EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000006500 (Gene tree)
Gene ID: 100925407
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 15647 bases
Position: chrGL841407.1:234177-249823
Accession: 100925407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000007480	CPSF_A	PF03178.15	7.1e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000007542	CPSF1-201	4380	XM_023496651	ENSSHAP00000007480	1449 (aa)	XP_023352419	G3VWC5

Gene Model

Click here to download ENSSHAG00000006500's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000006500's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000006500	CPSF1	100	92.695	ENSG00000071894	CPSF1	100	92.695	Homo_sapiens
ENSSHAG00000006500	CPSF1	100	78.408	ENSAPOG00000019621	cpsf1	100	78.273	Acanthochromis_polyacanthus
ENSSHAG00000006500	CPSF1	97	91.809	ENSAMEG00000005557	CPSF1	100	91.809	Ailuropoda_melanoleuca
ENSSHAG00000006500	CPSF1	100	78.857	ENSACIG00000006112	cpsf1	100	78.650	Amphilophus_citrinellus
ENSSHAG00000006500	CPSF1	100	79.588	ENSAOCG00000007120	cpsf1	100	79.588	Amphiprion_ocellaris
ENSSHAG00000006500	CPSF1	100	79.808	ENSAPEG00000005755	cpsf1	100	79.876	Amphiprion_percula
ENSSHAG00000006500	CPSF1	100	78.519	ENSATEG00000011097	cpsf1	100	78.855	Anabas_testudineus
ENSSHAG00000006500	CPSF1	93	83.556	ENSACAG00000009655	CPSF1	100	83.556	Anolis_carolinensis
ENSSHAG00000006500	CPSF1	100	92.828	ENSANAG00000036514	CPSF1	100	92.828	Aotus_nancymaae
ENSSHAG00000006500	CPSF1	100	77.686	ENSACLG00000012231	cpsf1	99	79.704	Astatotilapia_calliptera
ENSSHAG00000006500	CPSF1	100	73.659	ENSAMXG00000008485	cpsf1	100	73.728	Astyanax_mexicanus
ENSSHAG00000006500	CPSF1	100	91.655	ENSBTAG00000008355	CPSF1	100	92.103	Bos_taurus
ENSSHAG00000006500	CPSF1	100	31.672	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSSHAG00000006500	CPSF1	100	92.690	ENSCJAG00000021421	CPSF1	100	92.690	Callithrix_jacchus
ENSSHAG00000006500	CPSF1	97	93.443	ENSCAFG00000001600	CPSF1	100	93.975	Canis_familiaris
ENSSHAG00000006500	CPSF1	100	93.582	ENSCAFG00020020821	CPSF1	100	93.582	Canis_lupus_dingo
ENSSHAG00000006500	CPSF1	100	88.316	ENSCHIG00000015833	CPSF1	100	88.316	Capra_hircus
ENSSHAG00000006500	CPSF1	100	93.517	ENSTSYG00000028560	CPSF1	100	93.517	Carlito_syrichta
ENSSHAG00000006500	CPSF1	97	92.137	ENSCAPG00000014921	CPSF1	99	92.137	Cavia_aperea
ENSSHAG00000006500	CPSF1	100	91.448	ENSCPOG00000011448	CPSF1	100	91.448	Cavia_porcellus
ENSSHAG00000006500	CPSF1	100	92.759	ENSCCAG00000037658	CPSF1	100	92.759	Cebus_capucinus
ENSSHAG00000006500	CPSF1	100	92.552	ENSCATG00000037234	CPSF1	100	92.552	Cercocebus_atys
ENSSHAG00000006500	CPSF1	100	93.099	ENSCLAG00000012166	CPSF1	100	93.099	Chinchilla_lanigera
ENSSHAG00000006500	CPSF1	100	92.552	ENSCSAG00000008502	CPSF1	100	92.552	Chlorocebus_sabaeus
ENSSHAG00000006500	CPSF1	99	89.617	ENSCPBG00000018910	CPSF1	96	89.617	Chrysemys_picta_bellii
ENSSHAG00000006500	CPSF1	96	47.966	ENSCING00000000514	-	100	47.894	Ciona_intestinalis
ENSSHAG00000006500	CPSF1	99	48.128	ENSCSAVG00000002293	-	98	50.235	Ciona_savignyi
ENSSHAG00000006500	CPSF1	99	87.953	ENSCANG00000032760	CPSF1	100	87.500	Colobus_angolensis_palliatus
ENSSHAG00000006500	CPSF1	100	92.616	ENSCGRG00001016344	Cpsf1	100	92.616	Cricetulus_griseus_chok1gshd
ENSSHAG00000006500	CPSF1	100	90.269	ENSCGRG00000003118	Cpsf1	100	90.269	Cricetulus_griseus_crigri
ENSSHAG00000006500	CPSF1	100	77.893	ENSCSEG00000013464	cpsf1	100	77.755	Cynoglossus_semilaevis
ENSSHAG00000006500	CPSF1	85	77.856	ENSCVAG00000014059	cpsf1	100	75.000	Cyprinodon_variegatus
ENSSHAG00000006500	CPSF1	100	80.014	ENSDARG00000034178	cpsf1	100	80.082	Danio_rerio
ENSSHAG00000006500	CPSF1	57	94.783	ENSDNOG00000043654	CPSF1	94	94.783	Dasypus_novemcinctus
ENSSHAG00000006500	CPSF1	97	92.852	ENSDORG00000006278	Cpsf1	99	92.852	Dipodomys_ordii
ENSSHAG00000006500	CPSF1	100	45.339	FBgn0024698	Cpsf160	100	45.302	Drosophila_melanogaster
ENSSHAG00000006500	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSSHAG00000006500	CPSF1	100	93.996	ENSEASG00005010774	CPSF1	100	93.996	Equus_asinus_asinus
ENSSHAG00000006500	CPSF1	100	94.134	ENSECAG00000022209	CPSF1	100	94.134	Equus_caballus
ENSSHAG00000006500	CPSF1	100	91.793	ENSEEUG00000000471	CPSF1	100	91.793	Erinaceus_europaeus
ENSSHAG00000006500	CPSF1	100	78.596	ENSELUG00000012271	cpsf1	100	78.944	Esox_lucius
ENSSHAG00000006500	CPSF1	100	93.099	ENSFDAG00000016060	CPSF1	100	93.099	Fukomys_damarensis
ENSSHAG00000006500	CPSF1	100	77.587	ENSFHEG00000016801	cpsf1	100	77.450	Fundulus_heteroclitus
ENSSHAG00000006500	CPSF1	100	78.157	ENSGMOG00000000796	cpsf1	100	78.136	Gadus_morhua
ENSSHAG00000006500	CPSF1	96	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSSHAG00000006500	CPSF1	100	78.984	ENSGACG00000008703	cpsf1	100	78.836	Gasterosteus_aculeatus
ENSSHAG00000006500	CPSF1	100	86.107	ENSGAGG00000004276	CPSF1	98	89.707	Gopherus_agassizii
ENSSHAG00000006500	CPSF1	100	92.754	ENSGGOG00000016185	CPSF1	100	92.754	Gorilla_gorilla
ENSSHAG00000006500	CPSF1	100	80.028	ENSHBUG00000018900	cpsf1	100	79.821	Haplochromis_burtoni
ENSSHAG00000006500	CPSF1	100	93.030	ENSHGLG00000016139	CPSF1	100	93.030	Heterocephalus_glaber_female
ENSSHAG00000006500	CPSF1	100	92.961	ENSHGLG00100009750	CPSF1	100	92.961	Heterocephalus_glaber_male
ENSSHAG00000006500	CPSF1	100	77.402	ENSHCOG00000018509	cpsf1	100	77.507	Hippocampus_comes
ENSSHAG00000006500	CPSF1	100	76.886	ENSIPUG00000011259	cpsf1	100	76.886	Ictalurus_punctatus
ENSSHAG00000006500	CPSF1	97	92.877	ENSSTOG00000009957	CPSF1	99	92.877	Ictidomys_tridecemlineatus
ENSSHAG00000006500	CPSF1	100	92.754	ENSJJAG00000023002	Cpsf1	100	92.754	Jaculus_jaculus
ENSSHAG00000006500	CPSF1	91	85.266	ENSKMAG00000001940	cpsf1	99	85.266	Kryptolebias_marmoratus
ENSSHAG00000006500	CPSF1	100	78.026	ENSLBEG00000003601	cpsf1	100	78.378	Labrus_bergylta
ENSSHAG00000006500	CPSF1	88	82.212	ENSLACG00000000233	CPSF1	100	69.310	Latimeria_chalumnae
ENSSHAG00000006500	CPSF1	100	79.052	ENSLOCG00000008484	cpsf1	100	79.396	Lepisosteus_oculatus
ENSSHAG00000006500	CPSF1	97	93.567	ENSLAFG00000022601	CPSF1	99	93.567	Loxodonta_africana
ENSSHAG00000006500	CPSF1	100	92.552	ENSMFAG00000037013	CPSF1	100	92.552	Macaca_fascicularis
ENSSHAG00000006500	CPSF1	100	92.621	ENSMMUG00000007380	CPSF1	100	92.621	Macaca_mulatta
ENSSHAG00000006500	CPSF1	97	92.857	ENSMNEG00000043564	CPSF1	99	92.857	Macaca_nemestrina
ENSSHAG00000006500	CPSF1	100	92.690	ENSMLEG00000043010	CPSF1	100	92.690	Mandrillus_leucophaeus
ENSSHAG00000006500	CPSF1	100	79.015	ENSMAMG00000003803	cpsf1	100	79.217	Mastacembelus_armatus
ENSSHAG00000006500	CPSF1	100	77.755	ENSMZEG00005001168	cpsf1	100	77.548	Maylandia_zebra
ENSSHAG00000006500	CPSF1	100	92.616	ENSMAUG00000003601	Cpsf1	100	92.616	Mesocricetus_auratus
ENSSHAG00000006500	CPSF1	100	93.168	ENSMICG00000015767	CPSF1	100	93.168	Microcebus_murinus
ENSSHAG00000006500	CPSF1	100	92.685	ENSMOCG00000022758	Cpsf1	100	92.685	Microtus_ochrogaster
ENSSHAG00000006500	CPSF1	100	79.215	ENSMMOG00000021245	cpsf1	100	79.215	Mola_mola
ENSSHAG00000006500	CPSF1	100	99.448	ENSMODG00000010755	CPSF1	100	99.448	Monodelphis_domestica
ENSSHAG00000006500	CPSF1	100	77.973	ENSMALG00000020545	cpsf1	100	77.973	Monopterus_albus
ENSSHAG00000006500	CPSF1	100	93.099	MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.099	Mus_caroli
ENSSHAG00000006500	CPSF1	100	93.030	ENSMUSG00000034022	Cpsf1	100	93.030	Mus_musculus
ENSSHAG00000006500	CPSF1	100	93.168	MGP_PahariEiJ_G0019946	Cpsf1	100	93.168	Mus_pahari
ENSSHAG00000006500	CPSF1	100	93.030	MGP_SPRETEiJ_G0020839	Cpsf1	100	93.030	Mus_spretus
ENSSHAG00000006500	CPSF1	93	93.279	ENSMPUG00000006419	CPSF1	93	93.279	Mustela_putorius_furo
ENSSHAG00000006500	CPSF1	100	92.961	ENSNGAG00000022460	Cpsf1	100	92.961	Nannospalax_galili
ENSSHAG00000006500	CPSF1	100	75.017	ENSNBRG00000000813	cpsf1	100	75.086	Neolamprologus_brichardi
ENSSHAG00000006500	CPSF1	86	79.532	ENSNLEG00000010633	-	100	87.037	Nomascus_leucogenys
ENSSHAG00000006500	CPSF1	82	99.419	ENSMEUG00000014922	CPSF1	85	99.419	Notamacropus_eugenii
ENSSHAG00000006500	CPSF1	61	95.918	ENSOPRG00000004693	-	71	95.918	Ochotona_princeps
ENSSHAG00000006500	CPSF1	100	93.237	ENSODEG00000013995	CPSF1	100	93.237	Octodon_degus
ENSSHAG00000006500	CPSF1	100	80.165	ENSONIG00000007676	cpsf1	100	79.959	Oreochromis_niloticus
ENSSHAG00000006500	CPSF1	57	92.143	ENSOANG00000010716	CPSF1	87	92.143	Ornithorhynchus_anatinus
ENSSHAG00000006500	CPSF1	100	78.305	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSSHAG00000006500	CPSF1	100	78.441	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSSHAG00000006500	CPSF1	100	78.373	ENSORLG00015009979	cpsf1	100	78.441	Oryzias_latipes_hsok
ENSSHAG00000006500	CPSF1	100	78.455	ENSOMEG00000011849	cpsf1	100	78.455	Oryzias_melastigma
ENSSHAG00000006500	CPSF1	100	92.966	ENSOGAG00000000315	CPSF1	100	92.966	Otolemur_garnettii
ENSSHAG00000006500	CPSF1	100	92.828	ENSPPAG00000019280	CPSF1	100	92.828	Pan_paniscus
ENSSHAG00000006500	CPSF1	100	91.254	ENSPTRG00000051253	-	100	91.254	Pan_troglodytes
ENSSHAG00000006500	CPSF1	100	92.828	ENSPTRG00000049288	-	100	92.828	Pan_troglodytes
ENSSHAG00000006500	CPSF1	97	92.786	ENSPANG00000015005	CPSF1	99	92.786	Papio_anubis
ENSSHAG00000006500	CPSF1	100	80.179	ENSPKIG00000002582	cpsf1	100	80.514	Paramormyrops_kingsleyae
ENSSHAG00000006500	CPSF1	100	99.379	ENSPCIG00000009035	CPSF1	100	99.379	Phascolarctos_cinereus
ENSSHAG00000006500	CPSF1	100	76.892	ENSPFOG00000012870	cpsf1	100	77.027	Poecilia_formosa
ENSSHAG00000006500	CPSF1	100	76.840	ENSPREG00000016307	cpsf1	100	76.975	Poecilia_reticulata
ENSSHAG00000006500	CPSF1	100	85.172	ENSPPYG00000018973	CPSF1	100	85.172	Pongo_abelii
ENSSHAG00000006500	CPSF1	91	94.318	ENSPCAG00000011541	CPSF1	94	94.318	Procavia_capensis
ENSSHAG00000006500	CPSF1	100	89.172	ENSPCOG00000020001	CPSF1	100	89.172	Propithecus_coquereli
ENSSHAG00000006500	CPSF1	91	98.571	ENSPVAG00000006761	CPSF1	91	98.571	Pteropus_vampyrus
ENSSHAG00000006500	CPSF1	100	78.933	ENSPNYG00000004906	cpsf1	100	78.933	Pundamilia_nyererei
ENSSHAG00000006500	CPSF1	100	75.343	ENSPNAG00000024395	cpsf1	100	75.343	Pygocentrus_nattereri
ENSSHAG00000006500	CPSF1	100	92.961	ENSRNOG00000030705	Cpsf1	100	92.961	Rattus_norvegicus
ENSSHAG00000006500	CPSF1	100	92.621	ENSRBIG00000044907	CPSF1	100	92.621	Rhinopithecus_bieti
ENSSHAG00000006500	CPSF1	100	92.552	ENSRROG00000044861	CPSF1	100	92.552	Rhinopithecus_roxellana
ENSSHAG00000006500	CPSF1	97	92.929	ENSSBOG00000027177	CPSF1	99	92.929	Saimiri_boliviensis_boliviensis
ENSSHAG00000006500	CPSF1	100	78.213	ENSSFOG00015004606	cpsf1	100	81.018	Scleropages_formosus
ENSSHAG00000006500	CPSF1	100	78.581	ENSSMAG00000020547	cpsf1	100	78.649	Scophthalmus_maximus
ENSSHAG00000006500	CPSF1	100	79.367	ENSSDUG00000001100	cpsf1	100	79.505	Seriola_dumerili
ENSSHAG00000006500	CPSF1	100	79.628	ENSSLDG00000003619	cpsf1	100	79.560	Seriola_lalandi_dorsalis
ENSSHAG00000006500	CPSF1	89	91.667	ENSSARG00000003643	CPSF1	92	91.667	Sorex_araneus
ENSSHAG00000006500	CPSF1	96	89.273	ENSSPUG00000014396	CPSF1	99	89.273	Sphenodon_punctatus
ENSSHAG00000006500	CPSF1	100	78.596	ENSSPAG00000005349	cpsf1	100	78.663	Stegastes_partitus
ENSSHAG00000006500	CPSF1	100	92.616	ENSSSCG00000005906	CPSF1	100	92.616	Sus_scrofa
ENSSHAG00000006500	CPSF1	96	78.456	ENSTRUG00000013134	cpsf1	99	78.456	Takifugu_rubripes
ENSSHAG00000006500	CPSF1	100	78.879	ENSTNIG00000014027	cpsf1	100	78.606	Tetraodon_nigroviridis
ENSSHAG00000006500	CPSF1	77	84.354	ENSTBEG00000001756	CPSF1	91	84.354	Tupaia_belangeri
ENSSHAG00000006500	CPSF1	90	96.718	ENSTTRG00000001937	CPSF1	90	96.718	Tursiops_truncatus
ENSSHAG00000006500	CPSF1	97	93.799	ENSUAMG00000006476	CPSF1	98	93.799	Ursus_americanus
ENSSHAG00000006500	CPSF1	100	77.701	ENSXCOG00000003608	cpsf1	100	77.701	Xiphophorus_couchianus
ENSSHAG00000006500	CPSF1	100	77.495	ENSXMAG00000005798	cpsf1	100	77.357	Xiphophorus_maculatus