EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000006993 (Gene tree)
Gene ID: 100918854
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 6344 bases
Position: chrGL834778.1:275902-282245
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000008060	HVSL	PF09749.9	9e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000008124	USB1-201	890	-	ENSSHAP00000008060	253 (aa)	-	G3VY05

Gene Model

Click here to download ENSSHAG00000006993's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000006993's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000006993	USB1	94	71.308	ENSG00000103005	USB1	100	72.897	Homo_sapiens
ENSSHAG00000006993	USB1	90	52.863	ENSAPOG00000011942	usb1	77	52.535	Acanthochromis_polyacanthus
ENSSHAG00000006993	USB1	94	70.168	ENSAMEG00000017205	USB1	81	71.689	Ailuropoda_melanoleuca
ENSSHAG00000006993	USB1	91	51.082	ENSACIG00000012234	usb1	79	51.869	Amphilophus_citrinellus
ENSSHAG00000006993	USB1	90	51.542	ENSAOCG00000014831	usb1	77	51.152	Amphiprion_ocellaris
ENSSHAG00000006993	USB1	90	51.982	ENSAPEG00000000296	usb1	77	51.613	Amphiprion_percula
ENSSHAG00000006993	USB1	99	49.206	ENSATEG00000009348	usb1	77	50.459	Anabas_testudineus
ENSSHAG00000006993	USB1	89	65.044	ENSAPLG00000002756	USB1	98	65.158	Anas_platyrhynchos
ENSSHAG00000006993	USB1	90	62.445	ENSACAG00000015481	USB1	97	62.443	Anolis_carolinensis
ENSSHAG00000006993	USB1	94	70.042	ENSANAG00000035640	USB1	83	72.603	Aotus_nancymaae
ENSSHAG00000006993	USB1	89	51.786	ENSACLG00000020586	usb1	77	51.152	Astatotilapia_calliptera
ENSSHAG00000006993	USB1	89	48.444	ENSAMXG00000040146	usb1	72	47.926	Astyanax_mexicanus
ENSSHAG00000006993	USB1	100	67.589	ENSBTAG00000015758	USB1	83	71.689	Bos_taurus
ENSSHAG00000006993	USB1	94	70.042	ENSCJAG00000011733	USB1	83	72.603	Callithrix_jacchus
ENSSHAG00000006993	USB1	94	70.886	ENSCAFG00000008556	USB1	58	72.936	Canis_familiaris
ENSSHAG00000006993	USB1	99	67.323	ENSCAFG00020009263	USB1	82	72.936	Canis_lupus_dingo
ENSSHAG00000006993	USB1	100	66.798	ENSCHIG00000024290	USB1	83	70.776	Capra_hircus
ENSSHAG00000006993	USB1	97	69.388	ENSTSYG00000006997	USB1	83	73.516	Carlito_syrichta
ENSSHAG00000006993	USB1	89	59.821	ENSCAPG00000009057	USB1	93	59.817	Cavia_aperea
ENSSHAG00000006993	USB1	96	69.136	ENSCPOG00000014325	USB1	82	73.516	Cavia_porcellus
ENSSHAG00000006993	USB1	94	69.620	ENSCCAG00000022132	USB1	83	72.146	Cebus_capucinus
ENSSHAG00000006993	USB1	96	70.902	ENSCATG00000032174	USB1	83	73.973	Cercocebus_atys
ENSSHAG00000006993	USB1	70	73.295	ENSCLAG00000007363	USB1	100	73.295	Chinchilla_lanigera
ENSSHAG00000006993	USB1	96	70.492	ENSCSAG00000004783	USB1	83	73.973	Chlorocebus_sabaeus
ENSSHAG00000006993	USB1	90	65.639	ENSCPBG00000026943	USB1	79	65.297	Chrysemys_picta_bellii
ENSSHAG00000006993	USB1	96	69.672	ENSCANG00000037135	USB1	83	73.516	Colobus_angolensis_palliatus
ENSSHAG00000006993	USB1	100	67.315	ENSCGRG00001011243	USB1	82	72.603	Cricetulus_griseus_chok1gshd
ENSSHAG00000006993	USB1	100	67.315	ENSCGRG00000013252	USB1	82	72.603	Cricetulus_griseus_crigri
ENSSHAG00000006993	USB1	94	49.167	ENSCSEG00000013881	usb1	79	50.000	Cynoglossus_semilaevis
ENSSHAG00000006993	USB1	89	49.123	ENSCVAG00000009252	usb1	95	48.649	Cyprinodon_variegatus
ENSSHAG00000006993	USB1	98	46.964	ENSDARG00000003841	usb1	79	48.858	Danio_rerio
ENSSHAG00000006993	USB1	94	68.201	ENSDORG00000001888	Usb1	83	69.863	Dipodomys_ordii
ENSSHAG00000006993	USB1	89	37.339	FBgn0037713	CG16790	82	37.900	Drosophila_melanogaster
ENSSHAG00000006993	USB1	99	56.299	ENSETEG00000019682	USB1	82	59.361	Echinops_telfairi
ENSSHAG00000006993	USB1	88	50.000	ENSEBUG00000005889	usb1	76	49.309	Eptatretus_burgeri
ENSSHAG00000006993	USB1	100	69.170	ENSEASG00005005484	USB1	83	73.516	Equus_asinus_asinus
ENSSHAG00000006993	USB1	100	69.565	ENSECAG00000019493	USB1	76	73.973	Equus_caballus
ENSSHAG00000006993	USB1	70	63.636	ENSEEUG00000000154	USB1	66	63.636	Erinaceus_europaeus
ENSSHAG00000006993	USB1	90	47.162	ENSELUG00000010974	usb1	80	46.575	Esox_lucius
ENSSHAG00000006993	USB1	99	67.600	ENSFCAG00000002693	USB1	82	72.146	Felis_catus
ENSSHAG00000006993	USB1	89	63.111	ENSFALG00000006876	USB1	80	64.151	Ficedula_albicollis
ENSSHAG00000006993	USB1	98	68.548	ENSFDAG00000010052	USB1	82	73.516	Fukomys_damarensis
ENSSHAG00000006993	USB1	76	52.062	ENSFHEG00000012334	usb1	73	52.717	Fundulus_heteroclitus
ENSSHAG00000006993	USB1	88	49.776	ENSGMOG00000004228	usb1	97	49.541	Gadus_morhua
ENSSHAG00000006993	USB1	88	64.286	ENSGALG00000035604	USB1	86	64.091	Gallus_gallus
ENSSHAG00000006993	USB1	98	49.194	ENSGAFG00000021890	usb1	78	51.376	Gambusia_affinis
ENSSHAG00000006993	USB1	89	49.107	ENSGACG00000003257	usb1	78	48.387	Gasterosteus_aculeatus
ENSSHAG00000006993	USB1	98	62.348	ENSGAGG00000022572	USB1	80	64.840	Gopherus_agassizii
ENSSHAG00000006993	USB1	94	70.464	ENSGGOG00000017147	USB1	83	72.603	Gorilla_gorilla
ENSSHAG00000006993	USB1	90	51.542	ENSHBUG00000009823	usb1	77	51.152	Haplochromis_burtoni
ENSSHAG00000006993	USB1	100	68.627	ENSHGLG00000016078	USB1	80	74.429	Heterocephalus_glaber_female
ENSSHAG00000006993	USB1	100	68.627	ENSHGLG00100005562	USB1	80	74.429	Heterocephalus_glaber_male
ENSSHAG00000006993	USB1	86	47.926	ENSHCOG00000015633	usb1	84	47.926	Hippocampus_comes
ENSSHAG00000006993	USB1	100	47.638	ENSIPUG00000008601	usb1	76	50.917	Ictalurus_punctatus
ENSSHAG00000006993	USB1	97	69.512	ENSSTOG00000007548	USB1	80	72.603	Ictidomys_tridecemlineatus
ENSSHAG00000006993	USB1	99	70.635	ENSJJAG00000021859	Usb1	82	74.886	Jaculus_jaculus
ENSSHAG00000006993	USB1	90	51.542	ENSKMAG00000007200	usb1	76	51.152	Kryptolebias_marmoratus
ENSSHAG00000006993	USB1	78	48.990	ENSLBEG00000008452	usb1	63	49.189	Labrus_bergylta
ENSSHAG00000006993	USB1	93	55.242	ENSLACG00000000105	USB1	70	59.901	Latimeria_chalumnae
ENSSHAG00000006993	USB1	93	51.837	ENSLOCG00000000465	usb1	77	52.752	Lepisosteus_oculatus
ENSSHAG00000006993	USB1	100	52.963	ENSLAFG00000002267	USB1	81	58.590	Loxodonta_africana
ENSSHAG00000006993	USB1	96	70.492	ENSMFAG00000003926	USB1	83	73.973	Macaca_fascicularis
ENSSHAG00000006993	USB1	96	70.492	ENSMMUG00000022669	USB1	83	73.973	Macaca_mulatta
ENSSHAG00000006993	USB1	96	70.082	ENSMNEG00000042487	USB1	83	73.516	Macaca_nemestrina
ENSSHAG00000006993	USB1	96	70.492	ENSMLEG00000028756	USB1	83	73.973	Mandrillus_leucophaeus
ENSSHAG00000006993	USB1	99	48.413	ENSMAMG00000015092	usb1	78	50.917	Mastacembelus_armatus
ENSSHAG00000006993	USB1	89	51.786	ENSMZEG00005010008	usb1	77	51.152	Maylandia_zebra
ENSSHAG00000006993	USB1	100	66.797	ENSMAUG00000007832	Usb1	82	71.233	Mesocricetus_auratus
ENSSHAG00000006993	USB1	91	70.563	ENSMICG00000004900	USB1	83	72.146	Microcebus_murinus
ENSSHAG00000006993	USB1	100	66.797	ENSMOCG00000022647	Usb1	82	71.233	Microtus_ochrogaster
ENSSHAG00000006993	USB1	89	50.000	ENSMMOG00000000490	usb1	84	49.770	Mola_mola
ENSSHAG00000006993	USB1	99	76.494	ENSMODG00000014067	USB1	81	81.193	Monodelphis_domestica
ENSSHAG00000006993	USB1	90	52.863	ENSMALG00000005930	usb1	77	52.055	Monopterus_albus
ENSSHAG00000006993	USB1	100	67.451	MGP_CAROLIEiJ_G0031421	Usb1	100	70.796	Mus_caroli
ENSSHAG00000006993	USB1	100	67.188	ENSMUSG00000031792	Usb1	100	70.796	Mus_musculus
ENSSHAG00000006993	USB1	96	68.443	MGP_PahariEiJ_G0023019	Usb1	100	70.940	Mus_pahari
ENSSHAG00000006993	USB1	100	67.188	MGP_SPRETEiJ_G0032540	Usb1	82	71.689	Mus_spretus
ENSSHAG00000006993	USB1	97	70.204	ENSMPUG00000004684	USB1	78	73.059	Mustela_putorius_furo
ENSSHAG00000006993	USB1	91	72.489	ENSMLUG00000007400	USB1	95	73.059	Myotis_lucifugus
ENSSHAG00000006993	USB1	98	68.952	ENSNGAG00000009703	Usb1	81	73.516	Nannospalax_galili
ENSSHAG00000006993	USB1	90	47.137	ENSNBRG00000008747	usb1	99	50.000	Neolamprologus_brichardi
ENSSHAG00000006993	USB1	88	70.270	ENSNLEG00000003340	USB1	82	72.059	Nomascus_leucogenys
ENSSHAG00000006993	USB1	66	73.529	ENSOPRG00000011803	USB1	67	73.529	Ochotona_princeps
ENSSHAG00000006993	USB1	100	67.315	ENSODEG00000016214	USB1	82	73.516	Octodon_degus
ENSSHAG00000006993	USB1	100	47.727	ENSONIG00000011063	usb1	78	51.152	Oreochromis_niloticus
ENSSHAG00000006993	USB1	91	73.593	ENSOANG00000012118	USB1	92	74.091	Ornithorhynchus_anatinus
ENSSHAG00000006993	USB1	89	50.446	ENSORLG00000012479	usb1	80	49.315	Oryzias_latipes
ENSSHAG00000006993	USB1	89	50.000	ENSORLG00020018671	usb1	80	49.315	Oryzias_latipes_hni
ENSSHAG00000006993	USB1	89	50.000	ENSORLG00015009679	usb1	81	48.858	Oryzias_latipes_hsok
ENSSHAG00000006993	USB1	89	50.000	ENSOMEG00000012930	usb1	79	48.858	Oryzias_melastigma
ENSSHAG00000006993	USB1	94	64.979	ENSOGAG00000003273	USB1	81	66.210	Otolemur_garnettii
ENSSHAG00000006993	USB1	98	67.611	ENSOARG00000001107	USB1	84	71.233	Ovis_aries
ENSSHAG00000006993	USB1	94	70.464	ENSPPAG00000042137	USB1	83	72.603	Pan_paniscus
ENSSHAG00000006993	USB1	99	68.000	ENSPPRG00000024797	USB1	82	72.146	Panthera_pardus
ENSSHAG00000006993	USB1	99	67.600	ENSPTIG00000007506	USB1	82	71.689	Panthera_tigris_altaica
ENSSHAG00000006993	USB1	94	64.135	ENSPTRG00000008172	USB1	100	72.430	Pan_troglodytes
ENSSHAG00000006993	USB1	96	70.492	ENSPANG00000025138	USB1	83	73.973	Papio_anubis
ENSSHAG00000006993	USB1	89	52.679	ENSPKIG00000015109	usb1	73	51.376	Paramormyrops_kingsleyae
ENSSHAG00000006993	USB1	89	50.840	ENSPSIG00000004305	USB1	98	50.000	Pelodiscus_sinensis
ENSSHAG00000006993	USB1	89	48.661	ENSPMGG00000017725	usb1	83	48.387	Periophthalmus_magnuspinnatus
ENSSHAG00000006993	USB1	94	69.620	ENSPEMG00000016183	Usb1	81	72.146	Peromyscus_maniculatus_bairdii
ENSSHAG00000006993	USB1	92	53.390	ENSPMAG00000000462	usb1	93	52.703	Petromyzon_marinus
ENSSHAG00000006993	USB1	90	51.316	ENSPFOG00000011130	usb1	78	50.917	Poecilia_formosa
ENSSHAG00000006993	USB1	90	51.316	ENSPLAG00000009820	usb1	78	50.917	Poecilia_latipinna
ENSSHAG00000006993	USB1	90	51.316	ENSPMEG00000006402	usb1	78	50.917	Poecilia_mexicana
ENSSHAG00000006993	USB1	76	53.093	ENSPREG00000001047	usb1	74	53.261	Poecilia_reticulata
ENSSHAG00000006993	USB1	88	66.964	ENSPPYG00000007401	USB1	82	68.932	Pongo_abelii
ENSSHAG00000006993	USB1	97	69.796	ENSPCOG00000022612	USB1	83	73.516	Propithecus_coquereli
ENSSHAG00000006993	USB1	100	66.798	ENSPVAG00000004613	USB1	85	70.776	Pteropus_vampyrus
ENSSHAG00000006993	USB1	90	51.982	ENSPNYG00000022262	usb1	77	51.613	Pundamilia_nyererei
ENSSHAG00000006993	USB1	99	46.825	ENSPNAG00000011736	usb1	74	49.083	Pygocentrus_nattereri
ENSSHAG00000006993	USB1	100	66.667	ENSRNOG00000013216	Usb1	82	71.689	Rattus_norvegicus
ENSSHAG00000006993	USB1	96	63.934	ENSRBIG00000044466	USB1	100	73.364	Rhinopithecus_bieti
ENSSHAG00000006993	USB1	96	70.492	ENSRROG00000029211	USB1	83	73.973	Rhinopithecus_roxellana
ENSSHAG00000006993	USB1	94	70.042	ENSSBOG00000029362	USB1	83	73.059	Saimiri_boliviensis_boliviensis
ENSSHAG00000006993	USB1	90	54.348	ENSSFOG00015023663	usb1	68	54.378	Scleropages_formosus
ENSSHAG00000006993	USB1	89	50.420	ENSSMAG00000015834	usb1	78	50.216	Scophthalmus_maximus
ENSSHAG00000006993	USB1	89	52.679	ENSSDUG00000002949	usb1	81	51.835	Seriola_dumerili
ENSSHAG00000006993	USB1	89	52.679	ENSSLDG00000014174	usb1	78	51.835	Seriola_lalandi_dorsalis
ENSSHAG00000006993	USB1	85	64.953	ENSSPUG00000006741	USB1	100	64.953	Sphenodon_punctatus
ENSSHAG00000006993	USB1	90	51.101	ENSSPAG00000007484	usb1	76	50.459	Stegastes_partitus
ENSSHAG00000006993	USB1	93	68.644	ENSSSCG00000002807	USB1	81	71.101	Sus_scrofa
ENSSHAG00000006993	USB1	84	64.151	ENSTGUG00000004792	USB1	83	64.151	Taeniopygia_guttata
ENSSHAG00000006993	USB1	94	47.083	ENSTRUG00000021069	usb1	81	48.165	Takifugu_rubripes
ENSSHAG00000006993	USB1	89	47.321	ENSTNIG00000000626	usb1	81	46.330	Tetraodon_nigroviridis
ENSSHAG00000006993	USB1	91	48.485	ENSTBEG00000001507	USB1	94	48.858	Tupaia_belangeri
ENSSHAG00000006993	USB1	94	70.168	ENSUAMG00000016823	USB1	81	71.689	Ursus_americanus
ENSSHAG00000006993	USB1	85	71.495	ENSUMAG00000021369	USB1	100	71.495	Ursus_maritimus
ENSSHAG00000006993	USB1	97	69.106	ENSVVUG00000023700	USB1	84	73.394	Vulpes_vulpes
ENSSHAG00000006993	USB1	86	56.881	ENSXETG00000013795	usb1	87	56.881	Xenopus_tropicalis
ENSSHAG00000006993	USB1	90	51.754	ENSXMAG00000024687	usb1	64	51.376	Xiphophorus_maculatus