EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000004043 (Gene tree)
Gene ID: 100925274
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 6163 bases
Position: chrGL856997.1:85726-91888
Accession: 10771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000004600	RRM_1	PF00076.22	1.4e-36	1	2
ENSSHAP00000004600	RRM_1	PF00076.22	1.4e-36	2	2
ENSSHAP00000004601	RRM_1	PF00076.22	3.1e-36	1	2
ENSSHAP00000004601	RRM_1	PF00076.22	3.1e-36	2	2
ENSSHAP00000004602	RRM_1	PF00076.22	1.3e-30	1	2
ENSSHAP00000004602	RRM_1	PF00076.22	1.3e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000004650	SF3B4-203	2966	-	ENSSHAP00000004602	381 (aa)	-	G3VN47
ENSSHAT00000004648	SF3B4-201	2946	-	ENSSHAP00000004600	418 (aa)	-	G3VN45
ENSSHAT00000004649	SF3B4-202	2937	-	ENSSHAP00000004601	415 (aa)	-	G3VN46

Gene Model

Click here to download ENSSHAG00000004043's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000004043's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000004043	SF3B4	70	33.071	ENSSHAG00000011267	PABPC1	52	33.582
ENSSHAG00000004043	SF3B4	72	38.150	ENSSHAG00000003431	-	57	38.150

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000004043	SF3B4	100	98.688	ENSG00000143368	SF3B4	100	99.474	Homo_sapiens
ENSSHAG00000004043	SF3B4	56	92.083	ENSAPOG00000017647	sf3b4	77	78.997	Acanthochromis_polyacanthus
ENSSHAG00000004043	SF3B4	100	98.950	ENSAMEG00000010073	SF3B4	100	96.698	Ailuropoda_melanoleuca
ENSSHAG00000004043	SF3B4	56	92.083	ENSAOCG00000019801	sf3b4	77	78.997	Amphiprion_ocellaris
ENSSHAG00000004043	SF3B4	56	92.083	ENSAPEG00000010365	sf3b4	77	78.997	Amphiprion_percula
ENSSHAG00000004043	SF3B4	56	91.667	ENSATEG00000012844	sf3b4	76	78.125	Anabas_testudineus
ENSSHAG00000004043	SF3B4	61	92.015	ENSACAG00000010019	SF3B4	90	87.467	Anolis_carolinensis
ENSSHAG00000004043	SF3B4	100	98.688	ENSANAG00000031025	SF3B4	100	96.462	Aotus_nancymaae
ENSSHAG00000004043	SF3B4	56	91.250	ENSACLG00000014260	sf3b4	76	78.056	Astatotilapia_calliptera
ENSSHAG00000004043	SF3B4	56	91.667	ENSAMXG00000008282	sf3b4	60	91.667	Astyanax_mexicanus
ENSSHAG00000004043	SF3B4	100	98.950	ENSBTAG00000012495	SF3B4	100	96.698	Bos_taurus
ENSSHAG00000004043	SF3B4	89	97.941	ENSBTAG00000012793	-	88	98.039	Bos_taurus
ENSSHAG00000004043	SF3B4	89	81.443	ENSCJAG00000042351	SF3B4	87	81.443	Callithrix_jacchus
ENSSHAG00000004043	SF3B4	100	98.425	ENSCAFG00000011617	SF3B4	100	96.226	Canis_familiaris
ENSSHAG00000004043	SF3B4	100	98.425	ENSCAFG00020019775	SF3B4	100	96.226	Canis_lupus_dingo
ENSSHAG00000004043	SF3B4	100	98.950	ENSCHIG00000025663	-	100	96.698	Capra_hircus
ENSSHAG00000004043	SF3B4	100	98.688	ENSTSYG00000009295	SF3B4	100	96.462	Carlito_syrichta
ENSSHAG00000004043	SF3B4	100	98.688	ENSCPOG00000008267	SF3B4	100	96.462	Cavia_porcellus
ENSSHAG00000004043	SF3B4	100	84.817	ENSCCAG00000019823	-	71	90.698	Cebus_capucinus
ENSSHAG00000004043	SF3B4	100	84.928	ENSCCAG00000021751	-	69	89.198	Cebus_capucinus
ENSSHAG00000004043	SF3B4	100	98.688	ENSCATG00000033114	SF3B4	100	96.462	Cercocebus_atys
ENSSHAG00000004043	SF3B4	100	98.688	ENSCLAG00000015851	SF3B4	100	96.462	Chinchilla_lanigera
ENSSHAG00000004043	SF3B4	100	98.688	ENSCSAG00000018129	SF3B4	100	96.462	Chlorocebus_sabaeus
ENSSHAG00000004043	SF3B4	99	84.777	ENSCPBG00000008041	SF3B4	91	88.281	Chrysemys_picta_bellii
ENSSHAG00000004043	SF3B4	50	85.096	ENSCING00000002337	-	54	89.286	Ciona_intestinalis
ENSSHAG00000004043	SF3B4	100	98.688	ENSCANG00000035579	SF3B4	100	96.462	Colobus_angolensis_palliatus
ENSSHAG00000004043	SF3B4	100	98.688	ENSCGRG00001003590	Sf3b4	100	96.462	Cricetulus_griseus_chok1gshd
ENSSHAG00000004043	SF3B4	100	98.688	ENSCGRG00000016914	Sf3b4	100	96.462	Cricetulus_griseus_crigri
ENSSHAG00000004043	SF3B4	56	91.667	ENSDARG00000018574	sf3b4	77	77.429	Danio_rerio
ENSSHAG00000004043	SF3B4	100	98.950	ENSDNOG00000048908	-	99	96.845	Dasypus_novemcinctus
ENSSHAG00000004043	SF3B4	100	78.740	ENSDNOG00000037231	-	76	79.553	Dasypus_novemcinctus
ENSSHAG00000004043	SF3B4	100	98.950	ENSDORG00000016366	Sf3b4	100	96.698	Dipodomys_ordii
ENSSHAG00000004043	SF3B4	76	89.198	ENSETEG00000008963	SF3B4	76	89.198	Echinops_telfairi
ENSSHAG00000004043	SF3B4	100	98.950	ENSEASG00005001477	SF3B4	100	96.698	Equus_asinus_asinus
ENSSHAG00000004043	SF3B4	100	98.950	ENSECAG00000024737	SF3B4	100	96.698	Equus_caballus
ENSSHAG00000004043	SF3B4	100	98.950	ENSFCAG00000010106	SF3B4	100	96.698	Felis_catus
ENSSHAG00000004043	SF3B4	100	98.688	ENSFDAG00000009286	SF3B4	100	96.462	Fukomys_damarensis
ENSSHAG00000004043	SF3B4	54	91.964	ENSGMOG00000002519	sf3b4	67	92.544	Gadus_morhua
ENSSHAG00000004043	SF3B4	99	88.158	ENSGALG00000013352	SF3B4	90	87.206	Gallus_gallus
ENSSHAG00000004043	SF3B4	62	88.302	ENSGAFG00000010181	sf3b4	58	92.982	Gambusia_affinis
ENSSHAG00000004043	SF3B4	99	84.514	ENSGAGG00000025055	SF3B4	79	88.021	Gopherus_agassizii
ENSSHAG00000004043	SF3B4	100	98.688	ENSGGOG00000004761	SF3B4	100	96.462	Gorilla_gorilla
ENSSHAG00000004043	SF3B4	100	70.755	ENSGGOG00000038845	-	54	85.238	Gorilla_gorilla
ENSSHAG00000004043	SF3B4	56	91.250	ENSHBUG00000002028	sf3b4	76	78.056	Haplochromis_burtoni
ENSSHAG00000004043	SF3B4	100	98.688	ENSHGLG00000012360	SF3B4	100	96.462	Heterocephalus_glaber_female
ENSSHAG00000004043	SF3B4	100	97.375	ENSHGLG00100008533	SF3B4	100	95.283	Heterocephalus_glaber_male
ENSSHAG00000004043	SF3B4	50	94.203	ENSHCOG00000003014	sf3b4	57	91.667	Hippocampus_comes
ENSSHAG00000004043	SF3B4	53	95.890	ENSIPUG00000012242	Sf3b4	77	77.812	Ictalurus_punctatus
ENSSHAG00000004043	SF3B4	100	98.950	ENSSTOG00000000684	-	100	96.698	Ictidomys_tridecemlineatus
ENSSHAG00000004043	SF3B4	94	69.466	ENSSTOG00000029627	-	69	68.212	Ictidomys_tridecemlineatus
ENSSHAG00000004043	SF3B4	75	83.621	ENSJJAG00000022500	Sf3b4	95	83.621	Jaculus_jaculus
ENSSHAG00000004043	SF3B4	55	91.561	ENSKMAG00000008154	sf3b4	58	93.421	Kryptolebias_marmoratus
ENSSHAG00000004043	SF3B4	54	92.704	ENSLBEG00000026818	sf3b4	57	93.421	Labrus_bergylta
ENSSHAG00000004043	SF3B4	57	90.717	ENSLACG00000004436	SF3B4	87	82.500	Latimeria_chalumnae
ENSSHAG00000004043	SF3B4	57	91.139	ENSLOCG00000009048	sf3b4	75	82.132	Lepisosteus_oculatus
ENSSHAG00000004043	SF3B4	100	98.429	ENSLAFG00000008531	SF3B4	100	96.235	Loxodonta_africana
ENSSHAG00000004043	SF3B4	94	69.806	ENSMFAG00000039067	-	57	78.037	Macaca_fascicularis
ENSSHAG00000004043	SF3B4	100	98.688	ENSMFAG00000042395	SF3B4	100	96.462	Macaca_fascicularis
ENSSHAG00000004043	SF3B4	100	98.688	ENSMMUG00000007256	SF3B4	100	96.462	Macaca_mulatta
ENSSHAG00000004043	SF3B4	100	98.688	ENSMNEG00000031839	SF3B4	100	96.462	Macaca_nemestrina
ENSSHAG00000004043	SF3B4	94	69.252	ENSMNEG00000031526	-	57	77.570	Macaca_nemestrina
ENSSHAG00000004043	SF3B4	100	98.688	ENSMLEG00000038667	SF3B4	100	96.462	Mandrillus_leucophaeus
ENSSHAG00000004043	SF3B4	56	92.500	ENSMAMG00000014692	sf3b4	60	92.500	Mastacembelus_armatus
ENSSHAG00000004043	SF3B4	56	91.250	ENSMZEG00005026741	sf3b4	76	78.056	Maylandia_zebra
ENSSHAG00000004043	SF3B4	99	86.842	ENSMGAG00000000653	SF3B4	91	85.233	Meleagris_gallopavo
ENSSHAG00000004043	SF3B4	100	98.688	ENSMAUG00000015266	Sf3b4	100	96.462	Mesocricetus_auratus
ENSSHAG00000004043	SF3B4	100	98.950	ENSMICG00000044961	SF3B4	100	96.698	Microcebus_murinus
ENSSHAG00000004043	SF3B4	100	98.688	ENSMOCG00000013658	-	100	96.462	Microtus_ochrogaster
ENSSHAG00000004043	SF3B4	100	92.126	ENSMOCG00000014155	-	97	93.548	Microtus_ochrogaster
ENSSHAG00000004043	SF3B4	54	92.857	ENSMMOG00000018032	sf3b4	58	92.982	Mola_mola
ENSSHAG00000004043	SF3B4	100	99.738	ENSMODG00000018767	SF3B4	100	97.406	Monodelphis_domestica
ENSSHAG00000004043	SF3B4	53	92.952	ENSMALG00000006174	sf3b4	57	92.544	Monopterus_albus
ENSSHAG00000004043	SF3B4	100	98.425	MGP_CAROLIEiJ_G0025365	Sf3b4	100	96.226	Mus_caroli
ENSSHAG00000004043	SF3B4	100	98.688	ENSMUSG00000068856	Sf3b4	100	96.462	Mus_musculus
ENSSHAG00000004043	SF3B4	100	98.688	MGP_PahariEiJ_G0026809	Sf3b4	100	96.462	Mus_pahari
ENSSHAG00000004043	SF3B4	100	98.688	MGP_SPRETEiJ_G0026309	Sf3b4	100	96.462	Mus_spretus
ENSSHAG00000004043	SF3B4	100	98.950	ENSMPUG00000005563	SF3B4	100	96.698	Mustela_putorius_furo
ENSSHAG00000004043	SF3B4	100	98.688	ENSMLUG00000010789	SF3B4	100	96.462	Myotis_lucifugus
ENSSHAG00000004043	SF3B4	100	98.425	ENSNGAG00000016337	Sf3b4	100	96.226	Nannospalax_galili
ENSSHAG00000004043	SF3B4	56	91.667	ENSNBRG00000013865	sf3b4	76	78.370	Neolamprologus_brichardi
ENSSHAG00000004043	SF3B4	100	85.227	ENSNLEG00000009693	-	100	67.056	Nomascus_leucogenys
ENSSHAG00000004043	SF3B4	100	74.016	ENSNLEG00000000537	-	82	81.173	Nomascus_leucogenys
ENSSHAG00000004043	SF3B4	81	99.398	ENSMEUG00000003272	SF3B4	82	99.398	Notamacropus_eugenii
ENSSHAG00000004043	SF3B4	99	96.032	ENSOPRG00000010808	SF3B4	99	94.062	Ochotona_princeps
ENSSHAG00000004043	SF3B4	88	73.901	ENSODEG00000008916	-	84	72.930	Octodon_degus
ENSSHAG00000004043	SF3B4	72	86.131	ENSODEG00000003597	-	79	83.596	Octodon_degus
ENSSHAG00000004043	SF3B4	55	90.717	ENSONIG00000002730	sf3b4	57	92.982	Oreochromis_niloticus
ENSSHAG00000004043	SF3B4	96	61.930	ENSOANG00000004768	-	50	80.374	Ornithorhynchus_anatinus
ENSSHAG00000004043	SF3B4	100	98.950	ENSOCUG00000004614	SF3B4	100	96.698	Oryctolagus_cuniculus
ENSSHAG00000004043	SF3B4	54	92.241	ENSORLG00000003062	sf3b4	59	92.982	Oryzias_latipes
ENSSHAG00000004043	SF3B4	54	92.241	ENSORLG00020000687	sf3b4	57	92.982	Oryzias_latipes_hni
ENSSHAG00000004043	SF3B4	54	92.241	ENSORLG00015010989	sf3b4	57	92.982	Oryzias_latipes_hsok
ENSSHAG00000004043	SF3B4	100	98.950	ENSOGAG00000006265	SF3B4	100	96.698	Otolemur_garnettii
ENSSHAG00000004043	SF3B4	86	76.243	ENSOARG00000007368	-	77	76.562	Ovis_aries
ENSSHAG00000004043	SF3B4	100	98.950	ENSOARG00000020718	-	100	96.698	Ovis_aries
ENSSHAG00000004043	SF3B4	100	80.052	ENSPPAG00000030024	-	78	79.630	Pan_paniscus
ENSSHAG00000004043	SF3B4	100	98.688	ENSPPAG00000040904	SF3B4	100	96.462	Pan_paniscus
ENSSHAG00000004043	SF3B4	100	98.950	ENSPPRG00000007384	SF3B4	100	96.698	Panthera_pardus
ENSSHAG00000004043	SF3B4	100	98.950	ENSPTIG00000014530	SF3B4	100	96.698	Panthera_tigris_altaica
ENSSHAG00000004043	SF3B4	100	77.165	ENSPTRG00000049727	-	59	86.017	Pan_troglodytes
ENSSHAG00000004043	SF3B4	100	98.688	ENSPTRG00000001243	SF3B4	100	96.462	Pan_troglodytes
ENSSHAG00000004043	SF3B4	100	98.688	ENSPANG00000005126	SF3B4	100	96.462	Papio_anubis
ENSSHAG00000004043	SF3B4	54	92.704	ENSPKIG00000020669	sf3b4	60	93.421	Paramormyrops_kingsleyae
ENSSHAG00000004043	SF3B4	100	98.688	ENSPEMG00000017568	Sf3b4	100	96.462	Peromyscus_maniculatus_bairdii
ENSSHAG00000004043	SF3B4	60	84.436	ENSPMAG00000007842	-	50	90.094	Petromyzon_marinus
ENSSHAG00000004043	SF3B4	100	99.738	ENSPCIG00000008765	SF3B4	100	97.406	Phascolarctos_cinereus
ENSSHAG00000004043	SF3B4	55	90.717	ENSPFOG00000005754	sf3b4	58	92.544	Poecilia_formosa
ENSSHAG00000004043	SF3B4	55	90.717	ENSPLAG00000001401	sf3b4	63	92.544	Poecilia_latipinna
ENSSHAG00000004043	SF3B4	55	90.717	ENSPREG00000011076	sf3b4	57	92.982	Poecilia_reticulata
ENSSHAG00000004043	SF3B4	59	98.788	ENSPCAG00000000392	SF3B4	60	95.918	Procavia_capensis
ENSSHAG00000004043	SF3B4	100	98.950	ENSPCOG00000015399	SF3B4	100	96.698	Propithecus_coquereli
ENSSHAG00000004043	SF3B4	100	98.950	ENSPVAG00000014171	SF3B4	100	96.698	Pteropus_vampyrus
ENSSHAG00000004043	SF3B4	56	91.250	ENSPNYG00000012700	sf3b4	76	78.056	Pundamilia_nyererei
ENSSHAG00000004043	SF3B4	56	92.083	ENSPNAG00000000686	sf3b4	79	77.500	Pygocentrus_nattereri
ENSSHAG00000004043	SF3B4	100	98.688	ENSRNOG00000021181	Sf3b4	100	96.462	Rattus_norvegicus
ENSSHAG00000004043	SF3B4	100	98.688	ENSRBIG00000043392	SF3B4	100	96.462	Rhinopithecus_bieti
ENSSHAG00000004043	SF3B4	100	98.688	ENSRROG00000029366	SF3B4	100	96.462	Rhinopithecus_roxellana
ENSSHAG00000004043	SF3B4	93	68.814	ENSRROG00000028213	-	90	65.147	Rhinopithecus_roxellana
ENSSHAG00000004043	SF3B4	100	98.425	ENSSBOG00000012310	-	100	96.226	Saimiri_boliviensis_boliviensis
ENSSHAG00000004043	SF3B4	100	74.541	ENSSBOG00000025174	-	73	78.981	Saimiri_boliviensis_boliviensis
ENSSHAG00000004043	SF3B4	55	91.983	ENSSFOG00015008864	sf3b4	56	93.421	Scleropages_formosus
ENSSHAG00000004043	SF3B4	56	92.083	ENSSMAG00000006837	sf3b4	74	78.964	Scophthalmus_maximus
ENSSHAG00000004043	SF3B4	56	92.500	ENSSDUG00000012064	sf3b4	76	78.750	Seriola_dumerili
ENSSHAG00000004043	SF3B4	56	92.500	ENSSLDG00000014226	sf3b4	60	92.500	Seriola_lalandi_dorsalis
ENSSHAG00000004043	SF3B4	72	90.612	ENSSPUG00000001028	SF3B4	57	93.860	Sphenodon_punctatus
ENSSHAG00000004043	SF3B4	56	92.917	ENSSPAG00000019219	sf3b4	76	79.062	Stegastes_partitus
ENSSHAG00000004043	SF3B4	100	98.688	ENSSSCG00000006665	-	100	96.462	Sus_scrofa
ENSSHAG00000004043	SF3B4	85	61.602	ENSSSCG00000039440	-	79	62.654	Sus_scrofa
ENSSHAG00000004043	SF3B4	55	92.373	ENSTGUG00000004470	SF3B4	90	93.421	Taeniopygia_guttata
ENSSHAG00000004043	SF3B4	53	92.070	ENSTRUG00000004516	sf3b4	57	91.667	Takifugu_rubripes
ENSSHAG00000004043	SF3B4	54	91.964	ENSTNIG00000009156	sf3b4	58	92.544	Tetraodon_nigroviridis
ENSSHAG00000004043	SF3B4	100	98.950	ENSTTRG00000005217	SF3B4	100	96.698	Tursiops_truncatus
ENSSHAG00000004043	SF3B4	100	98.950	ENSUAMG00000022468	SF3B4	100	96.698	Ursus_americanus
ENSSHAG00000004043	SF3B4	100	97.900	ENSUMAG00000003802	SF3B4	100	95.755	Ursus_maritimus
ENSSHAG00000004043	SF3B4	100	98.950	ENSVPAG00000008152	SF3B4	100	97.573	Vicugna_pacos
ENSSHAG00000004043	SF3B4	98	90.933	ENSVVUG00000007732	-	91	89.034	Vulpes_vulpes
ENSSHAG00000004043	SF3B4	58	96.818	ENSVVUG00000022697	-	56	94.403	Vulpes_vulpes
ENSSHAG00000004043	SF3B4	54	92.411	ENSXCOG00000019895	sf3b4	58	92.982	Xiphophorus_couchianus
ENSSHAG00000004043	SF3B4	54	92.411	ENSXMAG00000003772	sf3b4	58	92.982	Xiphophorus_maculatus