EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000007890 (Gene tree)
Gene ID: 100921357
Gene Symbol: -
Alias: -
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 50236 bases
Position: chrGL857106.1:363992-414227
Accession: 100921357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000009111	KH_1	PF00013.29	8.3e-56	1	3
ENSSHAP00000009111	KH_1	PF00013.29	8.3e-56	2	3
ENSSHAP00000009111	KH_1	PF00013.29	8.3e-56	3	3
ENSSHAP00000009110	KH_1	PF00013.29	1.3e-55	1	3
ENSSHAP00000009110	KH_1	PF00013.29	1.3e-55	2	3
ENSSHAP00000009110	KH_1	PF00013.29	1.3e-55	3	3
ENSSHAP00000009111	KH_2	PF07650.17	1.3e-15	1	1
ENSSHAP00000009110	KH_2	PF07650.17	1.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000009188	-	1017	XM_003770402	ENSSHAP00000009111	338 (aa)	XP_003770450	G3W106
ENSSHAT00000009187	-	1128	-	ENSSHAP00000009110	375 (aa)	-	G3W105

Gene Model

Click here to download ENSSHAG00000007890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000007890's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000007890	-	99	72.533	ENSSHAG00000007342	PCBP2	99	73.713
ENSSHAG00000007890	-	71	31.633	ENSSHAG00000005367	FUBP1	70	40.625
ENSSHAG00000007890	-	72	50.000	ENSSHAG00000002737	-	58	50.000
ENSSHAG00000007890	-	98	35.294	ENSSHAG00000013152	IGF2BP2	70	35.294
ENSSHAG00000007890	-	71	32.075	ENSSHAG00000011383	KHSRP	59	37.143
ENSSHAG00000007890	-	73	52.857	ENSSHAG00000017109	HNRNPK	60	52.857
ENSSHAG00000007890	-	93	57.198	ENSSHAG00000007362	PCBP4	100	57.198
ENSSHAG00000007890	-	73	40.351	ENSSHAG00000004907	NOVA1	52	40.351
ENSSHAG00000007890	-	95	33.333	ENSSHAG00000015689	FUBP3	67	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000007890	-	98	85.886	ENSAPOG00000020003	pcbp3	87	85.886	Acanthochromis_polyacanthus
ENSSHAG00000007890	-	96	91.049	ENSAPOG00000016582	-	98	87.611	Acanthochromis_polyacanthus
ENSSHAG00000007890	-	100	94.395	ENSAMEG00000001697	-	100	86.523	Ailuropoda_melanoleuca
ENSSHAG00000007890	-	99	86.804	ENSACIG00000002739	-	98	86.804	Amphilophus_citrinellus
ENSSHAG00000007890	-	96	81.268	ENSACIG00000010933	pcbp3	97	92.021	Amphilophus_citrinellus
ENSSHAG00000007890	-	95	90.093	ENSAOCG00000008592	-	96	90.093	Amphiprion_ocellaris
ENSSHAG00000007890	-	96	91.667	ENSAOCG00000007806	-	100	91.667	Amphiprion_ocellaris
ENSSHAG00000007890	-	96	83.862	ENSAPEG00000008011	pcbp3	93	84.900	Amphiprion_percula
ENSSHAG00000007890	-	99	89.521	ENSAPEG00000005209	-	98	89.521	Amphiprion_percula
ENSSHAG00000007890	-	95	81.792	ENSATEG00000015787	-	98	83.095	Anabas_testudineus
ENSSHAG00000007890	-	99	88.922	ENSATEG00000009833	-	98	88.922	Anabas_testudineus
ENSSHAG00000007890	-	97	74.734	ENSAPLG00000008951	-	80	76.253	Anas_platyrhynchos
ENSSHAG00000007890	-	100	94.100	ENSAPLG00000002975	-	100	94.100	Anas_platyrhynchos
ENSSHAG00000007890	-	99	80.833	ENSACAG00000009819	-	99	81.868	Anolis_carolinensis
ENSSHAG00000007890	-	100	88.674	ENSACAG00000004607	-	100	88.674	Anolis_carolinensis
ENSSHAG00000007890	-	96	91.085	ENSANAG00000030702	-	100	97.727	Aotus_nancymaae
ENSSHAG00000007890	-	96	83.573	ENSACLG00000011835	pcbp3	93	84.615	Astatotilapia_calliptera
ENSSHAG00000007890	-	99	90.719	ENSACLG00000003801	-	98	90.719	Astatotilapia_calliptera
ENSSHAG00000007890	-	97	64.124	ENSAMXG00000001760	zgc:110045	73	64.124	Astyanax_mexicanus
ENSSHAG00000007890	-	96	85.014	ENSAMXG00000003440	pcbp3	93	85.714	Astyanax_mexicanus
ENSSHAG00000007890	-	95	86.646	ENSAMXG00000013588	-	98	86.646	Astyanax_mexicanus
ENSSHAG00000007890	-	91	98.718	ENSCAFG00020019472	-	83	98.718	Canis_lupus_dingo
ENSSHAG00000007890	-	100	92.920	ENSCSAG00000007440	-	91	92.920	Chlorocebus_sabaeus
ENSSHAG00000007890	-	100	99.115	ENSCPBG00000012151	-	100	99.115	Chrysemys_picta_bellii
ENSSHAG00000007890	-	94	91.000	ENSCPBG00000000733	-	66	91.000	Chrysemys_picta_bellii
ENSSHAG00000007890	-	95	86.378	ENSCSEG00000000822	pcbp3	97	86.378	Cynoglossus_semilaevis
ENSSHAG00000007890	-	99	78.235	ENSCSEG00000016984	-	98	78.235	Cynoglossus_semilaevis
ENSSHAG00000007890	-	99	90.828	ENSCVAG00000005262	-	99	90.828	Cyprinodon_variegatus
ENSSHAG00000007890	-	96	84.104	ENSCVAG00000014482	pcbp3	93	84.615	Cyprinodon_variegatus
ENSSHAG00000007890	-	91	97.396	ENSDARG00000054378	pcbp3	99	86.264	Danio_rerio
ENSSHAG00000007890	-	100	80.236	ENSETEG00000015988	-	100	80.236	Echinops_telfairi
ENSSHAG00000007890	-	96	69.799	ENSEBUG00000016192	pcbp3	99	70.035	Eptatretus_burgeri
ENSSHAG00000007890	-	66	75.446	ENSEBUG00000005495	pcbp3	67	75.446	Eptatretus_burgeri
ENSSHAG00000007890	-	98	77.381	ENSEBUG00000007485	-	92	82.805	Eptatretus_burgeri
ENSSHAG00000007890	-	95	91.022	ENSELUG00000001560	-	97	83.051	Esox_lucius
ENSSHAG00000007890	-	96	84.401	ENSELUG00000003521	pcbp3	95	84.123	Esox_lucius
ENSSHAG00000007890	-	97	74.734	ENSFALG00000004411	-	75	76.253	Ficedula_albicollis
ENSSHAG00000007890	-	100	93.195	ENSFALG00000003949	-	100	93.195	Ficedula_albicollis
ENSSHAG00000007890	-	99	88.757	ENSFHEG00000006539	-	99	88.757	Fundulus_heteroclitus
ENSSHAG00000007890	-	96	87.692	ENSFHEG00000016615	pcbp3	94	87.692	Fundulus_heteroclitus
ENSSHAG00000007890	-	96	80.734	ENSGMOG00000011992	pcbp3	95	80.734	Gadus_morhua
ENSSHAG00000007890	-	95	70.552	ENSGMOG00000008611	-	98	70.552	Gadus_morhua
ENSSHAG00000007890	-	100	90.859	ENSGALG00000004394	-	99	92.432	Gallus_gallus
ENSSHAG00000007890	-	99	79.666	ENSGALG00000013155	-	99	79.494	Gallus_gallus
ENSSHAG00000007890	-	97	79.487	ENSGAFG00000011430	pcbp3	95	80.791	Gambusia_affinis
ENSSHAG00000007890	-	96	90.741	ENSGAFG00000010274	-	93	90.741	Gambusia_affinis
ENSSHAG00000007890	-	99	90.179	ENSGACG00000002266	-	98	90.179	Gasterosteus_aculeatus
ENSSHAG00000007890	-	99	79.494	ENSGACG00000014955	-	98	79.494	Gasterosteus_aculeatus
ENSSHAG00000007890	-	88	81.696	ENSGAGG00000006956	-	88	81.696	Gopherus_agassizii
ENSSHAG00000007890	-	92	85.315	ENSGAGG00000000271	-	100	85.315	Gopherus_agassizii
ENSSHAG00000007890	-	99	90.719	ENSHBUG00000021782	-	98	90.719	Haplochromis_burtoni
ENSSHAG00000007890	-	95	87.578	ENSHBUG00000010697	pcbp3	96	87.578	Haplochromis_burtoni
ENSSHAG00000007890	-	96	84.104	ENSHCOG00000017868	pcbp3	93	84.857	Hippocampus_comes
ENSSHAG00000007890	-	99	87.387	ENSHCOG00000006067	-	98	87.387	Hippocampus_comes
ENSSHAG00000007890	-	99	89.053	ENSIPUG00000006238	pcbp3	99	89.053	Ictalurus_punctatus
ENSSHAG00000007890	-	96	83.862	ENSKMAG00000003046	pcbp3	93	84.900	Kryptolebias_marmoratus
ENSSHAG00000007890	-	96	90.123	ENSKMAG00000018530	-	93	90.123	Kryptolebias_marmoratus
ENSSHAG00000007890	-	98	86.405	ENSLBEG00000006201	pcbp3	96	86.405	Labrus_bergylta
ENSSHAG00000007890	-	99	75.516	ENSLBEG00000006542	-	98	75.516	Labrus_bergylta
ENSSHAG00000007890	-	97	80.800	ENSLACG00000010386	pcbp3	75	81.481	Latimeria_chalumnae
ENSSHAG00000007890	-	97	74.799	ENSLACG00000010804	zgc:110045	74	76.064	Latimeria_chalumnae
ENSSHAG00000007890	-	100	92.625	ENSLOCG00000009369	pcbp3	100	92.625	Lepisosteus_oculatus
ENSSHAG00000007890	-	97	79.429	ENSLOCG00000005058	zgc:110045	81	79.944	Lepisosteus_oculatus
ENSSHAG00000007890	-	95	87.888	ENSMAMG00000022336	pcbp3	91	87.888	Mastacembelus_armatus
ENSSHAG00000007890	-	99	88.323	ENSMAMG00000011620	-	98	88.323	Mastacembelus_armatus
ENSSHAG00000007890	-	99	82.421	ENSMZEG00005014882	-	98	82.421	Maylandia_zebra
ENSSHAG00000007890	-	96	81.268	ENSMZEG00005008993	pcbp3	96	82.235	Maylandia_zebra
ENSSHAG00000007890	-	97	81.742	ENSMGAG00000001883	-	97	82.173	Meleagris_gallopavo
ENSSHAG00000007890	-	97	75.000	ENSMGAG00000006794	-	75	76.517	Meleagris_gallopavo
ENSSHAG00000007890	-	99	88.024	ENSMMOG00000005216	-	98	88.024	Mola_mola
ENSSHAG00000007890	-	95	87.037	ENSMMOG00000000730	pcbp3	86	87.037	Mola_mola
ENSSHAG00000007890	-	69	88.785	ENSMODG00000027884	-	93	88.785	Monodelphis_domestica
ENSSHAG00000007890	-	95	81.739	ENSMALG00000000691	pcbp3	98	79.027	Monopterus_albus
ENSSHAG00000007890	-	100	88.462	ENSMPUG00000001779	-	92	88.462	Mustela_putorius_furo
ENSSHAG00000007890	-	96	81.503	ENSNBRG00000016409	-	93	82.286	Neolamprologus_brichardi
ENSSHAG00000007890	-	99	81.662	ENSNBRG00000016714	-	99	82.235	Neolamprologus_brichardi
ENSSHAG00000007890	-	96	89.685	ENSOPRG00000003431	-	100	89.685	Ochotona_princeps
ENSSHAG00000007890	-	99	90.719	ENSONIG00000004611	-	98	90.719	Oreochromis_niloticus
ENSSHAG00000007890	-	95	85.217	ENSONIG00000012122	-	96	85.217	Oreochromis_niloticus
ENSSHAG00000007890	-	100	93.195	ENSOCUG00000002696	-	91	93.195	Oryctolagus_cuniculus
ENSSHAG00000007890	-	95	90.093	ENSORLG00000000059	pcbp3	98	90.093	Oryzias_latipes
ENSSHAG00000007890	-	99	91.018	ENSORLG00000022739	-	98	91.018	Oryzias_latipes
ENSSHAG00000007890	-	95	90.093	ENSORLG00020012671	pcbp3	95	90.093	Oryzias_latipes_hni
ENSSHAG00000007890	-	99	90.719	ENSORLG00020006124	-	98	90.719	Oryzias_latipes_hni
ENSSHAG00000007890	-	98	89.728	ENSORLG00015008051	-	95	89.728	Oryzias_latipes_hsok
ENSSHAG00000007890	-	95	90.093	ENSORLG00015000429	pcbp3	95	90.093	Oryzias_latipes_hsok
ENSSHAG00000007890	-	99	90.719	ENSOMEG00000020162	-	98	90.719	Oryzias_melastigma
ENSSHAG00000007890	-	96	86.774	ENSOMEG00000020811	pcbp3	99	86.774	Oryzias_melastigma
ENSSHAG00000007890	-	100	86.921	ENSOGAG00000008044	-	100	86.921	Otolemur_garnettii
ENSSHAG00000007890	-	76	84.103	ENSPKIG00000020913	-	91	77.880	Paramormyrops_kingsleyae
ENSSHAG00000007890	-	99	89.521	ENSPKIG00000019329	pcbp3	98	89.521	Paramormyrops_kingsleyae
ENSSHAG00000007890	-	92	76.981	ENSPSIG00000008350	-	68	78.810	Pelodiscus_sinensis
ENSSHAG00000007890	-	100	83.965	ENSPSIG00000014970	-	100	84.548	Pelodiscus_sinensis
ENSSHAG00000007890	-	95	83.768	ENSPMGG00000022383	pcbp3	93	84.483	Periophthalmus_magnuspinnatus
ENSSHAG00000007890	-	98	70.571	ENSPMAG00000004551	pcbp3	91	70.571	Petromyzon_marinus
ENSSHAG00000007890	-	85	89.119	ENSPMAG00000004637	-	100	89.119	Petromyzon_marinus
ENSSHAG00000007890	-	100	87.845	ENSPCIG00000028092	-	99	94.170	Phascolarctos_cinereus
ENSSHAG00000007890	-	99	89.790	ENSPLAG00000004074	-	91	89.790	Poecilia_latipinna
ENSSHAG00000007890	-	97	81.250	ENSPLAG00000011449	pcbp3	87	81.250	Poecilia_latipinna
ENSSHAG00000007890	-	100	85.755	ENSPMEG00000006653	-	98	97.674	Poecilia_mexicana
ENSSHAG00000007890	-	95	83.333	ENSPMEG00000021239	pcbp3	93	84.615	Poecilia_mexicana
ENSSHAG00000007890	-	95	85.538	ENSPREG00000015736	pcbp3	97	85.538	Poecilia_reticulata
ENSSHAG00000007890	-	99	88.922	ENSPREG00000020585	-	91	96.569	Poecilia_reticulata
ENSSHAG00000007890	-	99	88.323	ENSPNYG00000013205	-	98	88.323	Pundamilia_nyererei
ENSSHAG00000007890	-	95	87.307	ENSPNYG00000012326	pcbp3	93	87.307	Pundamilia_nyererei
ENSSHAG00000007890	-	99	91.124	ENSPNAG00000015104	pcbp3	99	91.124	Pygocentrus_nattereri
ENSSHAG00000007890	-	95	86.604	ENSPNAG00000008541	-	96	86.604	Pygocentrus_nattereri
ENSSHAG00000007890	-	100	93.215	ENSRNOG00000001245	Pcbp3	100	93.215	Rattus_norvegicus
ENSSHAG00000007890	-	100	86.337	ENSRBIG00000028177	-	100	82.842	Rhinopithecus_bieti
ENSSHAG00000007890	-	96	84.104	ENSSFOG00015014706	pcbp3	93	84.286	Scleropages_formosus
ENSSHAG00000007890	-	96	91.641	ENSSFOG00015010205	pcbp3	93	91.641	Scleropages_formosus
ENSSHAG00000007890	-	99	78.932	ENSSFOG00015007118	-	97	78.932	Scleropages_formosus
ENSSHAG00000007890	-	95	87.616	ENSSMAG00000011929	pcbp3	95	87.616	Scophthalmus_maximus
ENSSHAG00000007890	-	99	91.018	ENSSMAG00000003135	-	98	91.018	Scophthalmus_maximus
ENSSHAG00000007890	-	96	91.282	ENSSDUG00000008502	-	98	80.864	Seriola_dumerili
ENSSHAG00000007890	-	95	82.029	ENSSDUG00000011608	pcbp3	97	82.571	Seriola_dumerili
ENSSHAG00000007890	-	96	91.049	ENSSLDG00000020161	-	93	91.049	Seriola_lalandi_dorsalis
ENSSHAG00000007890	-	95	82.029	ENSSLDG00000008518	pcbp3	97	82.571	Seriola_lalandi_dorsalis
ENSSHAG00000007890	-	95	79.299	ENSSPUG00000013214	-	92	85.854	Sphenodon_punctatus
ENSSHAG00000007890	-	95	72.206	ENSSPAG00000023341	-	90	94.737	Stegastes_partitus
ENSSHAG00000007890	-	96	92.000	ENSSPAG00000004190	-	100	92.000	Stegastes_partitus
ENSSHAG00000007890	-	99	85.799	ENSTGUG00000008158	-	100	85.799	Taeniopygia_guttata
ENSSHAG00000007890	-	100	95.575	ENSTGUG00000003316	-	100	95.575	Taeniopygia_guttata
ENSSHAG00000007890	-	96	90.260	ENSTRUG00000006280	-	92	90.260	Takifugu_rubripes
ENSSHAG00000007890	-	90	95.361	ENSTRUG00000013604	pcbp3	85	95.361	Takifugu_rubripes
ENSSHAG00000007890	-	100	91.967	ENSTTRG00000015075	-	100	91.967	Tursiops_truncatus
ENSSHAG00000007890	-	100	92.330	ENSXETG00000011483	pcbp1	100	92.330	Xenopus_tropicalis
ENSSHAG00000007890	-	91	75.833	ENSXETG00000010491	pcbp2	74	75.833	Xenopus_tropicalis
ENSSHAG00000007890	-	95	83.333	ENSXCOG00000020481	pcbp3	93	84.615	Xiphophorus_couchianus
ENSSHAG00000007890	-	96	83.862	ENSXMAG00000008175	pcbp3	93	84.900	Xiphophorus_maculatus
ENSSHAG00000007890	-	96	91.049	ENSXMAG00000028711	-	93	91.049	Xiphophorus_maculatus