EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000005140 (Gene tree)
Gene ID: 100928620
Gene Symbol: URB1
Alias: C21orf108|KIAA0539|NPA1
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 98427 bases
Position: chrGL849540.1:140832-239258
Accession: 17344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000005893	Npa1	PF11707.8	2.5e-83	1	1
ENSSHAP00000005894	Npa1	PF11707.8	4.2e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000005948	URB1-202	7761	-	ENSSHAP00000005894	2269 (aa)	-	G3VRT9
ENSSHAT00000005947	URB1-201	7770	-	ENSSHAP00000005893	2276 (aa)	-	G3VRT8

Gene Model

Click here to download ENSSHAG00000005140's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000005140's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000005140	URB1	99	63.979	ENSG00000142207	URB1	99	63.860	Homo_sapiens
ENSSHAG00000005140	URB1	100	43.206	ENSAPOG00000020308	urb1	99	43.230	Acanthochromis_polyacanthus
ENSSHAG00000005140	URB1	100	63.075	ENSAMEG00000011998	URB1	99	63.075	Ailuropoda_melanoleuca
ENSSHAG00000005140	URB1	96	43.252	ENSACIG00000003248	urb1	98	43.342	Amphilophus_citrinellus
ENSSHAG00000005140	URB1	100	40.923	ENSAOCG00000010364	urb1	99	41.018	Amphiprion_ocellaris
ENSSHAG00000005140	URB1	97	53.151	ENSAPEG00000010758	urb1	99	53.151	Amphiprion_percula
ENSSHAG00000005140	URB1	99	43.644	ENSATEG00000011790	urb1	99	43.601	Anabas_testudineus
ENSSHAG00000005140	URB1	97	58.847	ENSAPLG00000012791	URB1	99	59.072	Anas_platyrhynchos
ENSSHAG00000005140	URB1	99	54.625	ENSACAG00000002817	URB1	99	55.062	Anolis_carolinensis
ENSSHAG00000005140	URB1	100	63.732	ENSANAG00000024617	URB1	99	63.867	Aotus_nancymaae
ENSSHAG00000005140	URB1	99	44.943	ENSACLG00000024865	urb1	99	44.672	Astatotilapia_calliptera
ENSSHAG00000005140	URB1	99	39.725	ENSAMXG00000012306	urb1	99	39.485	Astyanax_mexicanus
ENSSHAG00000005140	URB1	100	61.861	ENSBTAG00000012412	URB1	99	61.861	Bos_taurus
ENSSHAG00000005140	URB1	100	63.316	ENSCJAG00000009118	URB1	99	63.446	Callithrix_jacchus
ENSSHAG00000005140	URB1	100	64.479	ENSCAFG00000008892	URB1	99	64.479	Canis_familiaris
ENSSHAG00000005140	URB1	100	63.278	ENSCAFG00020025994	-	99	63.278	Canis_lupus_dingo
ENSSHAG00000005140	URB1	100	64.082	ENSCAFG00020025987	-	99	64.082	Canis_lupus_dingo
ENSSHAG00000005140	URB1	100	60.794	ENSCHIG00000015645	URB1	99	60.794	Capra_hircus
ENSSHAG00000005140	URB1	100	63.863	ENSTSYG00000013286	URB1	99	63.927	Carlito_syrichta
ENSSHAG00000005140	URB1	99	59.982	ENSCAPG00000015589	URB1	99	59.982	Cavia_aperea
ENSSHAG00000005140	URB1	100	61.026	ENSCPOG00000006748	URB1	99	61.050	Cavia_porcellus
ENSSHAG00000005140	URB1	100	63.848	ENSCCAG00000021299	URB1	99	63.848	Cebus_capucinus
ENSSHAG00000005140	URB1	100	64.089	ENSCATG00000042630	URB1	99	64.264	Cercocebus_atys
ENSSHAG00000005140	URB1	100	61.828	ENSCLAG00000005262	URB1	99	61.828	Chinchilla_lanigera
ENSSHAG00000005140	URB1	100	63.343	ENSCSAG00000009584	URB1	99	63.518	Chlorocebus_sabaeus
ENSSHAG00000005140	URB1	100	61.257	ENSCPBG00000006454	URB1	99	61.431	Chrysemys_picta_bellii
ENSSHAG00000005140	URB1	100	64.248	ENSCANG00000031088	URB1	99	64.423	Colobus_angolensis_palliatus
ENSSHAG00000005140	URB1	99	61.170	ENSCGRG00001010616	Urb1	99	60.989	Cricetulus_griseus_chok1gshd
ENSSHAG00000005140	URB1	98	61.056	ENSCGRG00000015840	Urb1	99	61.056	Cricetulus_griseus_crigri
ENSSHAG00000005140	URB1	99	41.805	ENSCSEG00000012616	urb1	99	41.674	Cynoglossus_semilaevis
ENSSHAG00000005140	URB1	97	50.984	ENSCVAG00000009076	urb1	99	50.984	Cyprinodon_variegatus
ENSSHAG00000005140	URB1	96	49.412	ENSDARG00000060308	urb1	99	49.412	Danio_rerio
ENSSHAG00000005140	URB1	85	64.797	ENSDNOG00000015586	URB1	99	64.797	Dasypus_novemcinctus
ENSSHAG00000005140	URB1	100	62.210	ENSDORG00000006735	Urb1	99	62.253	Dipodomys_ordii
ENSSHAG00000005140	URB1	91	69.231	ENSETEG00000009080	URB1	91	69.231	Echinops_telfairi
ENSSHAG00000005140	URB1	100	63.010	ENSEASG00005007711	URB1	99	63.010	Equus_asinus_asinus
ENSSHAG00000005140	URB1	97	71.655	ENSECAG00000013206	URB1	99	71.204	Equus_caballus
ENSSHAG00000005140	URB1	55	77.824	ENSEEUG00000003626	-	55	77.824	Erinaceus_europaeus
ENSSHAG00000005140	URB1	99	42.901	ENSELUG00000020516	urb1	99	42.988	Esox_lucius
ENSSHAG00000005140	URB1	100	63.246	ENSFCAG00000002177	URB1	99	63.377	Felis_catus
ENSSHAG00000005140	URB1	98	51.230	ENSFALG00000004636	URB1	99	51.426	Ficedula_albicollis
ENSSHAG00000005140	URB1	100	61.632	ENSFDAG00000007288	URB1	95	61.649	Fukomys_damarensis
ENSSHAG00000005140	URB1	99	40.744	ENSFHEG00000000202	urb1	99	41.504	Fundulus_heteroclitus
ENSSHAG00000005140	URB1	92	46.501	ENSGMOG00000001838	urb1	93	46.596	Gadus_morhua
ENSSHAG00000005140	URB1	99	58.355	ENSGALG00000015887	URB1	99	58.355	Gallus_gallus
ENSSHAG00000005140	URB1	99	42.606	ENSGAFG00000020694	urb1	99	42.557	Gambusia_affinis
ENSSHAG00000005140	URB1	99	44.717	ENSGACG00000011703	urb1	99	44.717	Gasterosteus_aculeatus
ENSSHAG00000005140	URB1	100	60.951	ENSGAGG00000022544	URB1	99	60.951	Gopherus_agassizii
ENSSHAG00000005140	URB1	100	63.505	ENSGGOG00000000285	URB1	99	63.509	Gorilla_gorilla
ENSSHAG00000005140	URB1	99	45.015	ENSHBUG00000001904	urb1	99	44.744	Haplochromis_burtoni
ENSSHAG00000005140	URB1	99	61.034	ENSHGLG00000004907	URB1	99	60.991	Heterocephalus_glaber_female
ENSSHAG00000005140	URB1	99	61.572	ENSHGLG00100010749	URB1	99	61.528	Heterocephalus_glaber_male
ENSSHAG00000005140	URB1	70	51.711	ENSHCOG00000018683	urb1	98	51.711	Hippocampus_comes
ENSSHAG00000005140	URB1	99	40.542	ENSIPUG00000014721	urb1	99	40.585	Ictalurus_punctatus
ENSSHAG00000005140	URB1	99	63.628	ENSSTOG00000004539	URB1	99	63.446	Ictidomys_tridecemlineatus
ENSSHAG00000005140	URB1	95	45.967	ENSKMAG00000006001	urb1	99	45.967	Kryptolebias_marmoratus
ENSSHAG00000005140	URB1	97	41.749	ENSLBEG00000027208	urb1	99	41.749	Labrus_bergylta
ENSSHAG00000005140	URB1	100	50.043	ENSLACG00000017059	URB1	100	49.957	Latimeria_chalumnae
ENSSHAG00000005140	URB1	99	45.107	ENSLOCG00000009190	urb1	99	45.107	Lepisosteus_oculatus
ENSSHAG00000005140	URB1	100	63.708	ENSLAFG00000010407	URB1	100	63.688	Loxodonta_africana
ENSSHAG00000005140	URB1	100	64.117	ENSMFAG00000034391	URB1	97	64.117	Macaca_fascicularis
ENSSHAG00000005140	URB1	100	64.030	ENSMMUG00000010295	URB1	99	64.030	Macaca_mulatta
ENSSHAG00000005140	URB1	100	62.872	ENSMNEG00000032981	URB1	99	62.960	Macaca_nemestrina
ENSSHAG00000005140	URB1	100	63.986	ENSMLEG00000041435	URB1	99	64.161	Mandrillus_leucophaeus
ENSSHAG00000005140	URB1	99	42.876	ENSMAMG00000011238	urb1	99	42.876	Mastacembelus_armatus
ENSSHAG00000005140	URB1	99	40.772	ENSMZEG00005011862	urb1	99	40.546	Maylandia_zebra
ENSSHAG00000005140	URB1	98	59.012	ENSMGAG00000014512	URB1	99	59.012	Meleagris_gallopavo
ENSSHAG00000005140	URB1	93	65.211	ENSMAUG00000010516	Urb1	99	65.793	Mesocricetus_auratus
ENSSHAG00000005140	URB1	100	63.398	ENSMICG00000016424	URB1	99	63.529	Microcebus_murinus
ENSSHAG00000005140	URB1	100	59.912	ENSMOCG00000012613	Urb1	99	59.991	Microtus_ochrogaster
ENSSHAG00000005140	URB1	100	87.351	ENSMODG00000021076	URB1	100	87.302	Monodelphis_domestica
ENSSHAG00000005140	URB1	99	42.026	ENSMALG00000017411	urb1	99	41.982	Monopterus_albus
ENSSHAG00000005140	URB1	100	60.656	MGP_CAROLIEiJ_G0020948	Urb1	99	60.700	Mus_caroli
ENSSHAG00000005140	URB1	100	60.856	ENSMUSG00000039929	Urb1	99	60.866	Mus_musculus
ENSSHAG00000005140	URB1	100	60.778	MGP_PahariEiJ_G0016653	Urb1	99	60.778	Mus_pahari
ENSSHAG00000005140	URB1	100	60.613	MGP_SPRETEiJ_G0021854	Urb1	99	60.613	Mus_spretus
ENSSHAG00000005140	URB1	100	62.264	ENSMPUG00000001123	URB1	99	62.264	Mustela_putorius_furo
ENSSHAG00000005140	URB1	100	61.622	ENSNGAG00000001905	Urb1	99	61.726	Nannospalax_galili
ENSSHAG00000005140	URB1	82	45.253	ENSNBRG00000001049	urb1	99	45.185	Neolamprologus_brichardi
ENSSHAG00000005140	URB1	99	62.445	ENSNLEG00000026872	URB1	99	62.500	Nomascus_leucogenys
ENSSHAG00000005140	URB1	90	96.000	ENSMEUG00000010828	URB1	93	92.150	Notamacropus_eugenii
ENSSHAG00000005140	URB1	100	58.148	ENSOPRG00000013482	URB1	100	58.148	Ochotona_princeps
ENSSHAG00000005140	URB1	99	61.559	ENSODEG00000002587	URB1	99	61.559	Octodon_degus
ENSSHAG00000005140	URB1	100	44.560	ENSONIG00000005599	urb1	99	44.560	Oreochromis_niloticus
ENSSHAG00000005140	URB1	100	61.930	ENSOCUG00000009381	URB1	99	61.930	Oryctolagus_cuniculus
ENSSHAG00000005140	URB1	99	43.001	ENSORLG00000003429	urb1	99	42.957	Oryzias_latipes
ENSSHAG00000005140	URB1	99	43.256	ENSORLG00020013785	urb1	99	43.213	Oryzias_latipes_hni
ENSSHAG00000005140	URB1	92	50.281	ENSORLG00015019421	urb1	98	50.281	Oryzias_latipes_hsok
ENSSHAG00000005140	URB1	77	49.882	ENSOMEG00000002094	urb1	97	49.059	Oryzias_melastigma
ENSSHAG00000005140	URB1	100	63.680	ENSOGAG00000017140	URB1	99	63.680	Otolemur_garnettii
ENSSHAG00000005140	URB1	97	62.310	ENSOARG00000013679	URB1	99	62.310	Ovis_aries
ENSSHAG00000005140	URB1	100	64.073	ENSPPAG00000003423	URB1	99	64.079	Pan_paniscus
ENSSHAG00000005140	URB1	100	63.437	ENSPPRG00000023131	URB1	99	63.569	Panthera_pardus
ENSSHAG00000005140	URB1	92	63.052	ENSPTIG00000016125	URB1	97	63.199	Panthera_tigris_altaica
ENSSHAG00000005140	URB1	100	63.986	ENSPTRG00000013852	URB1	99	63.991	Pan_troglodytes
ENSSHAG00000005140	URB1	100	64.117	ENSPANG00000021964	URB1	99	64.292	Papio_anubis
ENSSHAG00000005140	URB1	99	43.907	ENSPKIG00000003683	urb1	98	43.898	Paramormyrops_kingsleyae
ENSSHAG00000005140	URB1	100	60.929	ENSPEMG00000021205	Urb1	99	61.007	Peromyscus_maniculatus_bairdii
ENSSHAG00000005140	URB1	79	32.190	ENSPMAG00000009733	URB1	100	33.205	Petromyzon_marinus
ENSSHAG00000005140	URB1	100	89.511	ENSPCIG00000016350	URB1	100	89.455	Phascolarctos_cinereus
ENSSHAG00000005140	URB1	97	43.031	ENSPLAG00000004371	urb1	99	42.986	Poecilia_latipinna
ENSSHAG00000005140	URB1	99	43.246	ENSPMEG00000006634	urb1	99	43.202	Poecilia_mexicana
ENSSHAG00000005140	URB1	99	43.195	ENSPREG00000013453	urb1	99	43.195	Poecilia_reticulata
ENSSHAG00000005140	URB1	99	63.788	ENSPPYG00000011359	URB1	99	63.668	Pongo_abelii
ENSSHAG00000005140	URB1	100	54.609	ENSPCAG00000007430	URB1	99	54.688	Procavia_capensis
ENSSHAG00000005140	URB1	100	63.756	ENSPCOG00000022695	URB1	99	63.979	Propithecus_coquereli
ENSSHAG00000005140	URB1	100	62.643	ENSPVAG00000000889	URB1	99	62.643	Pteropus_vampyrus
ENSSHAG00000005140	URB1	99	43.935	ENSPNYG00000010589	urb1	99	43.674	Pundamilia_nyererei
ENSSHAG00000005140	URB1	98	40.762	ENSPNAG00000019324	urb1	99	40.454	Pygocentrus_nattereri
ENSSHAG00000005140	URB1	100	61.067	ENSRNOG00000002080	Urb1	99	61.111	Rattus_norvegicus
ENSSHAG00000005140	URB1	100	63.958	ENSRBIG00000033122	URB1	99	64.176	Rhinopithecus_bieti
ENSSHAG00000005140	URB1	100	63.942	ENSRROG00000040237	URB1	99	64.161	Rhinopithecus_roxellana
ENSSHAG00000005140	URB1	100	63.497	ENSSBOG00000027672	URB1	99	63.823	Saimiri_boliviensis_boliviensis
ENSSHAG00000005140	URB1	93	45.455	ENSSFOG00015000339	urb1	99	45.579	Scleropages_formosus
ENSSHAG00000005140	URB1	99	43.573	ENSSMAG00000003782	urb1	99	43.704	Scophthalmus_maximus
ENSSHAG00000005140	URB1	100	44.546	ENSSDUG00000012313	urb1	99	44.502	Seriola_dumerili
ENSSHAG00000005140	URB1	100	44.324	ENSSLDG00000023179	urb1	99	44.280	Seriola_lalandi_dorsalis
ENSSHAG00000005140	URB1	100	58.046	ENSSPUG00000012447	URB1	99	58.090	Sphenodon_punctatus
ENSSHAG00000005140	URB1	100	44.766	ENSSPAG00000006325	urb1	99	44.766	Stegastes_partitus
ENSSHAG00000005140	URB1	100	62.330	ENSSSCG00000032024	URB1	99	62.330	Sus_scrofa
ENSSHAG00000005140	URB1	73	59.750	ENSTGUG00000013442	URB1	100	59.750	Taeniopygia_guttata
ENSSHAG00000005140	URB1	99	43.687	ENSTRUG00000009372	urb1	99	43.643	Takifugu_rubripes
ENSSHAG00000005140	URB1	99	42.463	ENSTNIG00000016277	urb1	99	42.419	Tetraodon_nigroviridis
ENSSHAG00000005140	URB1	81	70.435	ENSTBEG00000010044	URB1	80	70.435	Tupaia_belangeri
ENSSHAG00000005140	URB1	91	65.557	ENSTTRG00000007712	URB1	92	65.557	Tursiops_truncatus
ENSSHAG00000005140	URB1	100	63.059	ENSUAMG00000012231	URB1	99	63.084	Ursus_americanus
ENSSHAG00000005140	URB1	93	63.385	ENSUMAG00000017419	URB1	99	63.858	Ursus_maritimus
ENSSHAG00000005140	URB1	68	79.365	ENSVPAG00000001164	URB1	68	79.365	Vicugna_pacos
ENSSHAG00000005140	URB1	100	64.126	ENSVVUG00000000551	URB1	99	64.126	Vulpes_vulpes
ENSSHAG00000005140	URB1	100	51.773	ENSXETG00000009895	urb1	99	51.817	Xenopus_tropicalis
ENSSHAG00000005140	URB1	99	40.859	ENSXCOG00000005500	urb1	99	40.859	Xiphophorus_couchianus
ENSSHAG00000005140	URB1	99	41.272	ENSXMAG00000007253	urb1	99	41.272	Xiphophorus_maculatus