EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000005096 (Gene tree)
Gene ID: 100927966
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 87351 bases
Position: chrGL834438.1:138419-225769
Accession: 100927966
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000005841	DND1_DSRM	PF14709.7	5.8e-25	1	1
ENSSHAP00000005842	DND1_DSRM	PF14709.7	5.9e-25	1	1
ENSSHAP00000005841	RRM_1	PF00076.22	1.8e-39	1	3
ENSSHAP00000005841	RRM_1	PF00076.22	1.8e-39	2	3
ENSSHAP00000005841	RRM_1	PF00076.22	1.8e-39	3	3
ENSSHAP00000005842	RRM_1	PF00076.22	1.9e-39	1	3
ENSSHAP00000005842	RRM_1	PF00076.22	1.9e-39	2	3
ENSSHAP00000005842	RRM_1	PF00076.22	1.9e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000005895	A1CF-201	1845	-	ENSSHAP00000005841	585 (aa)	XP_012408010	G3VRN6
ENSSHAT00000005896	A1CF-202	1894	-	ENSSHAP00000005842	593 (aa)	XP_012407973	G3VRN7

Gene Model

Click here to download ENSSHAG00000005096's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000005096's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000005096	A1CF	86	54.167	ENSSHAG00000012596	RBM46	85	54.167
ENSSHAG00000005096	A1CF	75	59.508	ENSSHAG00000017576	RBM47	73	58.000
ENSSHAG00000005096	A1CF	50	54.608	ENSSHAG00000010091	HNRNPR	66	46.429
ENSSHAG00000005096	A1CF	52	52.273	ENSSHAG00000015863	SYNCRIP	63	44.691

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000005096	A1CF	100	90.084	ENSG00000148584	A1CF	100	97.015	Homo_sapiens
ENSSHAG00000005096	A1CF	100	74.030	ENSAPOG00000008259	a1cf	100	74.030	Acanthochromis_polyacanthus
ENSSHAG00000005096	A1CF	100	88.870	ENSAMEG00000000523	A1CF	100	88.870	Ailuropoda_melanoleuca
ENSSHAG00000005096	A1CF	100	76.198	ENSACIG00000008632	a1cf	100	77.521	Amphilophus_citrinellus
ENSSHAG00000005096	A1CF	100	74.542	ENSAOCG00000023744	a1cf	96	82.899	Amphiprion_ocellaris
ENSSHAG00000005096	A1CF	100	74.548	ENSAPEG00000009537	a1cf	100	75.534	Amphiprion_percula
ENSSHAG00000005096	A1CF	100	76.073	ENSATEG00000013720	a1cf	100	77.393	Anabas_testudineus
ENSSHAG00000005096	A1CF	100	90.219	ENSAPLG00000002964	A1CF	100	90.219	Anas_platyrhynchos
ENSSHAG00000005096	A1CF	100	85.983	ENSACAG00000015269	A1CF	100	85.983	Anolis_carolinensis
ENSSHAG00000005096	A1CF	100	90.119	ENSANAG00000019974	A1CF	100	90.119	Aotus_nancymaae
ENSSHAG00000005096	A1CF	100	73.710	ENSACLG00000017428	a1cf	100	75.874	Astatotilapia_calliptera
ENSSHAG00000005096	A1CF	100	75.207	ENSAMXG00000018180	a1cf	100	75.207	Astyanax_mexicanus
ENSSHAG00000005096	A1CF	100	89.966	ENSBTAG00000021195	A1CF	100	89.966	Bos_taurus
ENSSHAG00000005096	A1CF	100	89.916	ENSCJAG00000005045	A1CF	100	89.916	Callithrix_jacchus
ENSSHAG00000005096	A1CF	100	89.376	ENSCAFG00000015581	A1CF	100	89.545	Canis_familiaris
ENSSHAG00000005096	A1CF	100	89.376	ENSCAFG00020026421	A1CF	100	89.545	Canis_lupus_dingo
ENSSHAG00000005096	A1CF	100	89.262	ENSCHIG00000020411	A1CF	100	89.262	Capra_hircus
ENSSHAG00000005096	A1CF	95	89.146	ENSTSYG00000001755	A1CF	100	89.312	Carlito_syrichta
ENSSHAG00000005096	A1CF	100	80.864	ENSCAPG00000017386	A1CF	100	80.864	Cavia_aperea
ENSSHAG00000005096	A1CF	100	89.412	ENSCPOG00000009807	A1CF	100	89.412	Cavia_porcellus
ENSSHAG00000005096	A1CF	100	90.067	ENSCCAG00000018168	A1CF	100	90.067	Cebus_capucinus
ENSSHAG00000005096	A1CF	100	89.744	ENSCATG00000043715	A1CF	100	89.744	Cercocebus_atys
ENSSHAG00000005096	A1CF	100	89.112	ENSCLAG00000010424	A1CF	100	89.112	Chinchilla_lanigera
ENSSHAG00000005096	A1CF	100	90.219	ENSCSAG00000007032	A1CF	100	90.219	Chlorocebus_sabaeus
ENSSHAG00000005096	A1CF	98	84.391	ENSCHOG00000009089	A1CF	98	84.391	Choloepus_hoffmanni
ENSSHAG00000005096	A1CF	100	89.376	ENSCPBG00000026464	A1CF	100	89.376	Chrysemys_picta_bellii
ENSSHAG00000005096	A1CF	100	90.219	ENSCANG00000038032	A1CF	100	90.219	Colobus_angolensis_palliatus
ENSSHAG00000005096	A1CF	100	87.919	ENSCGRG00001017413	A1cf	100	87.919	Cricetulus_griseus_chok1gshd
ENSSHAG00000005096	A1CF	100	87.248	ENSCGRG00000017332	A1cf	100	87.752	Cricetulus_griseus_crigri
ENSSHAG00000005096	A1CF	100	74.959	ENSCSEG00000002361	a1cf	100	76.285	Cynoglossus_semilaevis
ENSSHAG00000005096	A1CF	100	74.422	ENSCVAG00000010520	a1cf	100	76.733	Cyprinodon_variegatus
ENSSHAG00000005096	A1CF	100	79.322	ENSDARG00000002968	a1cf	100	80.508	Danio_rerio
ENSSHAG00000005096	A1CF	100	88.423	ENSDNOG00000002829	A1CF	100	88.591	Dasypus_novemcinctus
ENSSHAG00000005096	A1CF	82	90.942	ENSETEG00000012527	A1CF	81	90.942	Echinops_telfairi
ENSSHAG00000005096	A1CF	100	90.134	ENSEASG00005012924	A1CF	100	90.134	Equus_asinus_asinus
ENSSHAG00000005096	A1CF	100	89.967	ENSECAG00000010424	A1CF	100	89.967	Equus_caballus
ENSSHAG00000005096	A1CF	78	77.560	ENSEEUG00000000013	A1CF	97	78.475	Erinaceus_europaeus
ENSSHAG00000005096	A1CF	100	78.428	ENSELUG00000003159	a1cf	100	79.431	Esox_lucius
ENSSHAG00000005096	A1CF	100	88.718	ENSFCAG00000011179	A1CF	100	88.718	Felis_catus
ENSSHAG00000005096	A1CF	100	88.718	ENSFALG00000013183	A1CF	100	88.718	Ficedula_albicollis
ENSSHAG00000005096	A1CF	100	88.095	ENSFDAG00000019371	A1CF	100	88.095	Fukomys_damarensis
ENSSHAG00000005096	A1CF	100	69.802	ENSFHEG00000019652	a1cf	96	84.375	Fundulus_heteroclitus
ENSSHAG00000005096	A1CF	100	70.744	ENSGMOG00000018943	a1cf	100	70.579	Gadus_morhua
ENSSHAG00000005096	A1CF	95	89.502	ENSGALG00000003765	A1CF	97	89.502	Gallus_gallus
ENSSHAG00000005096	A1CF	100	71.167	ENSGAFG00000014868	a1cf	100	71.167	Gambusia_affinis
ENSSHAG00000005096	A1CF	100	73.849	ENSGACG00000010241	a1cf	100	74.178	Gasterosteus_aculeatus
ENSSHAG00000005096	A1CF	94	89.286	ENSGAGG00000016508	A1CF	97	89.286	Gopherus_agassizii
ENSSHAG00000005096	A1CF	100	89.916	ENSGGOG00000009670	A1CF	100	89.916	Gorilla_gorilla
ENSSHAG00000005096	A1CF	100	75.702	ENSHBUG00000021959	a1cf	100	77.686	Haplochromis_burtoni
ENSSHAG00000005096	A1CF	100	89.094	ENSHGLG00000008955	A1CF	100	88.926	Heterocephalus_glaber_female
ENSSHAG00000005096	A1CF	100	88.423	ENSHGLG00100000518	A1CF	100	88.255	Heterocephalus_glaber_male
ENSSHAG00000005096	A1CF	95	72.241	ENSHCOG00000017669	a1cf	100	73.409	Hippocampus_comes
ENSSHAG00000005096	A1CF	90	82.276	ENSIPUG00000010367	a1cf	96	82.276	Ictalurus_punctatus
ENSSHAG00000005096	A1CF	100	77.073	ENSKMAG00000006568	a1cf	100	76.911	Kryptolebias_marmoratus
ENSSHAG00000005096	A1CF	99	74.795	ENSLBEG00000020994	a1cf	98	76.277	Labrus_bergylta
ENSSHAG00000005096	A1CF	100	82.653	ENSLACG00000008061	A1CF	100	82.653	Latimeria_chalumnae
ENSSHAG00000005096	A1CF	100	82.915	ENSLOCG00000006302	a1cf	100	83.082	Lepisosteus_oculatus
ENSSHAG00000005096	A1CF	100	89.262	ENSLAFG00000015462	A1CF	100	89.430	Loxodonta_africana
ENSSHAG00000005096	A1CF	100	90.085	ENSMFAG00000035948	A1CF	100	90.085	Macaca_fascicularis
ENSSHAG00000005096	A1CF	100	90.085	ENSMMUG00000007077	A1CF	100	90.085	Macaca_mulatta
ENSSHAG00000005096	A1CF	100	89.744	ENSMNEG00000031454	A1CF	100	89.744	Macaca_nemestrina
ENSSHAG00000005096	A1CF	100	89.882	ENSMLEG00000037223	A1CF	100	89.882	Mandrillus_leucophaeus
ENSSHAG00000005096	A1CF	100	74.461	ENSMAMG00000010402	a1cf	100	76.285	Mastacembelus_armatus
ENSSHAG00000005096	A1CF	100	76.589	ENSMZEG00005013245	a1cf	100	77.592	Maylandia_zebra
ENSSHAG00000005096	A1CF	100	89.226	ENSMGAG00000001507	A1CF	100	89.226	Meleagris_gallopavo
ENSSHAG00000005096	A1CF	100	87.248	ENSMAUG00000007422	A1cf	100	87.416	Mesocricetus_auratus
ENSSHAG00000005096	A1CF	100	88.494	ENSMICG00000003377	A1CF	100	88.663	Microcebus_murinus
ENSSHAG00000005096	A1CF	100	87.752	ENSMOCG00000021536	A1cf	100	88.087	Microtus_ochrogaster
ENSSHAG00000005096	A1CF	100	67.720	ENSMMOG00000009422	a1cf	100	69.717	Mola_mola
ENSSHAG00000005096	A1CF	92	95.345	ENSMODG00000016478	A1CF	99	95.345	Monodelphis_domestica
ENSSHAG00000005096	A1CF	100	73.220	ENSMALG00000012992	a1cf	100	73.220	Monopterus_albus
ENSSHAG00000005096	A1CF	100	86.745	MGP_CAROLIEiJ_G0022873	A1cf	100	86.913	Mus_caroli
ENSSHAG00000005096	A1CF	100	86.745	ENSMUSG00000052595	A1cf	99	91.339	Mus_musculus
ENSSHAG00000005096	A1CF	100	86.577	MGP_PahariEiJ_G0014366	A1cf	100	86.577	Mus_pahari
ENSSHAG00000005096	A1CF	100	86.409	MGP_SPRETEiJ_G0023792	A1cf	100	86.577	Mus_spretus
ENSSHAG00000005096	A1CF	100	83.474	ENSMPUG00000016971	A1CF	100	83.474	Mustela_putorius_furo
ENSSHAG00000005096	A1CF	100	88.255	ENSMLUG00000016071	A1CF	100	88.255	Myotis_lucifugus
ENSSHAG00000005096	A1CF	100	87.752	ENSNGAG00000015136	A1cf	100	87.919	Nannospalax_galili
ENSSHAG00000005096	A1CF	100	76.033	ENSNBRG00000001712	a1cf	100	78.017	Neolamprologus_brichardi
ENSSHAG00000005096	A1CF	100	89.933	ENSNLEG00000012028	A1CF	100	90.101	Nomascus_leucogenys
ENSSHAG00000005096	A1CF	94	95.471	ENSMEUG00000015909	A1CF	100	95.471	Notamacropus_eugenii
ENSSHAG00000005096	A1CF	89	80.798	ENSOPRG00000010667	A1CF	97	80.529	Ochotona_princeps
ENSSHAG00000005096	A1CF	100	76.860	ENSONIG00000019105	a1cf	100	78.017	Oreochromis_niloticus
ENSSHAG00000005096	A1CF	78	89.542	ENSOANG00000007360	A1CF	99	89.542	Ornithorhynchus_anatinus
ENSSHAG00000005096	A1CF	100	88.455	ENSOCUG00000011587	A1CF	100	88.455	Oryctolagus_cuniculus
ENSSHAG00000005096	A1CF	100	75.082	ENSORLG00000013342	a1cf	100	74.754	Oryzias_latipes
ENSSHAG00000005096	A1CF	100	76.105	ENSORLG00020000586	a1cf	100	76.432	Oryzias_latipes_hni
ENSSHAG00000005096	A1CF	100	76.268	ENSORLG00015018569	a1cf	100	76.596	Oryzias_latipes_hsok
ENSSHAG00000005096	A1CF	100	76.119	ENSOMEG00000013531	a1cf	100	76.119	Oryzias_melastigma
ENSSHAG00000005096	A1CF	100	90.051	ENSOGAG00000012884	A1CF	100	90.051	Otolemur_garnettii
ENSSHAG00000005096	A1CF	100	89.765	ENSOARG00000013695	A1CF	100	89.765	Ovis_aries
ENSSHAG00000005096	A1CF	97	88.215	ENSPPAG00000028115	A1CF	100	92.323	Pan_paniscus
ENSSHAG00000005096	A1CF	100	89.207	ENSPPRG00000012180	A1CF	100	89.207	Panthera_pardus
ENSSHAG00000005096	A1CF	100	89.207	ENSPTIG00000021223	A1CF	100	89.207	Panthera_tigris_altaica
ENSSHAG00000005096	A1CF	100	90.084	ENSPTRG00000002508	A1CF	100	90.084	Pan_troglodytes
ENSSHAG00000005096	A1CF	100	90.085	ENSPANG00000021988	A1CF	100	90.085	Papio_anubis
ENSSHAG00000005096	A1CF	100	80.435	ENSPKIG00000025176	a1cf	100	80.435	Paramormyrops_kingsleyae
ENSSHAG00000005096	A1CF	100	89.402	ENSPSIG00000010318	A1CF	100	89.402	Pelodiscus_sinensis
ENSSHAG00000005096	A1CF	98	67.298	ENSPMGG00000013359	a1cf	99	68.675	Periophthalmus_magnuspinnatus
ENSSHAG00000005096	A1CF	100	88.591	ENSPEMG00000015021	A1cf	100	88.423	Peromyscus_maniculatus_bairdii
ENSSHAG00000005096	A1CF	100	95.043	ENSPCIG00000002175	A1CF	100	95.043	Phascolarctos_cinereus
ENSSHAG00000005096	A1CF	100	74.919	ENSPFOG00000007437	-	100	77.199	Poecilia_formosa
ENSSHAG00000005096	A1CF	100	75.081	ENSPFOG00000006683	a1cf	100	77.362	Poecilia_formosa
ENSSHAG00000005096	A1CF	100	74.752	ENSPLAG00000001210	-	100	77.063	Poecilia_latipinna
ENSSHAG00000005096	A1CF	100	74.752	ENSPLAG00000000026	a1cf	100	77.063	Poecilia_latipinna
ENSSHAG00000005096	A1CF	100	67.647	ENSPMEG00000015529	-	100	69.935	Poecilia_mexicana
ENSSHAG00000005096	A1CF	100	67.384	ENSPMEG00000000921	a1cf	100	69.702	Poecilia_mexicana
ENSSHAG00000005096	A1CF	100	74.756	ENSPREG00000016298	a1cf	100	77.036	Poecilia_reticulata
ENSSHAG00000005096	A1CF	100	89.966	ENSPPYG00000002819	A1CF	100	90.136	Pongo_abelii
ENSSHAG00000005096	A1CF	79	69.032	ENSPCAG00000006463	A1CF	62	78.082	Procavia_capensis
ENSSHAG00000005096	A1CF	100	89.782	ENSPCOG00000024172	A1CF	100	89.782	Propithecus_coquereli
ENSSHAG00000005096	A1CF	100	76.020	ENSPNYG00000017944	a1cf	100	77.977	Pundamilia_nyererei
ENSSHAG00000005096	A1CF	100	80.872	ENSPNAG00000007704	a1cf	100	80.872	Pygocentrus_nattereri
ENSSHAG00000005096	A1CF	100	86.565	ENSRNOG00000033195	A1cf	100	86.735	Rattus_norvegicus
ENSSHAG00000005096	A1CF	100	83.866	ENSRBIG00000042892	A1CF	100	87.824	Rhinopithecus_bieti
ENSSHAG00000005096	A1CF	100	90.219	ENSRROG00000041398	A1CF	100	90.219	Rhinopithecus_roxellana
ENSSHAG00000005096	A1CF	100	89.933	ENSSBOG00000021930	A1CF	100	89.765	Saimiri_boliviensis_boliviensis
ENSSHAG00000005096	A1CF	100	80.000	ENSSFOG00015011774	a1cf	100	80.336	Scleropages_formosus
ENSSHAG00000005096	A1CF	100	75.244	ENSSMAG00000013271	a1cf	100	75.570	Scophthalmus_maximus
ENSSHAG00000005096	A1CF	100	75.828	ENSSDUG00000013930	a1cf	100	76.821	Seriola_dumerili
ENSSHAG00000005096	A1CF	100	70.100	ENSSLDG00000004290	a1cf	100	71.044	Seriola_lalandi_dorsalis
ENSSHAG00000005096	A1CF	95	78.891	ENSSARG00000005940	A1CF	96	79.428	Sorex_araneus
ENSSHAG00000005096	A1CF	95	86.219	ENSSPUG00000006797	A1CF	95	86.195	Sphenodon_punctatus
ENSSHAG00000005096	A1CF	100	89.933	ENSSSCG00000010431	A1CF	100	89.933	Sus_scrofa
ENSSHAG00000005096	A1CF	100	88.294	ENSTGUG00000005090	A1CF	100	88.294	Taeniopygia_guttata
ENSSHAG00000005096	A1CF	100	73.736	ENSTRUG00000001982	a1cf	100	73.736	Takifugu_rubripes
ENSSHAG00000005096	A1CF	100	74.472	ENSTNIG00000003580	a1cf	100	74.472	Tetraodon_nigroviridis
ENSSHAG00000005096	A1CF	97	82.807	ENSTTRG00000013190	A1CF	95	82.807	Tursiops_truncatus
ENSSHAG00000005096	A1CF	100	88.718	ENSUAMG00000020065	A1CF	100	88.718	Ursus_americanus
ENSSHAG00000005096	A1CF	100	88.364	ENSUMAG00000011162	A1CF	100	88.364	Ursus_maritimus
ENSSHAG00000005096	A1CF	87	84.825	ENSVPAG00000006130	A1CF	86	84.825	Vicugna_pacos
ENSSHAG00000005096	A1CF	100	89.402	ENSVVUG00000002504	A1CF	99	90.672	Vulpes_vulpes
ENSSHAG00000005096	A1CF	100	78.392	ENSXETG00000006611	a1cf	100	78.392	Xenopus_tropicalis
ENSSHAG00000005096	A1CF	100	76.578	ENSXCOG00000003302	a1cf	100	77.575	Xiphophorus_couchianus
ENSSHAG00000005096	A1CF	100	76.721	ENSXMAG00000016703	a1cf	100	77.705	Xiphophorus_maculatus