EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000006841 (Gene tree)
Gene ID: -
Gene Symbol: SF1
Alias: ZCCHC25|ZFM1|ZNF162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 16710 bases
Position: chrGL864914.1:262673-279382
Accession: 12950
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000007884	KH_1	PF00013.29	1.6e-07	1	1
ENSSHAP00000007884	zf-CCHC	PF00098.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000007947	SF1-201	1653	-	ENSSHAP00000007884	538 (aa)	-	G3VXH9

Gene Model

Click here to download ENSSHAG00000006841's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000006841's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000006841	SF1	70	82.984	ENSAPOG00000012341	sf1	72	71.053	Acanthochromis_polyacanthus
ENSSHAG00000006841	SF1	74	94.789	ENSAMEG00000017828	SF1	62	93.548	Ailuropoda_melanoleuca
ENSSHAG00000006841	SF1	69	83.558	ENSACIG00000016514	sf1	73	71.368	Amphilophus_citrinellus
ENSSHAG00000006841	SF1	70	82.940	ENSAOCG00000010934	sf1	72	70.791	Amphiprion_ocellaris
ENSSHAG00000006841	SF1	70	82.940	ENSAPEG00000009498	sf1	72	70.791	Amphiprion_percula
ENSSHAG00000006841	SF1	68	83.646	ENSATEG00000001894	sf1	71	71.281	Anabas_testudineus
ENSSHAG00000006841	SF1	77	91.232	ENSANAG00000026664	-	96	91.707	Aotus_nancymaae
ENSSHAG00000006841	SF1	73	83.250	ENSANAG00000022607	-	76	85.893	Aotus_nancymaae
ENSSHAG00000006841	SF1	68	85.714	ENSACLG00000007633	sf1	60	82.609	Astatotilapia_calliptera
ENSSHAG00000006841	SF1	71	86.684	ENSAMXG00000003630	sf1	63	74.580	Astyanax_mexicanus
ENSSHAG00000006841	SF1	75	93.171	ENSBTAG00000001035	SF1	67	91.951	Bos_taurus
ENSSHAG00000006841	SF1	75	93.171	ENSCJAG00000002780	SF1	63	91.951	Callithrix_jacchus
ENSSHAG00000006841	SF1	75	93.171	ENSCAFG00000014239	SF1	63	91.951	Canis_familiaris
ENSSHAG00000006841	SF1	75	93.171	ENSCAFG00020014381	SF1	63	91.951	Canis_lupus_dingo
ENSSHAG00000006841	SF1	75	93.171	ENSCHIG00000025867	SF1	74	91.951	Capra_hircus
ENSSHAG00000006841	SF1	54	96.564	ENSTSYG00000033618	SF1	85	96.564	Carlito_syrichta
ENSSHAG00000006841	SF1	73	94.750	ENSCAPG00000010762	SF1	71	93.500	Cavia_aperea
ENSSHAG00000006841	SF1	74	94.541	ENSCPOG00000012290	SF1	74	93.500	Cavia_porcellus
ENSSHAG00000006841	SF1	75	82.134	ENSCCAG00000023781	-	78	80.000	Cebus_capucinus
ENSSHAG00000006841	SF1	77	91.469	ENSCCAG00000037881	SF1	96	91.951	Cebus_capucinus
ENSSHAG00000006841	SF1	75	93.171	ENSCATG00000011564	SF1	90	91.906	Cercocebus_atys
ENSSHAG00000006841	SF1	75	93.171	ENSCSAG00000007258	SF1	74	91.951	Chlorocebus_sabaeus
ENSSHAG00000006841	SF1	70	87.958	ENSCHOG00000006008	SF1	71	86.649	Choloepus_hoffmanni
ENSSHAG00000006841	SF1	58	67.412	ENSCING00000005564	-	63	67.302	Ciona_intestinalis
ENSSHAG00000006841	SF1	86	55.054	ENSCSAVG00000009055	-	60	69.841	Ciona_savignyi
ENSSHAG00000006841	SF1	75	93.171	ENSCANG00000042201	SF1	91	91.906	Colobus_angolensis_palliatus
ENSSHAG00000006841	SF1	75	92.927	ENSCGRG00001003677	Sf1	71	91.707	Cricetulus_griseus_chok1gshd
ENSSHAG00000006841	SF1	73	94.500	ENSCGRG00000001708	Sf1	73	93.250	Cricetulus_griseus_crigri
ENSSHAG00000006841	SF1	73	81.000	ENSCSEG00000014375	sf1	56	79.699	Cynoglossus_semilaevis
ENSSHAG00000006841	SF1	70	83.727	ENSCVAG00000001670	sf1	75	71.026	Cyprinodon_variegatus
ENSSHAG00000006841	SF1	72	83.679	ENSDARG00000008188	sf1	80	77.106	Danio_rerio
ENSSHAG00000006841	SF1	75	93.415	ENSDNOG00000001282	SF1	74	92.195	Dasypus_novemcinctus
ENSSHAG00000006841	SF1	75	93.171	ENSDORG00000016334	Sf1	62	93.532	Dipodomys_ordii
ENSSHAG00000006841	SF1	77	82.898	ENSETEG00000012830	SF1	58	82.898	Echinops_telfairi
ENSSHAG00000006841	SF1	75	92.683	ENSEASG00005018272	SF1	74	91.463	Equus_asinus_asinus
ENSSHAG00000006841	SF1	75	92.927	ENSECAG00000024544	SF1	74	91.707	Equus_caballus
ENSSHAG00000006841	SF1	65	94.118	ENSEEUG00000001058	SF1	90	92.717	Erinaceus_europaeus
ENSSHAG00000006841	SF1	69	83.820	ENSELUG00000013225	sf1	54	80.685	Esox_lucius
ENSSHAG00000006841	SF1	75	93.171	ENSFCAG00000012231	SF1	63	91.951	Felis_catus
ENSSHAG00000006841	SF1	73	94.750	ENSFDAG00000009833	SF1	71	93.500	Fukomys_damarensis
ENSSHAG00000006841	SF1	70	82.199	ENSFHEG00000022656	sf1	72	70.816	Fundulus_heteroclitus
ENSSHAG00000006841	SF1	62	85.841	ENSGMOG00000007469	sf1	61	86.228	Gadus_morhua
ENSSHAG00000006841	SF1	68	85.215	ENSGAFG00000019284	sf1	60	90.252	Gambusia_affinis
ENSSHAG00000006841	SF1	71	80.103	ENSGACG00000000826	sf1	82	71.698	Gasterosteus_aculeatus
ENSSHAG00000006841	SF1	68	84.718	ENSHBUG00000011598	sf1	72	71.717	Haplochromis_burtoni
ENSSHAG00000006841	SF1	75	93.171	ENSHGLG00000009541	SF1	71	91.951	Heterocephalus_glaber_female
ENSSHAG00000006841	SF1	69	86.992	ENSHGLG00100008076	-	74	86.450	Heterocephalus_glaber_male
ENSSHAG00000006841	SF1	73	94.750	ENSHGLG00100013879	-	71	93.500	Heterocephalus_glaber_male
ENSSHAG00000006841	SF1	75	80.282	ENSHGLG00100008255	-	83	75.352	Heterocephalus_glaber_male
ENSSHAG00000006841	SF1	72	81.026	ENSHCOG00000011388	sf1	70	69.835	Hippocampus_comes
ENSSHAG00000006841	SF1	73	94.750	ENSSTOG00000009790	-	63	93.500	Ictidomys_tridecemlineatus
ENSSHAG00000006841	SF1	68	84.533	ENSSTOG00000024353	-	67	83.200	Ictidomys_tridecemlineatus
ENSSHAG00000006841	SF1	75	93.415	ENSJJAG00000011788	Sf1	63	92.195	Jaculus_jaculus
ENSSHAG00000006841	SF1	71	83.420	ENSKMAG00000005854	sf1	75	71.255	Kryptolebias_marmoratus
ENSSHAG00000006841	SF1	69	83.421	ENSLBEG00000019836	sf1	70	75.385	Labrus_bergylta
ENSSHAG00000006841	SF1	75	80.846	ENSLACG00000018493	SF1	84	74.565	Latimeria_chalumnae
ENSSHAG00000006841	SF1	69	87.297	ENSLOCG00000002130	sf1	57	87.193	Lepisosteus_oculatus
ENSSHAG00000006841	SF1	75	93.659	ENSLAFG00000007201	SF1	69	93.659	Loxodonta_africana
ENSSHAG00000006841	SF1	75	93.171	ENSMFAG00000033122	SF1	90	91.906	Macaca_fascicularis
ENSSHAG00000006841	SF1	75	93.171	ENSMMUG00000022606	SF1	97	94.763	Macaca_mulatta
ENSSHAG00000006841	SF1	75	93.171	ENSMNEG00000037901	SF1	90	91.906	Macaca_nemestrina
ENSSHAG00000006841	SF1	75	93.187	ENSMLEG00000040706	SF1	90	92.632	Mandrillus_leucophaeus
ENSSHAG00000006841	SF1	68	84.225	ENSMAMG00000001780	sf1	70	71.134	Mastacembelus_armatus
ENSSHAG00000006841	SF1	68	84.987	ENSMZEG00005009196	sf1	72	71.717	Maylandia_zebra
ENSSHAG00000006841	SF1	75	92.927	ENSMAUG00000014064	Sf1	71	91.707	Mesocricetus_auratus
ENSSHAG00000006841	SF1	77	91.253	ENSMICG00000001202	SF1	96	91.727	Microcebus_murinus
ENSSHAG00000006841	SF1	75	92.683	ENSMOCG00000022038	Sf1	71	91.463	Microtus_ochrogaster
ENSSHAG00000006841	SF1	68	82.385	ENSMMOG00000020474	sf1	58	78.734	Mola_mola
ENSSHAG00000006841	SF1	73	96.259	ENSMODG00000029407	SF1	86	95.012	Monodelphis_domestica
ENSSHAG00000006841	SF1	69	82.749	ENSMALG00000020521	sf1	82	70.143	Monopterus_albus
ENSSHAG00000006841	SF1	75	92.927	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSSHAG00000006841	SF1	75	92.927	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSSHAG00000006841	SF1	75	92.927	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSSHAG00000006841	SF1	75	92.927	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSSHAG00000006841	SF1	75	92.439	ENSMPUG00000012684	SF1	63	92.195	Mustela_putorius_furo
ENSSHAG00000006841	SF1	79	86.574	ENSMLUG00000029800	-	70	88.049	Myotis_lucifugus
ENSSHAG00000006841	SF1	74	93.548	ENSMLUG00000015217	-	62	93.300	Myotis_lucifugus
ENSSHAG00000006841	SF1	75	93.415	ENSNGAG00000005550	Sf1	71	92.195	Nannospalax_galili
ENSSHAG00000006841	SF1	68	85.095	ENSNBRG00000017606	sf1	73	69.691	Neolamprologus_brichardi
ENSSHAG00000006841	SF1	75	93.171	ENSNLEG00000005236	-	91	91.906	Nomascus_leucogenys
ENSSHAG00000006841	SF1	72	95.685	ENSMEUG00000013424	SF1	74	94.416	Notamacropus_eugenii
ENSSHAG00000006841	SF1	65	94.118	ENSOPRG00000005008	SF1	71	92.717	Ochotona_princeps
ENSSHAG00000006841	SF1	75	90.488	ENSODEG00000006102	-	64	89.268	Octodon_degus
ENSSHAG00000006841	SF1	68	84.718	ENSONIG00000015728	sf1	72	71.515	Oreochromis_niloticus
ENSSHAG00000006841	SF1	61	82.090	ENSOANG00000002909	SF1	81	79.701	Ornithorhynchus_anatinus
ENSSHAG00000006841	SF1	74	94.789	ENSOCUG00000026486	SF1	63	93.548	Oryctolagus_cuniculus
ENSSHAG00000006841	SF1	72	81.425	ENSORLG00000011853	sf1	59	78.624	Oryzias_latipes
ENSSHAG00000006841	SF1	72	81.425	ENSORLG00020011834	sf1	59	78.378	Oryzias_latipes_hni
ENSSHAG00000006841	SF1	71	81.250	ENSORLG00015012855	sf1	59	78.133	Oryzias_latipes_hsok
ENSSHAG00000006841	SF1	71	82.338	ENSOMEG00000005210	sf1	72	70.791	Oryzias_melastigma
ENSSHAG00000006841	SF1	75	93.171	ENSOGAG00000016196	SF1	64	91.951	Otolemur_garnettii
ENSSHAG00000006841	SF1	75	93.171	ENSOARG00000009166	SF1	71	91.951	Ovis_aries
ENSSHAG00000006841	SF1	76	92.771	ENSPPAG00000002799	-	95	93.300	Pan_paniscus
ENSSHAG00000006841	SF1	73	94.763	ENSPPRG00000013566	SF1	62	93.506	Panthera_pardus
ENSSHAG00000006841	SF1	74	94.541	ENSPTIG00000016141	SF1	72	93.300	Panthera_tigris_altaica
ENSSHAG00000006841	SF1	75	93.171	ENSPTRG00000003846	SF1	94	91.951	Pan_troglodytes
ENSSHAG00000006841	SF1	75	93.171	ENSPANG00000020754	SF1	90	91.906	Papio_anubis
ENSSHAG00000006841	SF1	61	78.107	ENSPKIG00000012116	sf1	86	75.000	Paramormyrops_kingsleyae
ENSSHAG00000006841	SF1	75	92.927	ENSPEMG00000010463	Sf1	71	91.707	Peromyscus_maniculatus_bairdii
ENSSHAG00000006841	SF1	74	96.030	ENSPCIG00000018173	SF1	66	93.415	Phascolarctos_cinereus
ENSSHAG00000006841	SF1	70	84.840	ENSPFOG00000013683	sf1	71	78.291	Poecilia_formosa
ENSSHAG00000006841	SF1	68	85.484	ENSPLAG00000018076	sf1	72	72.074	Poecilia_latipinna
ENSSHAG00000006841	SF1	68	85.484	ENSPMEG00000005726	sf1	74	72.279	Poecilia_mexicana
ENSSHAG00000006841	SF1	68	84.946	ENSPREG00000004155	sf1	70	71.869	Poecilia_reticulata
ENSSHAG00000006841	SF1	75	93.171	ENSPPYG00000003098	-	77	91.951	Pongo_abelii
ENSSHAG00000006841	SF1	73	93.516	ENSPCAG00000013631	SF1	59	93.267	Procavia_capensis
ENSSHAG00000006841	SF1	77	91.253	ENSPCOG00000027546	SF1	96	91.727	Propithecus_coquereli
ENSSHAG00000006841	SF1	73	95.012	ENSPVAG00000016938	SF1	60	93.766	Pteropus_vampyrus
ENSSHAG00000006841	SF1	68	84.987	ENSPNYG00000004673	sf1	70	72.577	Pundamilia_nyererei
ENSSHAG00000006841	SF1	69	87.601	ENSPNAG00000013072	sf1	71	74.423	Pygocentrus_nattereri
ENSSHAG00000006841	SF1	75	92.927	ENSRNOG00000021085	Sf1	69	89.112	Rattus_norvegicus
ENSSHAG00000006841	SF1	75	93.171	ENSRBIG00000042818	SF1	91	93.005	Rhinopithecus_bieti
ENSSHAG00000006841	SF1	81	88.764	ENSRROG00000045655	SF1	92	92.629	Rhinopithecus_roxellana
ENSSHAG00000006841	SF1	51	44.912	YLR116W	MSL5	60	44.637	Saccharomyces_cerevisiae
ENSSHAG00000006841	SF1	75	76.225	ENSSBOG00000022267	-	97	74.634	Saimiri_boliviensis_boliviensis
ENSSHAG00000006841	SF1	73	83.797	ENSSFOG00015021978	sf1	57	82.952	Scleropages_formosus
ENSSHAG00000006841	SF1	74	79.268	ENSSMAG00000007549	sf1	75	69.368	Scophthalmus_maximus
ENSSHAG00000006841	SF1	70	81.984	ENSSDUG00000003903	sf1	74	70.445	Seriola_dumerili
ENSSHAG00000006841	SF1	70	81.984	ENSSLDG00000013075	sf1	72	70.445	Seriola_lalandi_dorsalis
ENSSHAG00000006841	SF1	73	89.500	ENSSARG00000008180	SF1	76	88.250	Sorex_araneus
ENSSHAG00000006841	SF1	70	88.630	ENSSPUG00000012907	SF1	65	89.203	Sphenodon_punctatus
ENSSHAG00000006841	SF1	70	81.627	ENSSPAG00000019060	sf1	72	70.183	Stegastes_partitus
ENSSHAG00000006841	SF1	75	93.171	ENSSSCG00000013021	SF1	74	91.951	Sus_scrofa
ENSSHAG00000006841	SF1	73	70.244	ENSTNIG00000004820	sf1	78	67.542	Tetraodon_nigroviridis
ENSSHAG00000006841	SF1	77	85.036	ENSTBEG00000013133	SF1	61	85.036	Tupaia_belangeri
ENSSHAG00000006841	SF1	73	88.000	ENSTTRG00000008857	SF1	73	87.750	Tursiops_truncatus
ENSSHAG00000006841	SF1	54	92.784	ENSUAMG00000011977	SF1	55	88.235	Ursus_americanus
ENSSHAG00000006841	SF1	75	95.037	ENSUMAG00000007268	SF1	78	92.195	Ursus_maritimus
ENSSHAG00000006841	SF1	75	93.171	ENSVVUG00000028585	SF1	74	91.951	Vulpes_vulpes
ENSSHAG00000006841	SF1	78	80.806	ENSXETG00000008434	sf1	56	94.688	Xenopus_tropicalis
ENSSHAG00000006841	SF1	67	85.753	ENSXCOG00000003704	sf1	73	80.720	Xiphophorus_couchianus
ENSSHAG00000006841	SF1	69	84.987	ENSXMAG00000007822	sf1	73	71.869	Xiphophorus_maculatus