EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000004696 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 47187 bases
Position: chrGL849695.1:116962-164148
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000005375	RRM_1	PF00076.22	2e-32	1	2
ENSSHAP00000005375	RRM_1	PF00076.22	2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000005428	PSPC1-201	1578	-	ENSSHAP00000005375	525 (aa)	-	G3VQC0

Gene Model

Click here to download ENSSHAG00000004696's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000004696's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000004696	PSPC1	73	51.282	ENSSHAG00000012312	-	80	58.741
ENSSHAG00000004696	PSPC1	90	55.649	ENSSHAG00000016107	-	80	62.169
ENSSHAG00000004696	PSPC1	91	56.289	ENSSHAG00000010195	NONO	81	62.308

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000004696	PSPC1	100	91.619	ENSG00000121390	PSPC1	100	96.371	Homo_sapiens
ENSSHAG00000004696	PSPC1	91	65.112	ENSAPOG00000015946	pspc1	84	66.594	Acanthochromis_polyacanthus
ENSSHAG00000004696	PSPC1	100	91.048	ENSAMEG00000017420	PSPC1	100	90.667	Ailuropoda_melanoleuca
ENSSHAG00000004696	PSPC1	91	59.920	ENSACIG00000018695	pspc1	92	56.262	Amphilophus_citrinellus
ENSSHAG00000004696	PSPC1	88	65.904	ENSAOCG00000005279	pspc1	84	67.769	Amphiprion_ocellaris
ENSSHAG00000004696	PSPC1	88	66.318	ENSAPEG00000015927	pspc1	84	67.769	Amphiprion_percula
ENSSHAG00000004696	PSPC1	88	60.465	ENSATEG00000004878	pspc1	81	58.444	Anabas_testudineus
ENSSHAG00000004696	PSPC1	77	85.961	ENSAPLG00000006246	PSPC1	100	85.961	Anas_platyrhynchos
ENSSHAG00000004696	PSPC1	88	55.769	ENSAPLG00000003643	SFPQ	80	57.143	Anas_platyrhynchos
ENSSHAG00000004696	PSPC1	88	50.951	ENSACAG00000013307	-	56	61.370	Anolis_carolinensis
ENSSHAG00000004696	PSPC1	99	79.127	ENSACAG00000002093	PSPC1	99	79.317	Anolis_carolinensis
ENSSHAG00000004696	PSPC1	100	91.048	ENSANAG00000000059	PSPC1	100	90.667	Aotus_nancymaae
ENSSHAG00000004696	PSPC1	99	57.249	ENSACLG00000027220	pspc1	87	59.101	Astatotilapia_calliptera
ENSSHAG00000004696	PSPC1	99	59.347	ENSAMXG00000036881	pspc1	83	65.487	Astyanax_mexicanus
ENSSHAG00000004696	PSPC1	100	89.163	ENSBTAG00000003934	PSPC1	100	88.213	Bos_taurus
ENSSHAG00000004696	PSPC1	100	91.429	ENSCJAG00000004554	PSPC1	100	91.238	Callithrix_jacchus
ENSSHAG00000004696	PSPC1	100	89.905	ENSCAFG00020002009	PSPC1	100	90.476	Canis_lupus_dingo
ENSSHAG00000004696	PSPC1	100	89.163	ENSCHIG00000016708	PSPC1	100	88.213	Capra_hircus
ENSSHAG00000004696	PSPC1	80	82.898	ENSTSYG00000032882	PSPC1	93	84.561	Carlito_syrichta
ENSSHAG00000004696	PSPC1	100	90.476	ENSCPOG00000000395	PSPC1	100	89.143	Cavia_porcellus
ENSSHAG00000004696	PSPC1	100	91.238	ENSCCAG00000033498	PSPC1	100	90.857	Cebus_capucinus
ENSSHAG00000004696	PSPC1	100	91.619	ENSCATG00000036434	PSPC1	100	91.619	Cercocebus_atys
ENSSHAG00000004696	PSPC1	88	81.505	ENSCLAG00000005241	PSPC1	99	81.505	Chinchilla_lanigera
ENSSHAG00000004696	PSPC1	100	85.714	ENSCHOG00000008913	PSPC1	100	85.524	Choloepus_hoffmanni
ENSSHAG00000004696	PSPC1	99	81.818	ENSCPBG00000020859	PSPC1	89	88.298	Chrysemys_picta_bellii
ENSSHAG00000004696	PSPC1	78	83.538	ENSCANG00000018948	PSPC1	87	89.394	Colobus_angolensis_palliatus
ENSSHAG00000004696	PSPC1	100	90.667	ENSCGRG00001018368	Pspc1	100	90.667	Cricetulus_griseus_chok1gshd
ENSSHAG00000004696	PSPC1	100	90.667	ENSCGRG00000011724	Pspc1	100	90.667	Cricetulus_griseus_crigri
ENSSHAG00000004696	PSPC1	87	61.290	ENSCVAG00000007679	-	83	61.556	Cyprinodon_variegatus
ENSSHAG00000004696	PSPC1	99	61.624	ENSDARG00000006621	pspc1	100	61.058	Danio_rerio
ENSSHAG00000004696	PSPC1	100	90.857	ENSDNOG00000011078	PSPC1	100	90.857	Dasypus_novemcinctus
ENSSHAG00000004696	PSPC1	100	88.571	ENSDORG00000016050	Pspc1	100	88.571	Dipodomys_ordii
ENSSHAG00000004696	PSPC1	59	44.745	ENSEBUG00000010133	pspc1	84	45.538	Eptatretus_burgeri
ENSSHAG00000004696	PSPC1	88	52.066	ENSEBUG00000003964	-	62	65.517	Eptatretus_burgeri
ENSSHAG00000004696	PSPC1	100	90.667	ENSEASG00005000119	PSPC1	100	89.905	Equus_asinus_asinus
ENSSHAG00000004696	PSPC1	100	90.667	ENSECAG00000017286	PSPC1	100	89.905	Equus_caballus
ENSSHAG00000004696	PSPC1	73	90.164	ENSEEUG00000011288	-	88	80.745	Erinaceus_europaeus
ENSSHAG00000004696	PSPC1	91	65.447	ENSELUG00000003746	pspc1	81	73.235	Esox_lucius
ENSSHAG00000004696	PSPC1	100	91.238	ENSFCAG00000027841	PSPC1	100	90.476	Felis_catus
ENSSHAG00000004696	PSPC1	99	81.714	ENSFALG00000008750	PSPC1	99	81.714	Ficedula_albicollis
ENSSHAG00000004696	PSPC1	100	88.762	ENSFDAG00000002617	PSPC1	100	88.762	Fukomys_damarensis
ENSSHAG00000004696	PSPC1	88	61.966	ENSGMOG00000015074	pspc1	91	58.824	Gadus_morhua
ENSSHAG00000004696	PSPC1	99	81.321	ENSGALG00000017142	PSPC1	89	87.872	Gallus_gallus
ENSSHAG00000004696	PSPC1	66	68.091	ENSGAFG00000006327	pspc1	72	68.091	Gambusia_affinis
ENSSHAG00000004696	PSPC1	88	60.730	ENSGACG00000014901	pspc1	92	66.366	Gasterosteus_aculeatus
ENSSHAG00000004696	PSPC1	88	54.915	ENSGAGG00000017325	-	56	61.957	Gopherus_agassizii
ENSSHAG00000004696	PSPC1	99	81.818	ENSGAGG00000019164	PSPC1	89	88.298	Gopherus_agassizii
ENSSHAG00000004696	PSPC1	100	91.429	ENSGGOG00000003414	PSPC1	100	91.429	Gorilla_gorilla
ENSSHAG00000004696	PSPC1	99	60.074	ENSHBUG00000001139	pspc1	87	64.744	Haplochromis_burtoni
ENSSHAG00000004696	PSPC1	100	90.476	ENSHGLG00000018811	PSPC1	100	89.143	Heterocephalus_glaber_female
ENSSHAG00000004696	PSPC1	62	91.049	ENSHGLG00100007962	PSPC1	98	86.550	Heterocephalus_glaber_male
ENSSHAG00000004696	PSPC1	73	60.804	ENSHCOG00000013251	pspc1	83	64.380	Hippocampus_comes
ENSSHAG00000004696	PSPC1	90	64.990	ENSIPUG00000013192	pspc1	90	67.769	Ictalurus_punctatus
ENSSHAG00000004696	PSPC1	100	91.238	ENSSTOG00000026833	PSPC1	100	91.238	Ictidomys_tridecemlineatus
ENSSHAG00000004696	PSPC1	100	90.286	ENSJJAG00000018334	Pspc1	100	90.667	Jaculus_jaculus
ENSSHAG00000004696	PSPC1	88	51.398	ENSKMAG00000013525	-	90	49.797	Kryptolebias_marmoratus
ENSSHAG00000004696	PSPC1	90	61.492	ENSLBEG00000004474	pspc1	83	59.956	Labrus_bergylta
ENSSHAG00000004696	PSPC1	99	70.849	ENSLACG00000010762	PSPC1	88	78.755	Latimeria_chalumnae
ENSSHAG00000004696	PSPC1	88	78.402	ENSLOCG00000010832	pspc1	91	78.402	Lepisosteus_oculatus
ENSSHAG00000004696	PSPC1	100	90.667	ENSLAFG00000010968	PSPC1	100	90.667	Loxodonta_africana
ENSSHAG00000004696	PSPC1	100	91.429	ENSMFAG00000032728	PSPC1	100	91.429	Macaca_fascicularis
ENSSHAG00000004696	PSPC1	100	91.429	ENSMMUG00000020262	PSPC1	100	91.429	Macaca_mulatta
ENSSHAG00000004696	PSPC1	100	91.429	ENSMNEG00000027401	PSPC1	100	91.429	Macaca_nemestrina
ENSSHAG00000004696	PSPC1	100	91.022	ENSMLEG00000039043	PSPC1	99	95.833	Mandrillus_leucophaeus
ENSSHAG00000004696	PSPC1	90	64.990	ENSMAMG00000004333	pspc1	92	62.551	Mastacembelus_armatus
ENSSHAG00000004696	PSPC1	99	57.249	ENSMZEG00005005726	pspc1	87	59.101	Maylandia_zebra
ENSSHAG00000004696	PSPC1	78	85.784	ENSMGAG00000015134	PSPC1	100	85.784	Meleagris_gallopavo
ENSSHAG00000004696	PSPC1	88	89.871	ENSMAUG00000021067	Pspc1	99	87.312	Mesocricetus_auratus
ENSSHAG00000004696	PSPC1	100	91.238	ENSMICG00000013970	PSPC1	100	91.238	Microcebus_murinus
ENSSHAG00000004696	PSPC1	100	90.667	ENSMOCG00000006060	Pspc1	100	90.667	Microtus_ochrogaster
ENSSHAG00000004696	PSPC1	91	43.545	ENSMMOG00000004352	pspc1	62	54.598	Mola_mola
ENSSHAG00000004696	PSPC1	93	94.251	ENSMODG00000008029	PSPC1	78	94.251	Monodelphis_domestica
ENSSHAG00000004696	PSPC1	88	64.957	ENSMALG00000008914	pspc1	92	61.134	Monopterus_albus
ENSSHAG00000004696	PSPC1	100	90.684	MGP_CAROLIEiJ_G0019341	Pspc1	100	90.684	Mus_caroli
ENSSHAG00000004696	PSPC1	100	90.875	ENSMUSG00000021938	Pspc1	100	90.875	Mus_musculus
ENSSHAG00000004696	PSPC1	100	90.684	MGP_PahariEiJ_G0030359	Pspc1	100	90.684	Mus_pahari
ENSSHAG00000004696	PSPC1	100	90.684	MGP_SPRETEiJ_G0020232	Pspc1	100	90.684	Mus_spretus
ENSSHAG00000004696	PSPC1	100	90.857	ENSMPUG00000013347	PSPC1	100	90.095	Mustela_putorius_furo
ENSSHAG00000004696	PSPC1	100	89.394	ENSMLUG00000017663	PSPC1	100	88.636	Myotis_lucifugus
ENSSHAG00000004696	PSPC1	100	90.667	ENSNGAG00000011271	Pspc1	100	90.667	Nannospalax_galili
ENSSHAG00000004696	PSPC1	74	63.409	ENSNBRG00000014059	pspc1	76	69.512	Neolamprologus_brichardi
ENSSHAG00000004696	PSPC1	100	91.619	ENSNLEG00000001294	PSPC1	100	91.619	Nomascus_leucogenys
ENSSHAG00000004696	PSPC1	78	99.219	ENSMEUG00000000476	PSPC1	79	99.219	Notamacropus_eugenii
ENSSHAG00000004696	PSPC1	100	84.190	ENSODEG00000007817	-	100	82.576	Octodon_degus
ENSSHAG00000004696	PSPC1	100	80.418	ENSODEG00000019012	-	100	78.868	Octodon_degus
ENSSHAG00000004696	PSPC1	99	59.781	ENSONIG00000012010	pspc1	87	63.924	Oreochromis_niloticus
ENSSHAG00000004696	PSPC1	99	63.308	ENSOANG00000011381	-	99	60.646	Ornithorhynchus_anatinus
ENSSHAG00000004696	PSPC1	76	90.773	ENSOANG00000009017	-	100	90.773	Ornithorhynchus_anatinus
ENSSHAG00000004696	PSPC1	100	91.619	ENSOCUG00000006153	PSPC1	100	91.619	Oryctolagus_cuniculus
ENSSHAG00000004696	PSPC1	88	65.254	ENSORLG00000004232	-	86	61.255	Oryzias_latipes
ENSSHAG00000004696	PSPC1	90	62.834	ENSORLG00020000578	PSPC1	85	61.874	Oryzias_latipes_hni
ENSSHAG00000004696	PSPC1	88	65.678	ENSORLG00015017480	pspc1	85	62.092	Oryzias_latipes_hsok
ENSSHAG00000004696	PSPC1	100	92.000	ENSOGAG00000012643	PSPC1	100	92.000	Otolemur_garnettii
ENSSHAG00000004696	PSPC1	100	84.571	ENSOARG00000014163	PSPC1	100	84.688	Ovis_aries
ENSSHAG00000004696	PSPC1	89	90.812	ENSPPAG00000009836	PSPC1	98	90.812	Pan_paniscus
ENSSHAG00000004696	PSPC1	100	91.238	ENSPPRG00000008833	PSPC1	100	90.476	Panthera_pardus
ENSSHAG00000004696	PSPC1	100	76.762	ENSPTIG00000016917	PSPC1	100	76.381	Panthera_tigris_altaica
ENSSHAG00000004696	PSPC1	98	90.116	ENSPTRG00000005677	PSPC1	99	91.189	Pan_troglodytes
ENSSHAG00000004696	PSPC1	100	91.619	ENSPANG00000001992	PSPC1	100	91.619	Papio_anubis
ENSSHAG00000004696	PSPC1	82	72.158	ENSPKIG00000003578	pspc1	81	71.560	Paramormyrops_kingsleyae
ENSSHAG00000004696	PSPC1	99	81.051	ENSPSIG00000005168	PSPC1	89	87.660	Pelodiscus_sinensis
ENSSHAG00000004696	PSPC1	54	67.361	ENSPMGG00000015135	pspc1	84	65.017	Periophthalmus_magnuspinnatus
ENSSHAG00000004696	PSPC1	100	91.048	ENSPEMG00000015214	Pspc1	100	91.048	Peromyscus_maniculatus_bairdii
ENSSHAG00000004696	PSPC1	99	94.847	ENSPCIG00000017680	PSPC1	100	94.847	Phascolarctos_cinereus
ENSSHAG00000004696	PSPC1	95	61.628	ENSPFOG00000003362	pspc1	93	61.876	Poecilia_formosa
ENSSHAG00000004696	PSPC1	95	61.628	ENSPLAG00000011540	pspc1	92	61.876	Poecilia_latipinna
ENSSHAG00000004696	PSPC1	70	59.409	ENSPLAG00000004407	-	53	60.218	Poecilia_latipinna
ENSSHAG00000004696	PSPC1	69	60.383	ENSPMEG00000001025	-	52	60.383	Poecilia_mexicana
ENSSHAG00000004696	PSPC1	95	61.240	ENSPMEG00000008322	pspc1	92	61.477	Poecilia_mexicana
ENSSHAG00000004696	PSPC1	95	61.240	ENSPREG00000007786	pspc1	92	61.477	Poecilia_reticulata
ENSSHAG00000004696	PSPC1	100	91.238	ENSPPYG00000005186	PSPC1	100	91.429	Pongo_abelii
ENSSHAG00000004696	PSPC1	67	90.164	ENSPCAG00000008314	-	66	90.164	Procavia_capensis
ENSSHAG00000004696	PSPC1	100	87.429	ENSPCOG00000014364	PSPC1	100	87.429	Propithecus_coquereli
ENSSHAG00000004696	PSPC1	100	86.857	ENSPVAG00000005036	PSPC1	100	87.238	Pteropus_vampyrus
ENSSHAG00000004696	PSPC1	99	57.011	ENSPNYG00000008893	pspc1	87	59.101	Pundamilia_nyererei
ENSSHAG00000004696	PSPC1	99	62.709	ENSPNAG00000016511	pspc1	92	66.122	Pygocentrus_nattereri
ENSSHAG00000004696	PSPC1	100	90.857	ENSRNOG00000020782	Pspc1	100	90.857	Rattus_norvegicus
ENSSHAG00000004696	PSPC1	93	91.616	ENSRBIG00000036057	PSPC1	98	91.667	Rhinopithecus_bieti
ENSSHAG00000004696	PSPC1	100	91.810	ENSRROG00000036334	PSPC1	100	91.810	Rhinopithecus_roxellana
ENSSHAG00000004696	PSPC1	79	86.024	ENSSBOG00000028172	PSPC1	88	87.778	Saimiri_boliviensis_boliviensis
ENSSHAG00000004696	PSPC1	82	72.960	ENSSFOG00015001395	pspc1	90	72.454	Scleropages_formosus
ENSSHAG00000004696	PSPC1	95	59.393	ENSSMAG00000001761	pspc1	85	67.714	Scophthalmus_maximus
ENSSHAG00000004696	PSPC1	88	64.646	ENSSDUG00000010651	pspc1	88	63.232	Seriola_dumerili
ENSSHAG00000004696	PSPC1	88	64.009	ENSSLDG00000004284	pspc1	87	63.020	Seriola_lalandi_dorsalis
ENSSHAG00000004696	PSPC1	100	86.857	ENSSARG00000000888	PSPC1	100	87.429	Sorex_araneus
ENSSHAG00000004696	PSPC1	89	48.945	ENSSPUG00000001136	-	53	55.153	Sphenodon_punctatus
ENSSHAG00000004696	PSPC1	99	73.774	ENSSPUG00000008550	PSPC1	89	80.255	Sphenodon_punctatus
ENSSHAG00000004696	PSPC1	88	64.887	ENSSPAG00000001921	pspc1	82	66.157	Stegastes_partitus
ENSSHAG00000004696	PSPC1	100	88.952	ENSSSCG00000009569	PSPC1	100	89.143	Sus_scrofa
ENSSHAG00000004696	PSPC1	89	88.060	ENSTGUG00000011295	PSPC1	100	88.060	Taeniopygia_guttata
ENSSHAG00000004696	PSPC1	88	56.701	ENSTRUG00000011335	pspc1	77	60.671	Takifugu_rubripes
ENSSHAG00000004696	PSPC1	88	60.381	ENSTNIG00000010358	pspc1	90	59.508	Tetraodon_nigroviridis
ENSSHAG00000004696	PSPC1	100	70.857	ENSTBEG00000002361	PSPC1	100	69.714	Tupaia_belangeri
ENSSHAG00000004696	PSPC1	100	89.905	ENSTTRG00000003343	PSPC1	100	88.762	Tursiops_truncatus
ENSSHAG00000004696	PSPC1	62	95.679	ENSUAMG00000012309	PSPC1	97	91.228	Ursus_americanus
ENSSHAG00000004696	PSPC1	93	91.411	ENSUMAG00000013993	PSPC1	98	91.458	Ursus_maritimus
ENSSHAG00000004696	PSPC1	76	90.773	ENSVPAG00000010029	PSPC1	100	90.773	Vicugna_pacos
ENSSHAG00000004696	PSPC1	100	89.905	ENSVVUG00000006414	PSPC1	100	90.476	Vulpes_vulpes
ENSSHAG00000004696	PSPC1	69	65.499	ENSXCOG00000017438	pspc1	83	67.797	Xiphophorus_couchianus
ENSSHAG00000004696	PSPC1	69	65.768	ENSXMAG00000007929	pspc1	83	68.079	Xiphophorus_maculatus