EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000003833 (Gene tree)
Gene ID: 100933294
Gene Symbol: PTCD2
Alias: FLJ12598
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 40399 bases
Position: chrGL842623.1:76877-117275
Accession: 25734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000004354	MRP-S27	PF10037.9	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000004398	PTCD2-201	1164	-	ENSSHAP00000004354	387 (aa)	-	G3VME9

Gene Model

Click here to download ENSSHAG00000003833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000003833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000003833	PTCD2	99	59.115	ENSG00000049883	PTCD2	99	59.115	Homo_sapiens
ENSSHAG00000003833	PTCD2	97	44.800	ENSAPOG00000020682	ptcd2	97	44.800	Acanthochromis_polyacanthus
ENSSHAG00000003833	PTCD2	96	59.786	ENSAMEG00000007194	PTCD2	96	59.786	Ailuropoda_melanoleuca
ENSSHAG00000003833	PTCD2	89	40.688	ENSACIG00000002053	ptcd2	100	40.688	Amphilophus_citrinellus
ENSSHAG00000003833	PTCD2	98	44.180	ENSAOCG00000006616	ptcd2	96	44.180	Amphiprion_ocellaris
ENSSHAG00000003833	PTCD2	98	44.180	ENSAPEG00000022926	ptcd2	96	44.180	Amphiprion_percula
ENSSHAG00000003833	PTCD2	99	55.181	ENSACAG00000009747	PTCD2	98	55.181	Anolis_carolinensis
ENSSHAG00000003833	PTCD2	99	61.198	ENSANAG00000029353	PTCD2	99	61.198	Aotus_nancymaae
ENSSHAG00000003833	PTCD2	97	44.297	ENSACLG00000027742	ptcd2	96	44.297	Astatotilapia_calliptera
ENSSHAG00000003833	PTCD2	95	40.270	ENSAMXG00000029404	ptcd2	99	40.270	Astyanax_mexicanus
ENSSHAG00000003833	PTCD2	99	60.938	ENSBTAG00000014675	PTCD2	100	60.938	Bos_taurus
ENSSHAG00000003833	PTCD2	99	60.938	ENSCJAG00000016364	PTCD2	99	60.938	Callithrix_jacchus
ENSSHAG00000003833	PTCD2	99	59.115	ENSCAFG00000007982	PTCD2	90	59.115	Canis_familiaris
ENSSHAG00000003833	PTCD2	89	61.850	ENSCAFG00020019147	PTCD2	97	61.850	Canis_lupus_dingo
ENSSHAG00000003833	PTCD2	95	62.125	ENSCHIG00000017118	PTCD2	96	62.125	Capra_hircus
ENSSHAG00000003833	PTCD2	93	59.777	ENSCPOG00000040168	PTCD2	93	59.777	Cavia_porcellus
ENSSHAG00000003833	PTCD2	82	56.740	ENSCCAG00000021996	-	98	56.740	Cebus_capucinus
ENSSHAG00000003833	PTCD2	99	60.417	ENSCCAG00000029389	-	99	60.417	Cebus_capucinus
ENSSHAG00000003833	PTCD2	99	58.594	ENSCATG00000019069	PTCD2	100	58.594	Cercocebus_atys
ENSSHAG00000003833	PTCD2	95	58.696	ENSCLAG00000000072	PTCD2	96	58.696	Chinchilla_lanigera
ENSSHAG00000003833	PTCD2	99	59.115	ENSCSAG00000015623	PTCD2	100	59.635	Chlorocebus_sabaeus
ENSSHAG00000003833	PTCD2	89	48.276	ENSCHOG00000010634	PTCD2	100	48.276	Choloepus_hoffmanni
ENSSHAG00000003833	PTCD2	99	52.219	ENSCPBG00000000216	PTCD2	98	52.219	Chrysemys_picta_bellii
ENSSHAG00000003833	PTCD2	99	59.375	ENSCANG00000035636	PTCD2	99	59.375	Colobus_angolensis_palliatus
ENSSHAG00000003833	PTCD2	95	58.856	ENSCGRG00001015289	Ptcd2	80	58.856	Cricetulus_griseus_chok1gshd
ENSSHAG00000003833	PTCD2	95	58.856	ENSCGRG00000006193	Ptcd2	80	58.856	Cricetulus_griseus_crigri
ENSSHAG00000003833	PTCD2	99	44.935	ENSCVAG00000001285	ptcd2	97	44.935	Cyprinodon_variegatus
ENSSHAG00000003833	PTCD2	98	42.147	ENSDARG00000035391	ptcd2	98	42.147	Danio_rerio
ENSSHAG00000003833	PTCD2	97	59.733	ENSDNOG00000008719	PTCD2	97	59.733	Dasypus_novemcinctus
ENSSHAG00000003833	PTCD2	99	59.690	ENSDORG00000004921	Ptcd2	100	59.690	Dipodomys_ordii
ENSSHAG00000003833	PTCD2	99	53.608	ENSETEG00000016542	PTCD2	99	53.608	Echinops_telfairi
ENSSHAG00000003833	PTCD2	98	58.140	ENSEASG00005018038	PTCD2	99	58.140	Equus_asinus_asinus
ENSSHAG00000003833	PTCD2	98	58.421	ENSECAG00000007022	PTCD2	98	58.421	Equus_caballus
ENSSHAG00000003833	PTCD2	100	57.106	ENSEEUG00000014031	PTCD2	99	57.106	Erinaceus_europaeus
ENSSHAG00000003833	PTCD2	94	45.055	ENSELUG00000003584	ptcd2	95	45.055	Esox_lucius
ENSSHAG00000003833	PTCD2	99	54.688	ENSFCAG00000045432	PTCD2	82	54.688	Felis_catus
ENSSHAG00000003833	PTCD2	84	50.153	ENSFALG00000010299	PTCD2	99	50.153	Ficedula_albicollis
ENSSHAG00000003833	PTCD2	93	60.615	ENSFDAG00000018461	PTCD2	93	60.615	Fukomys_damarensis
ENSSHAG00000003833	PTCD2	90	45.584	ENSGMOG00000003637	ptcd2	91	45.584	Gadus_morhua
ENSSHAG00000003833	PTCD2	92	48.179	ENSGALG00000038260	PTCD2	99	46.997	Gallus_gallus
ENSSHAG00000003833	PTCD2	99	56.136	ENSGAGG00000021952	PTCD2	98	56.136	Gopherus_agassizii
ENSSHAG00000003833	PTCD2	99	59.115	ENSGGOG00000010695	PTCD2	99	59.115	Gorilla_gorilla
ENSSHAG00000003833	PTCD2	97	44.032	ENSHBUG00000009191	ptcd2	96	44.032	Haplochromis_burtoni
ENSSHAG00000003833	PTCD2	92	60.504	ENSHGLG00000001234	PTCD2	93	60.504	Heterocephalus_glaber_female
ENSSHAG00000003833	PTCD2	92	60.504	ENSHGLG00100015419	PTCD2	93	60.504	Heterocephalus_glaber_male
ENSSHAG00000003833	PTCD2	85	45.921	ENSHCOG00000001703	ptcd2	92	45.098	Hippocampus_comes
ENSSHAG00000003833	PTCD2	87	44.776	ENSIPUG00000006080	ptcd2	91	44.857	Ictalurus_punctatus
ENSSHAG00000003833	PTCD2	99	58.854	ENSSTOG00000006596	PTCD2	100	58.854	Ictidomys_tridecemlineatus
ENSSHAG00000003833	PTCD2	93	60.615	ENSJJAG00000024388	Ptcd2	93	60.615	Jaculus_jaculus
ENSSHAG00000003833	PTCD2	96	41.892	ENSKMAG00000009329	ptcd2	96	41.892	Kryptolebias_marmoratus
ENSSHAG00000003833	PTCD2	91	44.000	ENSLBEG00000024871	ptcd2	96	44.000	Labrus_bergylta
ENSSHAG00000003833	PTCD2	97	49.471	ENSLOCG00000011122	ptcd2	97	49.471	Lepisosteus_oculatus
ENSSHAG00000003833	PTCD2	81	64.103	ENSLAFG00000004115	PTCD2	100	64.103	Loxodonta_africana
ENSSHAG00000003833	PTCD2	99	58.854	ENSMFAG00000031516	PTCD2	99	58.854	Macaca_fascicularis
ENSSHAG00000003833	PTCD2	99	59.115	ENSMNEG00000007537	PTCD2	100	59.115	Macaca_nemestrina
ENSSHAG00000003833	PTCD2	99	58.854	ENSMLEG00000031093	PTCD2	99	58.854	Mandrillus_leucophaeus
ENSSHAG00000003833	PTCD2	95	45.528	ENSMAMG00000018529	ptcd2	97	45.528	Mastacembelus_armatus
ENSSHAG00000003833	PTCD2	97	44.297	ENSMZEG00005003625	ptcd2	96	44.297	Maylandia_zebra
ENSSHAG00000003833	PTCD2	90	49.425	ENSMGAG00000005033	PTCD2	100	49.425	Meleagris_gallopavo
ENSSHAG00000003833	PTCD2	93	44.972	ENSMAUG00000020253	Ptcd2	93	44.972	Mesocricetus_auratus
ENSSHAG00000003833	PTCD2	100	59.432	ENSMICG00000004535	PTCD2	99	59.432	Microcebus_murinus
ENSSHAG00000003833	PTCD2	93	58.380	ENSMOCG00000019985	Ptcd2	94	58.380	Microtus_ochrogaster
ENSSHAG00000003833	PTCD2	99	77.083	ENSMODG00000001695	PTCD2	100	77.083	Monodelphis_domestica
ENSSHAG00000003833	PTCD2	94	45.628	ENSMALG00000022372	ptcd2	96	45.628	Monopterus_albus
ENSSHAG00000003833	PTCD2	95	56.640	MGP_CAROLIEiJ_G0018829	Ptcd2	97	56.640	Mus_caroli
ENSSHAG00000003833	PTCD2	95	56.369	ENSMUSG00000021650	Ptcd2	97	56.369	Mus_musculus
ENSSHAG00000003833	PTCD2	93	57.821	MGP_PahariEiJ_G0015904	Ptcd2	94	57.821	Mus_pahari
ENSSHAG00000003833	PTCD2	95	57.182	MGP_SPRETEiJ_G0019711	Ptcd2	97	57.182	Mus_spretus
ENSSHAG00000003833	PTCD2	99	59.635	ENSMPUG00000014401	PTCD2	100	59.635	Mustela_putorius_furo
ENSSHAG00000003833	PTCD2	91	61.364	ENSMLUG00000007374	PTCD2	99	58.333	Myotis_lucifugus
ENSSHAG00000003833	PTCD2	97	56.693	ENSNGAG00000005027	Ptcd2	99	56.693	Nannospalax_galili
ENSSHAG00000003833	PTCD2	85	44.411	ENSNBRG00000000092	-	100	44.411	Neolamprologus_brichardi
ENSSHAG00000003833	PTCD2	97	44.562	ENSNBRG00000008174	ptcd2	97	44.562	Neolamprologus_brichardi
ENSSHAG00000003833	PTCD2	99	58.594	ENSNLEG00000004516	PTCD2	99	58.594	Nomascus_leucogenys
ENSSHAG00000003833	PTCD2	99	59.383	ENSMEUG00000014012	-	99	59.383	Notamacropus_eugenii
ENSSHAG00000003833	PTCD2	99	55.065	ENSOPRG00000007290	PTCD2	99	55.065	Ochotona_princeps
ENSSHAG00000003833	PTCD2	93	58.056	ENSODEG00000016417	PTCD2	94	58.056	Octodon_degus
ENSSHAG00000003833	PTCD2	81	44.937	ENSONIG00000011269	ptcd2	91	44.937	Oreochromis_niloticus
ENSSHAG00000003833	PTCD2	93	60.335	ENSOCUG00000007970	PTCD2	100	58.333	Oryctolagus_cuniculus
ENSSHAG00000003833	PTCD2	92	44.225	ENSORLG00000003851	ptcd2	91	44.225	Oryzias_latipes
ENSSHAG00000003833	PTCD2	92	43.662	ENSORLG00020009823	ptcd2	92	43.662	Oryzias_latipes_hni
ENSSHAG00000003833	PTCD2	89	44.413	ENSORLG00015016777	ptcd2	99	44.413	Oryzias_latipes_hsok
ENSSHAG00000003833	PTCD2	89	45.087	ENSOMEG00000012396	ptcd2	84	45.087	Oryzias_melastigma
ENSSHAG00000003833	PTCD2	99	58.854	ENSOGAG00000008390	PTCD2	99	58.854	Otolemur_garnettii
ENSSHAG00000003833	PTCD2	99	60.156	ENSOARG00000005087	PTCD2	99	60.156	Ovis_aries
ENSSHAG00000003833	PTCD2	99	59.115	ENSPPAG00000028480	PTCD2	99	59.115	Pan_paniscus
ENSSHAG00000003833	PTCD2	99	58.854	ENSPTRG00000016968	PTCD2	99	58.854	Pan_troglodytes
ENSSHAG00000003833	PTCD2	89	61.739	ENSPANG00000006611	PTCD2	89	61.739	Papio_anubis
ENSSHAG00000003833	PTCD2	91	46.328	ENSPKIG00000019896	ptcd2	92	46.328	Paramormyrops_kingsleyae
ENSSHAG00000003833	PTCD2	81	58.786	ENSPSIG00000014559	PTCD2	97	58.786	Pelodiscus_sinensis
ENSSHAG00000003833	PTCD2	91	59.551	ENSPEMG00000000884	Ptcd2	93	59.551	Peromyscus_maniculatus_bairdii
ENSSHAG00000003833	PTCD2	99	80.208	ENSPCIG00000029047	PTCD2	100	80.208	Phascolarctos_cinereus
ENSSHAG00000003833	PTCD2	93	44.475	ENSPLAG00000010456	ptcd2	99	44.675	Poecilia_latipinna
ENSSHAG00000003833	PTCD2	99	45.195	ENSPREG00000021797	ptcd2	97	45.195	Poecilia_reticulata
ENSSHAG00000003833	PTCD2	99	52.865	ENSPPYG00000015543	PTCD2	99	52.865	Pongo_abelii
ENSSHAG00000003833	PTCD2	80	52.581	ENSPCAG00000006806	PTCD2	98	52.581	Procavia_capensis
ENSSHAG00000003833	PTCD2	99	58.594	ENSPVAG00000010935	PTCD2	99	58.594	Pteropus_vampyrus
ENSSHAG00000003833	PTCD2	97	44.297	ENSPNYG00000003122	ptcd2	96	44.297	Pundamilia_nyererei
ENSSHAG00000003833	PTCD2	97	46.174	ENSPNAG00000021490	ptcd2	97	46.702	Pygocentrus_nattereri
ENSSHAG00000003833	PTCD2	96	57.258	ENSRNOG00000028403	Ptcd2	97	57.258	Rattus_norvegicus
ENSSHAG00000003833	PTCD2	99	53.906	ENSRBIG00000032929	PTCD2	99	53.906	Rhinopithecus_bieti
ENSSHAG00000003833	PTCD2	99	58.594	ENSRROG00000000080	PTCD2	100	58.594	Rhinopithecus_roxellana
ENSSHAG00000003833	PTCD2	99	60.156	ENSSBOG00000018911	PTCD2	100	60.156	Saimiri_boliviensis_boliviensis
ENSSHAG00000003833	PTCD2	91	44.318	ENSSFOG00015015415	ptcd2	91	44.318	Scleropages_formosus
ENSSHAG00000003833	PTCD2	99	41.878	ENSSMAG00000010350	ptcd2	99	41.878	Scophthalmus_maximus
ENSSHAG00000003833	PTCD2	94	44.628	ENSSDUG00000008142	ptcd2	91	44.628	Seriola_dumerili
ENSSHAG00000003833	PTCD2	94	44.628	ENSSLDG00000015284	ptcd2	95	44.628	Seriola_lalandi_dorsalis
ENSSHAG00000003833	PTCD2	81	53.846	ENSSARG00000004983	PTCD2	99	53.846	Sorex_araneus
ENSSHAG00000003833	PTCD2	99	50.390	ENSSPUG00000000176	PTCD2	96	50.390	Sphenodon_punctatus
ENSSHAG00000003833	PTCD2	97	44.533	ENSSPAG00000008591	ptcd2	96	44.533	Stegastes_partitus
ENSSHAG00000003833	PTCD2	98	60.263	ENSSSCG00000016975	PTCD2	89	60.263	Sus_scrofa
ENSSHAG00000003833	PTCD2	86	53.172	ENSTGUG00000005705	PTCD2	96	53.172	Taeniopygia_guttata
ENSSHAG00000003833	PTCD2	98	56.693	ENSTBEG00000016559	PTCD2	98	56.693	Tupaia_belangeri
ENSSHAG00000003833	PTCD2	95	62.125	ENSTTRG00000011851	PTCD2	94	62.125	Tursiops_truncatus
ENSSHAG00000003833	PTCD2	99	58.854	ENSUAMG00000007583	PTCD2	90	58.961	Ursus_americanus
ENSSHAG00000003833	PTCD2	99	58.594	ENSUMAG00000007666	PTCD2	100	58.594	Ursus_maritimus
ENSSHAG00000003833	PTCD2	93	60.615	ENSVPAG00000009597	PTCD2	92	60.615	Vicugna_pacos
ENSSHAG00000003833	PTCD2	99	58.594	ENSVVUG00000007299	-	100	58.854	Vulpes_vulpes
ENSSHAG00000003833	PTCD2	99	51.938	ENSXETG00000031652	PTCD2	100	51.938	Xenopus_tropicalis
ENSSHAG00000003833	PTCD2	88	44.868	ENSXMAG00000005940	ptcd2	86	44.077	Xiphophorus_maculatus