EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000005252 (Gene tree)
Gene ID: 100914817
Gene Symbol: -
Alias: -
Full Name: single-stranded DNA cytosine deaminase-like
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 17804 bases
Position: chrGL849855.1:147436-165239
Accession: 100914817
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000006033	APOBEC_N	PF08210.11	3.4e-26	1	1
ENSSHAP00000006033	APOBEC_C	PF05240.14	1.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000006087	-	2195	-	ENSSHAP00000006033	260 (aa)	XP_003765824	G3VS78

Gene Model

Click here to download ENSSHAG00000005252's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000005252's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000005252	-	63	34.503	ENSSHAG00000008694	AICDA	83	34.503

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000005252	-	67	47.399	ENSACAG00000024915	-	93	47.399	Anolis_carolinensis
ENSSHAG00000005252	-	67	42.529	ENSLACG00000015876	-	94	42.529	Latimeria_chalumnae
ENSSHAG00000005252	-	99	33.588	ENSLOCG00000003595	-	94	33.588	Lepisosteus_oculatus
ENSSHAG00000005252	-	100	72.308	ENSMODG00000029467	-	100	72.308	Monodelphis_domestica
ENSSHAG00000005252	-	64	35.329	ENSPKIG00000010937	-	80	35.329	Paramormyrops_kingsleyae
ENSSHAG00000005252	-	100	80.000	ENSPCIG00000027633	-	100	80.000	Phascolarctos_cinereus
ENSSHAG00000005252	-	59	40.000	ENSSFOG00015006223	-	90	40.000	Scleropages_formosus