EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000006937 (Gene tree)
Gene ID: 100929586
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 19318 bases
Position: chrGL856874.1:270874-290191
Accession: 12651
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000007995	tRNA-synt_1g	PF09334.11	1.6e-11	1	1
ENSSHAP00000007995	Anticodon_1	PF08264.13	1.2e-36	1	1
ENSSHAP00000007995	tRNA-synt_1	PF00133.22	1.1e-204	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000008059	VARS-201	3943	-	ENSSHAP00000007995	1268 (aa)	-	G3VXU0

Gene Model

Click here to download ENSSHAG00000006937's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000006937's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000006937	VARS	81	50.193	ENSSHAG00000009307	VARS2	92	51.454

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000006937	VARS	100	81.540	ENSG00000204394	VARS	100	81.304	Homo_sapiens
ENSSHAG00000006937	VARS	98	64.211	ENSAPOG00000020691	vars	99	62.922	Acanthochromis_polyacanthus
ENSSHAG00000006937	VARS	98	64.211	ENSAPOG00000020921	vars	99	62.922	Acanthochromis_polyacanthus
ENSSHAG00000006937	VARS	100	81.162	ENSAMEG00000006417	VARS	100	80.926	Ailuropoda_melanoleuca
ENSSHAG00000006937	VARS	100	65.520	ENSACIG00000013752	vars	100	65.285	Amphilophus_citrinellus
ENSSHAG00000006937	VARS	100	63.942	ENSAOCG00000002447	vars	100	63.608	Amphiprion_ocellaris
ENSSHAG00000006937	VARS	100	63.942	ENSAPEG00000010638	vars	99	64.396	Amphiprion_percula
ENSSHAG00000006937	VARS	100	63.887	ENSATEG00000020219	vars	100	62.839	Anabas_testudineus
ENSSHAG00000006937	VARS	90	65.659	ENSACAG00000029133	-	99	68.054	Anolis_carolinensis
ENSSHAG00000006937	VARS	100	82.011	ENSANAG00000015453	VARS	100	81.775	Aotus_nancymaae
ENSSHAG00000006937	VARS	100	64.313	ENSACLG00000025699	vars	97	64.280	Astatotilapia_calliptera
ENSSHAG00000006937	VARS	94	65.008	ENSAMXG00000017716	vars	86	69.972	Astyanax_mexicanus
ENSSHAG00000006937	VARS	100	82.325	ENSBTAG00000005631	VARS	100	82.090	Bos_taurus
ENSSHAG00000006937	VARS	100	81.775	ENSCJAG00000002604	VARS	100	81.540	Callithrix_jacchus
ENSSHAG00000006937	VARS	100	81.618	ENSCAFG00000000636	VARS	100	81.383	Canis_familiaris
ENSSHAG00000006937	VARS	94	81.978	ENSCAFG00020020790	VARS	96	81.727	Canis_lupus_dingo
ENSSHAG00000006937	VARS	100	82.325	ENSCHIG00000011008	VARS	100	82.090	Capra_hircus
ENSSHAG00000006937	VARS	100	81.461	ENSTSYG00000001567	VARS	100	81.225	Carlito_syrichta
ENSSHAG00000006937	VARS	90	84.811	ENSCAPG00000013736	VARS	98	84.811	Cavia_aperea
ENSSHAG00000006937	VARS	100	80.754	ENSCPOG00000000870	VARS	100	80.518	Cavia_porcellus
ENSSHAG00000006937	VARS	100	81.932	ENSCCAG00000035656	VARS	100	82.587	Cebus_capucinus
ENSSHAG00000006937	VARS	100	82.011	ENSCATG00000022394	VARS	100	81.775	Cercocebus_atys
ENSSHAG00000006937	VARS	88	82.723	ENSCLAG00000009470	VARS	92	82.723	Chinchilla_lanigera
ENSSHAG00000006937	VARS	100	82.011	ENSCSAG00000008784	VARS	100	81.775	Chlorocebus_sabaeus
ENSSHAG00000006937	VARS	77	74.230	ENSCPBG00000007943	VARS	96	74.230	Chrysemys_picta_bellii
ENSSHAG00000006937	VARS	100	82.011	ENSCANG00000033570	VARS	100	81.775	Colobus_angolensis_palliatus
ENSSHAG00000006937	VARS	100	80.676	ENSCGRG00001005686	Vars	100	80.440	Cricetulus_griseus_chok1gshd
ENSSHAG00000006937	VARS	91	78.704	ENSCGRG00000013352	Vars	77	78.704	Cricetulus_griseus_crigri
ENSSHAG00000006937	VARS	100	64.201	ENSCSEG00000019652	vars	100	64.044	Cynoglossus_semilaevis
ENSSHAG00000006937	VARS	100	64.692	ENSCVAG00000022398	vars	100	64.665	Cyprinodon_variegatus
ENSSHAG00000006937	VARS	100	64.176	ENSDARG00000044575	vars	100	64.065	Danio_rerio
ENSSHAG00000006937	VARS	82	85.550	ENSDORG00000016433	Vars	94	85.550	Dipodomys_ordii
ENSSHAG00000006937	VARS	68	82.098	ENSETEG00000003824	VARS	77	82.098	Echinops_telfairi
ENSSHAG00000006937	VARS	50	71.739	ENSEBUG00000007086	vars	84	70.855	Eptatretus_burgeri
ENSSHAG00000006937	VARS	57	62.912	ENSEBUG00000004637	vars	100	63.187	Eptatretus_burgeri
ENSSHAG00000006937	VARS	100	82.247	ENSEASG00005015673	VARS	100	82.011	Equus_asinus_asinus
ENSSHAG00000006937	VARS	100	81.554	ENSECAG00000014620	VARS	100	81.633	Equus_caballus
ENSSHAG00000006937	VARS	76	85.096	ENSEEUG00000004116	VARS	78	85.096	Erinaceus_europaeus
ENSSHAG00000006937	VARS	100	63.917	ENSELUG00000006550	vars	97	63.331	Esox_lucius
ENSSHAG00000006937	VARS	100	81.854	ENSFCAG00000004510	VARS	100	81.618	Felis_catus
ENSSHAG00000006937	VARS	81	85.120	ENSFDAG00000011401	VARS	99	85.120	Fukomys_damarensis
ENSSHAG00000006937	VARS	100	65.000	ENSFHEG00000010672	vars	100	64.927	Fundulus_heteroclitus
ENSSHAG00000006937	VARS	90	66.695	ENSGMOG00000014908	vars	94	66.981	Gadus_morhua
ENSSHAG00000006937	VARS	100	65.054	ENSGAFG00000021630	vars	100	65.023	Gambusia_affinis
ENSSHAG00000006937	VARS	90	67.442	ENSGACG00000009601	vars	95	67.530	Gasterosteus_aculeatus
ENSSHAG00000006937	VARS	50	56.508	ENSGAGG00000006508	-	91	59.091	Gopherus_agassizii
ENSSHAG00000006937	VARS	100	81.932	ENSGGOG00000011364	VARS	100	81.697	Gorilla_gorilla
ENSSHAG00000006937	VARS	100	64.543	ENSHBUG00000017151	vars	97	64.434	Haplochromis_burtoni
ENSSHAG00000006937	VARS	100	80.204	ENSHGLG00000011646	VARS	100	79.969	Heterocephalus_glaber_female
ENSSHAG00000006937	VARS	91	75.740	ENSHGLG00100018062	VARS	98	75.740	Heterocephalus_glaber_male
ENSSHAG00000006937	VARS	99	62.491	ENSHCOG00000012198	vars	99	63.234	Hippocampus_comes
ENSSHAG00000006937	VARS	100	64.779	ENSIPUG00000005218	vars	100	64.441	Ictalurus_punctatus
ENSSHAG00000006937	VARS	100	82.182	ENSSTOG00000013112	VARS	100	81.947	Ictidomys_tridecemlineatus
ENSSHAG00000006937	VARS	100	63.328	ENSJJAG00000015343	-	94	67.703	Jaculus_jaculus
ENSSHAG00000006937	VARS	100	79.419	ENSJJAG00000019749	-	100	79.183	Jaculus_jaculus
ENSSHAG00000006937	VARS	100	64.996	ENSKMAG00000009455	vars	100	64.498	Kryptolebias_marmoratus
ENSSHAG00000006937	VARS	100	63.594	ENSLBEG00000010341	vars	100	63.273	Labrus_bergylta
ENSSHAG00000006937	VARS	94	59.508	ENSLACG00000015232	VARS	99	61.721	Latimeria_chalumnae
ENSSHAG00000006937	VARS	100	65.109	ENSLOCG00000004240	vars	100	64.472	Lepisosteus_oculatus
ENSSHAG00000006937	VARS	100	80.990	ENSLAFG00000023090	VARS	100	81.147	Loxodonta_africana
ENSSHAG00000006937	VARS	100	81.932	ENSMFAG00000001032	VARS	100	81.697	Macaca_fascicularis
ENSSHAG00000006937	VARS	100	81.932	ENSMMUG00000006828	VARS	100	81.697	Macaca_mulatta
ENSSHAG00000006937	VARS	100	81.932	ENSMNEG00000042072	VARS	100	81.697	Macaca_nemestrina
ENSSHAG00000006937	VARS	100	82.011	ENSMLEG00000039307	VARS	100	81.775	Mandrillus_leucophaeus
ENSSHAG00000006937	VARS	100	63.595	ENSMAMG00000003949	vars	100	64.434	Mastacembelus_armatus
ENSSHAG00000006937	VARS	100	64.390	ENSMZEG00005018327	vars	100	63.522	Maylandia_zebra
ENSSHAG00000006937	VARS	100	81.068	ENSMAUG00000006715	Vars	100	80.833	Mesocricetus_auratus
ENSSHAG00000006937	VARS	100	81.854	ENSMICG00000003548	VARS	100	82.090	Microcebus_murinus
ENSSHAG00000006937	VARS	100	78.005	ENSMOCG00000015404	Vars	100	78.275	Microtus_ochrogaster
ENSSHAG00000006937	VARS	100	64.202	ENSMMOG00000015801	vars	100	63.349	Mola_mola
ENSSHAG00000006937	VARS	100	90.181	ENSMODG00000015204	-	100	90.102	Monodelphis_domestica
ENSSHAG00000006937	VARS	99	63.227	ENSMALG00000022532	vars	99	63.022	Monopterus_albus
ENSSHAG00000006937	VARS	100	80.863	MGP_CAROLIEiJ_G0021491	Vars	100	81.020	Mus_caroli
ENSSHAG00000006937	VARS	100	80.941	ENSMUSG00000007029	Vars	100	81.098	Mus_musculus
ENSSHAG00000006937	VARS	100	80.706	MGP_PahariEiJ_G0020486	Vars	100	80.863	Mus_pahari
ENSSHAG00000006937	VARS	100	81.020	MGP_SPRETEiJ_G0022396	Vars	100	81.176	Mus_spretus
ENSSHAG00000006937	VARS	100	81.647	ENSMPUG00000010821	VARS	100	81.412	Mustela_putorius_furo
ENSSHAG00000006937	VARS	78	80.542	ENSMLUG00000013126	VARS	100	80.642	Myotis_lucifugus
ENSSHAG00000006937	VARS	100	80.440	ENSNGAG00000012151	Vars	100	80.204	Nannospalax_galili
ENSSHAG00000006937	VARS	100	64.160	ENSNBRG00000020520	vars	100	64.049	Neolamprologus_brichardi
ENSSHAG00000006937	VARS	100	81.618	ENSNLEG00000006351	VARS	100	81.383	Nomascus_leucogenys
ENSSHAG00000006937	VARS	100	86.960	ENSMEUG00000011378	VARS	100	86.881	Notamacropus_eugenii
ENSSHAG00000006937	VARS	100	81.618	ENSOPRG00000003607	VARS	100	81.540	Ochotona_princeps
ENSSHAG00000006937	VARS	100	80.990	ENSODEG00000017681	VARS	100	80.911	Octodon_degus
ENSSHAG00000006937	VARS	100	65.015	ENSONIG00000013064	vars	99	69.211	Oreochromis_niloticus
ENSSHAG00000006937	VARS	77	73.974	ENSOANG00000005400	VARS	98	73.380	Ornithorhynchus_anatinus
ENSSHAG00000006937	VARS	100	80.204	ENSOCUG00000022463	VARS	100	79.969	Oryctolagus_cuniculus
ENSSHAG00000006937	VARS	100	64.134	ENSORLG00000013063	vars	100	64.297	Oryzias_latipes
ENSSHAG00000006937	VARS	100	64.996	ENSORLG00020003504	vars	100	64.362	Oryzias_latipes_hni
ENSSHAG00000006937	VARS	100	64.769	ENSORLG00015009001	vars	100	64.563	Oryzias_latipes_hsok
ENSSHAG00000006937	VARS	100	64.583	ENSOMEG00000015016	vars	100	64.411	Oryzias_melastigma
ENSSHAG00000006937	VARS	100	81.225	ENSOGAG00000007515	VARS	100	81.147	Otolemur_garnettii
ENSSHAG00000006937	VARS	100	81.932	ENSPPAG00000034012	VARS	100	81.697	Pan_paniscus
ENSSHAG00000006937	VARS	100	82.090	ENSPPRG00000014855	VARS	100	81.854	Panthera_pardus
ENSSHAG00000006937	VARS	82	86.500	ENSPTIG00000010462	VARS	91	86.207	Panthera_tigris_altaica
ENSSHAG00000006937	VARS	100	81.854	ENSPTRG00000017985	VARS	100	81.618	Pan_troglodytes
ENSSHAG00000006937	VARS	100	80.219	ENSPANG00000014565	VARS	100	79.984	Papio_anubis
ENSSHAG00000006937	VARS	100	62.977	ENSPKIG00000016304	vars	100	62.844	Paramormyrops_kingsleyae
ENSSHAG00000006937	VARS	100	64.425	ENSPMGG00000023909	vars	100	64.336	Periophthalmus_magnuspinnatus
ENSSHAG00000006937	VARS	100	81.383	ENSPEMG00000006639	Vars	100	81.147	Peromyscus_maniculatus_bairdii
ENSSHAG00000006937	VARS	100	89.725	ENSPCIG00000018553	VARS	100	89.647	Phascolarctos_cinereus
ENSSHAG00000006937	VARS	100	64.823	ENSPFOG00000015690	vars	100	64.792	Poecilia_formosa
ENSSHAG00000006937	VARS	100	65.861	ENSPLAG00000009590	vars	100	65.472	Poecilia_latipinna
ENSSHAG00000006937	VARS	100	64.823	ENSPMEG00000004708	vars	100	64.792	Poecilia_mexicana
ENSSHAG00000006937	VARS	100	63.023	ENSPREG00000013264	vars	100	62.394	Poecilia_reticulata
ENSSHAG00000006937	VARS	100	80.204	ENSPPYG00000016460	VARS	100	79.969	Pongo_abelii
ENSSHAG00000006937	VARS	85	83.453	ENSPCAG00000013565	VARS	85	83.453	Procavia_capensis
ENSSHAG00000006937	VARS	100	81.476	ENSPCOG00000010942	VARS	100	81.554	Propithecus_coquereli
ENSSHAG00000006937	VARS	100	78.555	ENSPVAG00000012403	VARS	100	78.319	Pteropus_vampyrus
ENSSHAG00000006937	VARS	100	64.467	ENSPNYG00000022511	vars	100	64.357	Pundamilia_nyererei
ENSSHAG00000006937	VARS	100	65.123	ENSPNAG00000020962	vars	100	64.479	Pygocentrus_nattereri
ENSSHAG00000006937	VARS	100	81.333	ENSRNOG00000000867	Vars	100	81.098	Rattus_norvegicus
ENSSHAG00000006937	VARS	100	81.932	ENSRBIG00000041669	VARS	100	81.697	Rhinopithecus_bieti
ENSSHAG00000006937	VARS	100	81.932	ENSRROG00000045490	VARS	100	81.697	Rhinopithecus_roxellana
ENSSHAG00000006937	VARS	100	81.540	ENSSBOG00000035402	VARS	100	81.304	Saimiri_boliviensis_boliviensis
ENSSHAG00000006937	VARS	100	63.978	ENSSFOG00015014272	vars	97	72.312	Scleropages_formosus
ENSSHAG00000006937	VARS	100	63.158	ENSSMAG00000009596	vars	99	62.766	Scophthalmus_maximus
ENSSHAG00000006937	VARS	100	64.089	ENSSDUG00000014177	vars	100	63.333	Seriola_dumerili
ENSSHAG00000006937	VARS	100	64.012	ENSSLDG00000025316	vars	100	63.333	Seriola_lalandi_dorsalis
ENSSHAG00000006937	VARS	100	64.049	ENSSPAG00000017068	vars	100	63.812	Stegastes_partitus
ENSSHAG00000006937	VARS	100	81.240	ENSSSCG00000038950	VARS	100	81.319	Sus_scrofa
ENSSHAG00000006937	VARS	82	62.879	ENSTRUG00000012307	vars	98	61.847	Takifugu_rubripes
ENSSHAG00000006937	VARS	100	64.336	ENSTNIG00000008011	vars	100	63.913	Tetraodon_nigroviridis
ENSSHAG00000006937	VARS	100	73.998	ENSTTRG00000014128	VARS	100	73.763	Tursiops_truncatus
ENSSHAG00000006937	VARS	100	78.532	ENSUAMG00000010424	VARS	100	78.298	Ursus_americanus
ENSSHAG00000006937	VARS	100	71.892	ENSUMAG00000013486	VARS	98	78.611	Ursus_maritimus
ENSSHAG00000006937	VARS	100	81.476	ENSVVUG00000021323	VARS	100	81.083	Vulpes_vulpes
ENSSHAG00000006937	VARS	89	64.665	ENSXETG00000024076	vars	91	64.665	Xenopus_tropicalis
ENSSHAG00000006937	VARS	100	65.082	ENSXCOG00000019172	vars	100	64.926	Xiphophorus_couchianus
ENSSHAG00000006937	VARS	100	64.823	ENSXMAG00000010927	vars	100	64.792	Xiphophorus_maculatus