666	SF3A1	97	79.922	ENSGMOG00000016024	sf3a1	97	79.817	Gadus_morhua
ENSSHAG00000003666	SF3A1	96	92.185	ENSGALG00000007937	SF3A1	98	90.617	Gallus_gallus
ENSSHAG00000003666	SF3A1	97	82.092	ENSGAFG00000009111	sf3a1	97	80.523	Gambusia_affinis
ENSSHAG00000003666	SF3A1	97	81.226	ENSGACG00000011893	sf3a1	97	79.922	Gasterosteus_aculeatus
ENSSHAG00000003666	SF3A1	93	90.340	ENSGAGG00000000762	SF3A1	97	90.068	Gopherus_agassizii
ENSSHAG00000003666	SF3A1	98	94.955	ENSGGOG00000012631	SF3A1	98	94.110	Gorilla_gorilla
ENSSHAG00000003666	SF3A1	99	82.211	ENSHBUG00000015795	sf3a1	100	81.449	Haplochromis_burtoni
ENSSHAG00000003666	SF3A1	98	95.213	ENSHGLG00000007907	SF3A1	97	95.213	Heterocephalus_glaber_female
ENSSHAG00000003666	SF3A1	98	95.213	ENSHGLG00100013799	SF3A1	97	95.213	Heterocephalus_glaber_male
ENSSHAG00000003666	SF3A1	99	78.316	ENSHCOG00000015423	sf3a1	100	77.041	Hippocampus_comes
ENSSHAG00000003666	SF3A1	97	80.052	ENSIPUG00000002470	sf3a1	98	79.400	Ictalurus_punctatus
ENSSHAG00000003666	SF3A1	98	95.472	ENSSTOG00000013892	SF3A1	99	93.797	Ictidomys_tridecemlineatus
ENSSHAG00000003666	SF3A1	98	95.466	ENSJJAG00000022566	Sf3a1	97	95.337	Jaculus_jaculus
ENSSHAG00000003666	SF3A1	99	81.043	ENSKMAG00000002400	sf3a1	100	79.771	Kryptolebias_marmoratus
ENSSHAG00000003666	SF3A1	97	81.453	ENSLBEG00000022974	sf3a1	99	78.580	Labrus_bergylta
ENSSHAG00000003666	SF3A1	99	82.554	ENSLACG00000003565	SF3A1	100	84.071	Latimeria_chalumnae
ENSSHAG00000003666	SF3A1	99	83.122	ENSLOCG00000008251	sf3a1	99	83.122	Lepisosteus_oculatus
ENSSHAG00000003666	SF3A1	99	59.647	ENSLAFG00000026032	-	99	58.166	Loxodonta_africana
ENSSHAG00000003666	SF3A1	98	94.696	ENSLAFG00000000448	SF3A1	99	93.165	Loxodonta_africana
ENSSHAG00000003666	SF3A1	98	94.955	ENSMFAG00000031979	SF3A1	99	93.291	Macaca_fascicularis
ENSSHAG00000003666	SF3A1	98	94.955	ENSMMUG00000005547	SF3A1	99	93.291	Macaca_mulatta
ENSSHAG00000003666	SF3A1	98	94.825	ENSMNEG00000037229	SF3A1	99	93.165	Macaca_nemestrina
ENSSHAG00000003666	SF3A1	98	95.084	ENSMLEG00000041908	SF3A1	99	93.418	Mandrillus_leucophaeus
ENSSHAG00000003666	SF3A1	97	83.139	ENSMAMG00000006460	sf3a1	96	82.620	Mastacembelus_armatus
ENSSHAG00000003666	SF3A1	99	82.211	ENSMZEG00005009633	sf3a1	100	81.449	Maylandia_zebra
ENSSHAG00000003666	SF3A1	96	92.185	ENSMGAG00000001330	SF3A1	100	91.074	Meleagris_gallopavo
ENSSHAG00000003666	SF3A1	93	90.847	ENSMAUG00000020317	Sf3a1	94	90.710	Mesocricetus_auratus
ENSSHAG00000003666	SF3A1	98	94.955	ENSMICG00000010038	SF3A1	99	93.291	Microcebus_murinus
ENSSHAG00000003666	SF3A1	98	94.696	ENSMOCG00000008438	Sf3a1	99	93.038	Microtus_ochrogaster
ENSSHAG00000003666	SF3A1	99	79.310	ENSMMOG00000015588	sf3a1	99	78.672	Mola_mola
ENSSHAG00000003666	SF3A1	98	97.017	ENSMODG00000009270	SF3A1	97	97.017	Monodelphis_domestica
ENSSHAG00000003666	SF3A1	97	83.508	ENSMALG00000000148	sf3a1	99	81.471	Monopterus_albus
ENSSHAG00000003666	SF3A1	98	93.935	MGP_CAROLIEiJ_G0016029	Sf3a1	99	92.803	Mus_caroli
ENSSHAG00000003666	SF3A1	98	93.935	ENSMUSG00000002129	Sf3a1	99	92.803	Mus_musculus
ENSSHAG00000003666	SF3A1	98	93.806	MGP_PahariEiJ_G0016862	Sf3a1	99	92.803	Mus_pahari
ENSSHAG00000003666	SF3A1	98	93.935	MGP_SPRETEiJ_G0016870	Sf3a1	99	92.803	Mus_spretus
ENSSHAG00000003666	SF3A1	98	95.343	ENSMPUG00000013144	SF3A1	97	95.343	Mustela_putorius_furo
ENSSHAG00000003666	SF3A1	98	95.343	ENSMLUG00000002139	SF3A1	99	93.671	Myotis_lucifugus
ENSSHAG00000003666	SF3A1	98	94.825	ENSNGAG00000016977	Sf3a1	99	92.911	Nannospalax_galili
ENSSHAG00000003666	SF3A1	96	84.058	ENSNBRG00000016642	sf3a1	96	83.267	Neolamprologus_brichardi
ENSSHAG00000003666	SF3A1	98	95.084	ENSNLEG00000003686	SF3A1	99	93.418	Nomascus_leucogenys
ENSSHAG00000003666	SF3A1	94	86.856	ENSMEUG00000008741	SF3A1	99	85.430	Notamacropus_eugenii
ENSSHAG00000003666	SF3A1	97	94.668	ENSOPRG00000016636	SF3A1	97	94.696	Ochotona_princeps
ENSSHAG00000003666	SF3A1	98	95.078	ENSODEG00000002571	SF3A1	97	95.078	Octodon_degus
ENSSHAG00000003666	SF3A1	99	80.457	ENSONIG00000010848	sf3a1	100	80.838	Oreochromis_niloticus
ENSSHAG00000003666	SF3A1	98	95.213	ENSOCUG00000007633	SF3A1	97	95.084	Oryctolagus_cuniculus
ENSSHAG00000003666	SF3A1	92	81.122	ENSORLG00000013050	sf3a1	99	79.310	Oryzias_latipes
ENSSHAG00000003666	SF3A1	92	81.943	ENSORLG00020003236	sf3a1	95	79.443	Oryzias_latipes_hni
ENSSHAG00000003666	SF3A1	99	80.076	ENSORLG00015017411	sf3a1	100	79.695	Oryzias_latipes_hsok
ENSSHAG00000003666	SF3A1	97	81.806	ENSOMEG00000013362	sf3a1	100	79.288	Oryzias_melastigma
ENSSHAG00000003666	SF3A1	98	95.084	ENSOGAG00000012931	SF3A1	97	94.955	Otolemur_garnettii
ENSSHAG00000003666	SF3A1	98	93.402	ENSOARG00000006849	SF3A1	97	93.273	Ovis_aries
ENSSHAG00000003666	SF3A1	98	93.920	ENSPPAG00000041790	SF3A1	98	93.214	Pan_paniscus
ENSSHAG00000003666	SF3A1	98	95.472	ENSPPRG00000004391	SF3A1	97	95.472	Panthera_pardus
ENSSHAG00000003666	SF3A1	97	95.319	ENSPTIG00000000844	SF3A1	99	95.319	Panthera_tigris_altaica
ENSSHAG00000003666	SF3A1	98	94.955	ENSPTRG00000014240	SF3A1	98	94.110	Pan_troglodytes
ENSSHAG00000003666	SF3A1	98	95.084	ENSPANG00000020772	SF3A1	99	93.418	Papio_anubis
ENSSHAG00000003666	SF3A1	83	95.604	ENSPSIG00000012803	SF3A1	96	95.604	Pelodiscus_sinensis
ENSSHAG00000003666	SF3A1	97	81.545	ENSPMGG00000023096	sf3a1	100	81.127	Periophthalmus_magnuspinnatus
ENSSHAG00000003666	SF3A1	96	95.000	ENSPEMG00000009494	Sf3a1	99	93.038	Peromyscus_maniculatus_bairdii
ENSSHAG00000003666	SF3A1	65	77.821	ENSPMAG00000007139	-	89	76.604	Petromyzon_marinus
ENSSHAG00000003666	SF3A1	98	96.628	ENSPCIG00000022692	SF3A1	97	96.628	Phascolarctos_cinereus
ENSSHAG00000003666	SF3A1	93	76.054	ENSPFOG00000016768	sf3a1	93	74.422	Poecilia_formosa
ENSSHAG00000003666	SF3A1	97	82.353	ENSPLAG00000017268	sf3a1	97	80.784	Poecilia_latipinna
ENSSHAG00000003666	SF3A1	84	82.078	ENSPMEG00000019811	sf3a1	98	80.543	Poecilia_mexicana
ENSSHAG00000003666	SF3A1	97	82.484	ENSPREG00000010347	sf3a1	97	81.176	Poecilia_reticulata
ENSSHAG00000003666	SF3A1	98	95.084	ENSPPYG00000011707	SF3A1	99	93.418	Pongo_abelii
ENSSHAG00000003666	SF3A1	57	97.170	ENSPCAG00000003266	SF3A1	57	97.170	Procavia_capensis
ENSSHAG00000003666	SF3A1	98	95.084	ENSPCOG00000026630	SF3A1	99	93.418	Propithecus_coquereli
ENSSHAG00000003666	SF3A1	94	94.228	ENSPVAG00000017719	SF3A1	94	94.228	Pteropus_vampyrus
ENSSHAG00000003666	SF3A1	99	82.338	ENSPNYG00000018706	sf3a1	100	81.576	Pundamilia_nyererei
ENSSHAG00000003666	SF3A1	98	80.928	ENSPNAG00000003721	sf3a1	99	80.799	Pygocentrus_nattereri
ENSSHAG00000003666	SF3A1	98	94.308	ENSRNOG00000005218	Sf3a1	99	92.929	Rattus_norvegicus
ENSSHAG00000003666	SF3A1	98	95.084	ENSRBIG00000032167	SF3A1	99	93.418	Rhinopithecus_bieti
ENSSHAG00000003666	SF3A1	98	95.084	ENSRROG00000044908	SF3A1	99	93.418	Rhinopithecus_roxellana
ENSSHAG00000003666	SF3A1	93	95.089	ENSSBOG00000021960	SF3A1	98	95.023	Saimiri_boliviensis_boliviensis
ENSSHAG00000003666	SF3A1	97	82.705	ENSSFOG00015004579	sf3a1	100	80.886	Scleropages_formosus
ENSSHAG00000003666	SF3A1	99	79.389	ENSSMAG00000004275	sf3a1	100	78.753	Scophthalmus_maximus
ENSSHAG00000003666	SF3A1	97	82.620	ENSSDUG00000022219	sf3a1	100	79.517	Seriola_dumerili
ENSSHAG00000003666	SF3A1	97	82.620	ENSSLDG00000012642	sf3a1	100	79.517	Seriola_lalandi_dorsalis
ENSSHAG00000003666	SF3A1	98	91.839	ENSSARG00000005960	SF3A1	99	91.808	Sorex_araneus
ENSSHAG00000003666	SF3A1	96	90.791	ENSSPUG00000018863	SF3A1	98	90.921	Sphenodon_punctatus
ENSSHAG00000003666	SF3A1	97	83.791	ENSSPAG00000011856	sf3a1	100	80.203	Stegastes_partitus
ENSSHAG00000003666	SF3A1	98	95.472	ENSSSCG00000010002	SF3A1	97	95.343	Sus_scrofa
ENSSHAG00000003666	SF3A1	96	92.206	ENSTGUG00000010547	SF3A1	99	91.299	Taeniopygia_guttata
ENSSHAG00000003666	SF3A1	98	79.974	ENSTRUG00000006118	sf3a1	99	78.553	Takifugu_rubripes
ENSSHAG00000003666	SF3A1	61	79.926	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSSHAG00000003666	SF3A1	98	87.840	ENSTBEG00000012771	SF3A1	99	86.076	Tupaia_belangeri
ENSSHAG00000003666	SF3A1	98	94.315	ENSTTRG00000001535	SF3A1	97	94.315	Tursiops_truncatus
ENSSHAG00000003666	SF3A1	97	94.133	ENSUAMG00000006750	SF3A1	96	94.133	Ursus_americanus
ENSSHAG00000003666	SF3A1	99	93.878	ENSUMAG00000016665	SF3A1	100	93.182	Ursus_maritimus
ENSSHAG00000003666	SF3A1	98	95.213	ENSVVUG00000003075	SF3A1	97	95.213	Vulpes_vulpes
ENSSHAG00000003666	SF3A1	96	86.184	ENSXETG00000016144	sf3a1	97	85.306	Xenopus_tropicalis
ENSSHAG00000003666	SF3A1	97	81.830	ENSXCOG00000015653	sf3a1	97	80.261	Xiphophorus_couchianus
ENSSHAG00000003666	SF3A1	97	81.961	ENSXMAG00000002753	sf3a1	97	80.392	Xiphophorus_maculatus