EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000006635 (Gene tree)
Gene ID: 100919609
Gene Symbol: CPSF6
Alias: CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 21071 bases
Position: chrGL861557.1:246451-267521
Accession: 13871
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000007635	RRM_1	PF00076.22	5.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000007698	CPSF6-201	1617	-	ENSSHAP00000007635	538 (aa)	-	G3VWT0

Gene Model

Click here to download ENSSHAG00000006635's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000006635's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000006635	CPSF6	63	48.241	ENSSHAG00000011964	CPSF7	68	48.851

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000006635	CPSF6	65	52.381	ENSG00000149532	CPSF7	91	47.159	Homo_sapiens
ENSSHAG00000006635	CPSF6	94	95.059	ENSG00000111605	CPSF6	70	90.667	Homo_sapiens
ENSSHAG00000006635	CPSF6	99	94.424	ENSAMEG00000011781	CPSF6	96	94.424	Ailuropoda_melanoleuca
ENSSHAG00000006635	CPSF6	63	38.265	ENSAOCG00000012357	CPSF7	69	39.645	Amphiprion_ocellaris
ENSSHAG00000006635	CPSF6	94	94.862	ENSANAG00000019240	CPSF6	95	95.597	Aotus_nancymaae
ENSSHAG00000006635	CPSF6	63	45.860	ENSANAG00000024635	CPSF7	67	45.860	Aotus_nancymaae
ENSSHAG00000006635	CPSF6	61	80.702	ENSAMXG00000016745	CPSF6	70	81.065	Astyanax_mexicanus
ENSSHAG00000006635	CPSF6	63	48.731	ENSBTAG00000015263	CPSF7	68	48.023	Bos_taurus
ENSSHAG00000006635	CPSF6	94	95.059	ENSBTAG00000007323	CPSF6	51	78.808	Bos_taurus
ENSSHAG00000006635	CPSF6	75	45.652	ENSCJAG00000019282	CPSF7	79	47.458	Callithrix_jacchus
ENSSHAG00000006635	CPSF6	94	95.059	ENSCJAG00000001798	CPSF6	51	79.139	Callithrix_jacchus
ENSSHAG00000006635	CPSF6	99	94.786	ENSCAFG00000000424	CPSF6	100	94.786	Canis_familiaris
ENSSHAG00000006635	CPSF6	63	48.731	ENSCAFG00000016152	CPSF7	68	48.588	Canis_familiaris
ENSSHAG00000006635	CPSF6	94	95.059	ENSCAFG00020016950	CPSF6	51	79.139	Canis_lupus_dingo
ENSSHAG00000006635	CPSF6	63	48.731	ENSCAFG00020012753	CPSF7	68	48.588	Canis_lupus_dingo
ENSSHAG00000006635	CPSF6	94	95.059	ENSCHIG00000010792	CPSF6	51	78.808	Capra_hircus
ENSSHAG00000006635	CPSF6	63	48.731	ENSCHIG00000014655	CPSF7	68	48.023	Capra_hircus
ENSSHAG00000006635	CPSF6	63	48.731	ENSTSYG00000010138	-	68	48.588	Carlito_syrichta
ENSSHAG00000006635	CPSF6	78	96.203	ENSTSYG00000008591	CPSF6	51	79.402	Carlito_syrichta
ENSSHAG00000006635	CPSF6	53	56.115	ENSCAPG00000006384	CPSF7	70	48.588	Cavia_aperea
ENSSHAG00000006635	CPSF6	53	56.115	ENSCPOG00000009980	CPSF7	68	48.588	Cavia_porcellus
ENSSHAG00000006635	CPSF6	94	94.862	ENSCPOG00000015201	CPSF6	51	79.139	Cavia_porcellus
ENSSHAG00000006635	CPSF6	63	48.223	ENSCCAG00000032367	CPSF7	68	48.023	Cebus_capucinus
ENSSHAG00000006635	CPSF6	94	95.059	ENSCCAG00000028149	CPSF6	51	79.139	Cebus_capucinus
ENSSHAG00000006635	CPSF6	94	95.059	ENSCATG00000039288	CPSF6	51	79.139	Cercocebus_atys
ENSSHAG00000006635	CPSF6	66	48.223	ENSCATG00000042801	CPSF7	73	48.023	Cercocebus_atys
ENSSHAG00000006635	CPSF6	53	56.115	ENSCLAG00000003174	CPSF7	68	48.023	Chinchilla_lanigera
ENSSHAG00000006635	CPSF6	94	94.851	ENSCLAG00000010149	CPSF6	91	94.872	Chinchilla_lanigera
ENSSHAG00000006635	CPSF6	66	48.223	ENSCSAG00000006414	CPSF7	73	48.023	Chlorocebus_sabaeus
ENSSHAG00000006635	CPSF6	94	86.372	ENSCSAG00000004232	CPSF6	51	79.139	Chlorocebus_sabaeus
ENSSHAG00000006635	CPSF6	55	51.701	ENSCSAVG00000000161	-	51	55.072	Ciona_savignyi
ENSSHAG00000006635	CPSF6	78	96.774	ENSCANG00000037294	CPSF6	50	98.864	Colobus_angolensis_palliatus
ENSSHAG00000006635	CPSF6	64	48.731	ENSCGRG00001020382	Cpsf7	68	48.588	Cricetulus_griseus_chok1gshd
ENSSHAG00000006635	CPSF6	94	95.059	ENSCGRG00001018082	Cpsf6	51	79.139	Cricetulus_griseus_chok1gshd
ENSSHAG00000006635	CPSF6	70	47.945	ENSCGRG00000017954	Cpsf7	73	48.588	Cricetulus_griseus_crigri
ENSSHAG00000006635	CPSF6	94	94.872	ENSCGRG00000016909	Cpsf6	50	98.864	Cricetulus_griseus_crigri
ENSSHAG00000006635	CPSF6	51	43.299	ENSCSEG00000001956	CPSF7	57	43.299	Cynoglossus_semilaevis
ENSSHAG00000006635	CPSF6	64	35.922	ENSCVAG00000007392	CPSF7	66	42.282	Cyprinodon_variegatus
ENSSHAG00000006635	CPSF6	75	46.196	ENSDNOG00000018517	CPSF7	79	48.023	Dasypus_novemcinctus
ENSSHAG00000006635	CPSF6	94	95.069	ENSDORG00000002950	Cpsf6	93	95.266	Dipodomys_ordii
ENSSHAG00000006635	CPSF6	63	45.860	ENSETEG00000003765	CPSF7	67	47.977	Echinops_telfairi
ENSSHAG00000006635	CPSF6	99	82.404	ENSETEG00000002097	CPSF6	97	82.404	Echinops_telfairi
ENSSHAG00000006635	CPSF6	55	54.730	ENSEASG00005008196	CPSF7	68	48.588	Equus_asinus_asinus
ENSSHAG00000006635	CPSF6	94	95.059	ENSEASG00005008066	CPSF6	51	79.139	Equus_asinus_asinus
ENSSHAG00000006635	CPSF6	94	95.059	ENSECAG00000015988	CPSF6	51	79.139	Equus_caballus
ENSSHAG00000006635	CPSF6	65	53.175	ENSECAG00000018521	CPSF7	86	48.023	Equus_caballus
ENSSHAG00000006635	CPSF6	94	86.162	ENSEEUG00000015039	CPSF6	53	78.738	Erinaceus_europaeus
ENSSHAG00000006635	CPSF6	75	46.196	ENSFCAG00000013677	CPSF7	86	48.023	Felis_catus
ENSSHAG00000006635	CPSF6	94	94.862	ENSFCAG00000002855	CPSF6	51	78.808	Felis_catus
ENSSHAG00000006635	CPSF6	88	88.095	ENSFALG00000010157	CPSF6	94	94.466	Ficedula_albicollis
ENSSHAG00000006635	CPSF6	62	51.064	ENSFALG00000011927	CPSF7	71	52.874	Ficedula_albicollis
ENSSHAG00000006635	CPSF6	94	94.862	ENSFDAG00000002281	CPSF6	51	79.402	Fukomys_damarensis
ENSSHAG00000006635	CPSF6	85	38.495	ENSFDAG00000003919	CPSF7	68	48.588	Fukomys_damarensis
ENSSHAG00000006635	CPSF6	50	73.498	ENSFHEG00000019693	cpsf6	51	69.966	Fundulus_heteroclitus
ENSSHAG00000006635	CPSF6	52	81.169	ENSGMOG00000012951	cpsf6	50	81.169	Gadus_morhua
ENSSHAG00000006635	CPSF6	54	58.394	ENSGALG00000040962	CPSF7	59	49.714	Gallus_gallus
ENSSHAG00000006635	CPSF6	94	95.059	ENSGGOG00000008211	CPSF6	51	79.139	Gorilla_gorilla
ENSSHAG00000006635	CPSF6	56	56.115	ENSHGLG00000019090	-	73	48.588	Heterocephalus_glaber_female
ENSSHAG00000006635	CPSF6	94	94.862	ENSHGLG00000000792	CPSF6	51	79.139	Heterocephalus_glaber_female
ENSSHAG00000006635	CPSF6	56	56.115	ENSHGLG00100013933	-	74	48.588	Heterocephalus_glaber_male
ENSSHAG00000006635	CPSF6	94	94.862	ENSHGLG00100013861	CPSF6	50	98.864	Heterocephalus_glaber_male
ENSSHAG00000006635	CPSF6	63	48.731	ENSSTOG00000007708	CPSF7	68	48.588	Ictidomys_tridecemlineatus
ENSSHAG00000006635	CPSF6	67	48.731	ENSJJAG00000019390	Cpsf7	73	48.588	Jaculus_jaculus
ENSSHAG00000006635	CPSF6	79	39.181	ENSLBEG00000000947	CPSF7	80	32.057	Labrus_bergylta
ENSSHAG00000006635	CPSF6	64	44.872	ENSLACG00000005542	CPSF7	69	44.872	Latimeria_chalumnae
ENSSHAG00000006635	CPSF6	65	87.079	ENSLOCG00000016190	cpsf6	63	85.859	Lepisosteus_oculatus
ENSSHAG00000006635	CPSF6	63	49.239	ENSLAFG00000032084	CPSF7	68	49.153	Loxodonta_africana
ENSSHAG00000006635	CPSF6	99	96.462	ENSLAFG00000030413	CPSF6	97	96.462	Loxodonta_africana
ENSSHAG00000006635	CPSF6	94	95.059	ENSMFAG00000045318	CPSF6	51	79.139	Macaca_fascicularis
ENSSHAG00000006635	CPSF6	64	48.223	ENSMFAG00000001401	CPSF7	69	48.023	Macaca_fascicularis
ENSSHAG00000006635	CPSF6	94	95.059	ENSMMUG00000002921	CPSF6	51	79.139	Macaca_mulatta
ENSSHAG00000006635	CPSF6	66	48.223	ENSMMUG00000015280	CPSF7	73	48.023	Macaca_mulatta
ENSSHAG00000006635	CPSF6	66	48.223	ENSMNEG00000029585	CPSF7	73	48.023	Macaca_nemestrina
ENSSHAG00000006635	CPSF6	94	95.059	ENSMNEG00000036311	CPSF6	51	79.139	Macaca_nemestrina
ENSSHAG00000006635	CPSF6	78	96.774	ENSMLEG00000003957	CPSF6	50	98.864	Mandrillus_leucophaeus
ENSSHAG00000006635	CPSF6	64	48.223	ENSMLEG00000031269	CPSF7	69	48.023	Mandrillus_leucophaeus
ENSSHAG00000006635	CPSF6	94	95.059	ENSMAUG00000013240	Cpsf6	51	79.139	Mesocricetus_auratus
ENSSHAG00000006635	CPSF6	64	48.731	ENSMAUG00000013020	Cpsf7	68	48.588	Mesocricetus_auratus
ENSSHAG00000006635	CPSF6	63	48.731	ENSMICG00000013788	CPSF7	68	48.588	Microcebus_murinus
ENSSHAG00000006635	CPSF6	94	95.059	ENSMICG00000007385	-	51	79.139	Microcebus_murinus
ENSSHAG00000006635	CPSF6	64	48.731	ENSMOCG00000000072	Cpsf7	68	48.588	Microtus_ochrogaster
ENSSHAG00000006635	CPSF6	94	95.059	ENSMOCG00000013982	Cpsf6	51	79.139	Microtus_ochrogaster
ENSSHAG00000006635	CPSF6	99	96.276	ENSMODG00000007123	CPSF6	97	96.276	Monodelphis_domestica
ENSSHAG00000006635	CPSF6	63	47.236	ENSMODG00000020364	CPSF7	69	51.124	Monodelphis_domestica
ENSSHAG00000006635	CPSF6	73	81.818	ENSMALG00000014908	cpsf6	74	82.418	Monopterus_albus
ENSSHAG00000006635	CPSF6	64	48.731	MGP_CAROLIEiJ_G0022690	Cpsf7	68	48.588	Mus_caroli
ENSSHAG00000006635	CPSF6	94	95.059	MGP_CAROLIEiJ_G0015834	Cpsf6	51	79.139	Mus_caroli
ENSSHAG00000006635	CPSF6	94	94.664	ENSMUSG00000055531	Cpsf6	51	78.477	Mus_musculus
ENSSHAG00000006635	CPSF6	64	48.731	ENSMUSG00000034820	Cpsf7	68	48.588	Mus_musculus
ENSSHAG00000006635	CPSF6	79	99.054	MGP_PahariEiJ_G0031253	Cpsf6	83	99.054	Mus_pahari
ENSSHAG00000006635	CPSF6	64	48.731	MGP_PahariEiJ_G0014184	Cpsf7	68	48.588	Mus_pahari
ENSSHAG00000006635	CPSF6	64	48.731	MGP_SPRETEiJ_G0023604	Cpsf7	68	48.588	Mus_spretus
ENSSHAG00000006635	CPSF6	94	94.664	MGP_SPRETEiJ_G0016657	Cpsf6	51	78.477	Mus_spretus
ENSSHAG00000006635	CPSF6	99	94.786	ENSMPUG00000017502	CPSF6	97	94.786	Mustela_putorius_furo
ENSSHAG00000006635	CPSF6	63	47.716	ENSMPUG00000014163	CPSF7	66	47.458	Mustela_putorius_furo
ENSSHAG00000006635	CPSF6	67	92.130	ENSMLUG00000028728	-	88	93.909	Myotis_lucifugus
ENSSHAG00000006635	CPSF6	99	94.786	ENSMLUG00000004172	-	97	94.786	Myotis_lucifugus
ENSSHAG00000006635	CPSF6	66	48.731	ENSMLUG00000013278	CPSF7	73	48.588	Myotis_lucifugus
ENSSHAG00000006635	CPSF6	94	95.059	ENSNGAG00000015901	Cpsf6	51	79.139	Nannospalax_galili
ENSSHAG00000006635	CPSF6	64	48.731	ENSNGAG00000005031	Cpsf7	68	48.588	Nannospalax_galili
ENSSHAG00000006635	CPSF6	94	95.059	ENSNLEG00000003798	CPSF6	51	79.139	Nomascus_leucogenys
ENSSHAG00000006635	CPSF6	63	48.223	ENSNLEG00000002529	CPSF7	62	48.023	Nomascus_leucogenys
ENSSHAG00000006635	CPSF6	63	47.739	ENSMEUG00000002261	CPSF7	68	48.315	Notamacropus_eugenii
ENSSHAG00000006635	CPSF6	94	86.347	ENSOPRG00000005199	CPSF6	53	77.741	Ochotona_princeps
ENSSHAG00000006635	CPSF6	53	52.113	ENSODEG00000002610	CPSF7	68	48.333	Octodon_degus
ENSSHAG00000006635	CPSF6	78	80.153	ENSODEG00000007109	-	66	78.417	Octodon_degus
ENSSHAG00000006635	CPSF6	73	97.475	ENSODEG00000004418	-	79	97.475	Octodon_degus
ENSSHAG00000006635	CPSF6	94	77.668	ENSOANG00000005944	CPSF6	50	87.170	Ornithorhynchus_anatinus
ENSSHAG00000006635	CPSF6	99	38.698	ENSOCUG00000024726	CPSF7	68	48.023	Oryctolagus_cuniculus
ENSSHAG00000006635	CPSF6	94	86.372	ENSOCUG00000013505	CPSF6	51	79.139	Oryctolagus_cuniculus
ENSSHAG00000006635	CPSF6	75	34.177	ENSORLG00000006495	CPSF7	59	41.007	Oryzias_latipes
ENSSHAG00000006635	CPSF6	74	34.322	ENSORLG00020012657	CPSF7	61	39.073	Oryzias_latipes_hni
ENSSHAG00000006635	CPSF6	70	32.857	ENSOMEG00000000539	CPSF7	64	35.673	Oryzias_melastigma
ENSSHAG00000006635	CPSF6	63	48.731	ENSOGAG00000027958	CPSF7	63	48.588	Otolemur_garnettii
ENSSHAG00000006635	CPSF6	99	94.786	ENSOGAG00000031988	CPSF6	100	94.786	Otolemur_garnettii
ENSSHAG00000006635	CPSF6	63	48.731	ENSOARG00000012937	CPSF7	61	48.023	Ovis_aries
ENSSHAG00000006635	CPSF6	64	48.223	ENSPPAG00000028232	CPSF7	70	48.023	Pan_paniscus
ENSSHAG00000006635	CPSF6	63	48.731	ENSPPRG00000008538	CPSF7	68	48.588	Panthera_pardus
ENSSHAG00000006635	CPSF6	94	94.862	ENSPPRG00000021620	CPSF6	51	78.808	Panthera_pardus
ENSSHAG00000006635	CPSF6	63	48.731	ENSPTIG00000021699	CPSF7	68	48.588	Panthera_tigris_altaica
ENSSHAG00000006635	CPSF6	94	95.059	ENSPTRG00000005205	CPSF6	51	79.139	Pan_troglodytes
ENSSHAG00000006635	CPSF6	64	48.223	ENSPTRG00000003742	CPSF7	70	48.023	Pan_troglodytes
ENSSHAG00000006635	CPSF6	94	95.059	ENSPANG00000011641	CPSF6	90	87.154	Papio_anubis
ENSSHAG00000006635	CPSF6	64	48.223	ENSPANG00000006037	CPSF7	69	48.023	Papio_anubis
ENSSHAG00000006635	CPSF6	52	48.438	ENSPKIG00000018054	CPSF7	64	41.818	Paramormyrops_kingsleyae
ENSSHAG00000006635	CPSF6	67	48.731	ENSPEMG00000012648	Cpsf7	73	48.588	Peromyscus_maniculatus_bairdii
ENSSHAG00000006635	CPSF6	99	96.276	ENSPCIG00000019063	CPSF6	97	96.276	Phascolarctos_cinereus
ENSSHAG00000006635	CPSF6	63	47.236	ENSPCIG00000002551	CPSF7	79	50.270	Phascolarctos_cinereus
ENSSHAG00000006635	CPSF6	63	48.223	ENSPPYG00000003188	CPSF7	68	48.023	Pongo_abelii
ENSSHAG00000006635	CPSF6	94	86.372	ENSPCAG00000011574	CPSF6	51	79.139	Procavia_capensis
ENSSHAG00000006635	CPSF6	94	94.862	ENSPCOG00000024384	CPSF6	51	79.139	Propithecus_coquereli
ENSSHAG00000006635	CPSF6	63	48.731	ENSPCOG00000011976	CPSF7	68	48.588	Propithecus_coquereli
ENSSHAG00000006635	CPSF6	63	48.731	ENSPVAG00000010675	CPSF7	68	48.588	Pteropus_vampyrus
ENSSHAG00000006635	CPSF6	53	44.218	ENSPNAG00000015073	CPSF7	68	41.765	Pygocentrus_nattereri
ENSSHAG00000006635	CPSF6	67	48.223	ENSRNOG00000020668	Cpsf7	73	48.276	Rattus_norvegicus
ENSSHAG00000006635	CPSF6	75	45.652	ENSRBIG00000031429	CPSF7	86	47.458	Rhinopithecus_bieti
ENSSHAG00000006635	CPSF6	94	94.862	ENSRBIG00000042827	CPSF6	51	79.139	Rhinopithecus_bieti
ENSSHAG00000006635	CPSF6	63	48.223	ENSRROG00000045009	CPSF7	68	48.023	Rhinopithecus_roxellana
ENSSHAG00000006635	CPSF6	94	94.862	ENSRROG00000042758	CPSF6	51	79.139	Rhinopithecus_roxellana
ENSSHAG00000006635	CPSF6	78	96.774	ENSSBOG00000010652	CPSF6	94	95.137	Saimiri_boliviensis_boliviensis
ENSSHAG00000006635	CPSF6	63	48.223	ENSSBOG00000018431	CPSF7	68	48.023	Saimiri_boliviensis_boliviensis
ENSSHAG00000006635	CPSF6	71	41.935	ENSSFOG00015010288	cpsf7	73	40.116	Scleropages_formosus
ENSSHAG00000006635	CPSF6	94	79.568	ENSSFOG00015015803	CPSF6	91	77.559	Scleropages_formosus
ENSSHAG00000006635	CPSF6	94	75.835	ENSSFOG00015001688	CPSF6	79	78.346	Scleropages_formosus
ENSSHAG00000006635	CPSF6	85	98.469	ENSSARG00000006743	CPSF6	76	98.469	Sorex_araneus
ENSSHAG00000006635	CPSF6	54	58.088	ENSSPUG00000019344	CPSF7	69	49.425	Sphenodon_punctatus
ENSSHAG00000006635	CPSF6	94	95.059	ENSSSCG00000038031	CPSF6	94	83.922	Sus_scrofa
ENSSHAG00000006635	CPSF6	75	46.196	ENSSSCG00000013083	CPSF7	79	48.023	Sus_scrofa
ENSSHAG00000006635	CPSF6	62	50.262	ENSTGUG00000006513	CPSF7	71	52.632	Taeniopygia_guttata
ENSSHAG00000006635	CPSF6	63	48.223	ENSTTRG00000011085	CPSF7	70	48.588	Tursiops_truncatus
ENSSHAG00000006635	CPSF6	63	48.731	ENSUAMG00000017809	CPSF7	68	48.588	Ursus_americanus
ENSSHAG00000006635	CPSF6	66	48.731	ENSUMAG00000011825	CPSF7	73	48.588	Ursus_maritimus
ENSSHAG00000006635	CPSF6	75	46.196	ENSVVUG00000004939	CPSF7	79	48.023	Vulpes_vulpes