EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000007988 (Gene tree)
Gene ID: 100926781
Gene Symbol: BLM
Alias: BS|RECQ2|RECQL3
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 63687 bases
Position: chrGL834472.1:373147-436833
Accession: 100926781
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000009228	HRDC	PF00570.23	1.2e-11	1	1
ENSSHAP00000009227	HRDC	PF00570.23	1.3e-11	1	1
ENSSHAP00000009228	BDHCT	PF08072.11	7.6e-20	1	1
ENSSHAP00000009227	BDHCT	PF08072.11	7.9e-20	1	1
ENSSHAP00000009228	DEAD	PF00270.29	7.8e-19	1	1
ENSSHAP00000009227	DEAD	PF00270.29	8.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000009308	BLM-202	4689	-	ENSSHAP00000009228	1404 (aa)	-	G3W1C3
ENSSHAT00000009307	BLM-201	4812	XM_023496841	ENSSHAP00000009227	1445 (aa)	XP_023352609	G3W1C2

Gene Model

Click here to download ENSSHAG00000007988's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03440	Homologous recombination	KEGG
shr03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000007988's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000007988	BLM	99	65.090	ENSG00000197299	BLM	99	64.951	Homo_sapiens
ENSSHAG00000007988	BLM	81	52.389	ENSAPOG00000017966	blm	88	62.105	Acanthochromis_polyacanthus
ENSSHAG00000007988	BLM	99	63.914	ENSAMEG00000013843	BLM	99	63.775	Ailuropoda_melanoleuca
ENSSHAG00000007988	BLM	70	62.207	ENSACIG00000023762	blm	70	62.191	Amphilophus_citrinellus
ENSSHAG00000007988	BLM	67	61.189	ENSAOCG00000003318	blm	69	61.593	Amphiprion_ocellaris
ENSSHAG00000007988	BLM	67	61.072	ENSAPEG00000018105	blm	88	61.475	Amphiprion_percula
ENSSHAG00000007988	BLM	61	62.209	ENSATEG00000006421	blm	81	51.753	Anabas_testudineus
ENSSHAG00000007988	BLM	83	59.468	ENSAPLG00000006878	BLM	98	58.877	Anas_platyrhynchos
ENSSHAG00000007988	BLM	54	71.519	ENSACAG00000014275	BLM	79	56.261	Anolis_carolinensis
ENSSHAG00000007988	BLM	99	64.231	ENSANAG00000038415	BLM	99	63.674	Aotus_nancymaae
ENSSHAG00000007988	BLM	88	62.353	ENSACLG00000020354	blm	86	62.588	Astatotilapia_calliptera
ENSSHAG00000007988	BLM	59	61.502	ENSAMXG00000016970	blm	86	62.024	Astyanax_mexicanus
ENSSHAG00000007988	BLM	95	64.118	ENSBTAG00000020301	BLM	99	64.118	Bos_taurus
ENSSHAG00000007988	BLM	99	63.839	ENSCJAG00000009803	BLM	99	63.352	Callithrix_jacchus
ENSSHAG00000007988	BLM	99	64.181	ENSCAFG00000012385	BLM	99	64.136	Canis_familiaris
ENSSHAG00000007988	BLM	99	63.902	ENSCAFG00020016111	BLM	94	85.359	Canis_lupus_dingo
ENSSHAG00000007988	BLM	99	62.867	ENSCHIG00000010329	BLM	99	63.125	Capra_hircus
ENSSHAG00000007988	BLM	99	63.359	ENSTSYG00000012368	BLM	99	63.428	Carlito_syrichta
ENSSHAG00000007988	BLM	88	77.089	ENSCAPG00000017976	BLM	99	77.410	Cavia_aperea
ENSSHAG00000007988	BLM	99	61.704	ENSCPOG00000001761	BLM	99	61.869	Cavia_porcellus
ENSSHAG00000007988	BLM	99	63.814	ENSCCAG00000023069	BLM	99	63.257	Cebus_capucinus
ENSSHAG00000007988	BLM	99	64.465	ENSCATG00000040609	BLM	91	84.469	Cercocebus_atys
ENSSHAG00000007988	BLM	99	62.526	ENSCLAG00000012111	BLM	99	62.831	Chinchilla_lanigera
ENSSHAG00000007988	BLM	99	64.315	ENSCSAG00000017040	BLM	99	64.177	Chlorocebus_sabaeus
ENSSHAG00000007988	BLM	92	68.894	ENSCHOG00000006255	BLM	94	69.038	Choloepus_hoffmanni
ENSSHAG00000007988	BLM	89	55.856	ENSCPBG00000025000	BLM	97	75.140	Chrysemys_picta_bellii
ENSSHAG00000007988	BLM	84	82.222	ENSCANG00000034808	BLM	100	82.222	Colobus_angolensis_palliatus
ENSSHAG00000007988	BLM	99	61.908	ENSCGRG00001024897	Blm	99	61.351	Cricetulus_griseus_chok1gshd
ENSSHAG00000007988	BLM	68	54.283	ENSCGRG00000016261	Blm	97	54.928	Cricetulus_griseus_crigri
ENSSHAG00000007988	BLM	61	61.279	ENSCSEG00000013483	blm	86	51.397	Cynoglossus_semilaevis
ENSSHAG00000007988	BLM	84	64.268	ENSDARG00000077089	blm	73	80.488	Danio_rerio
ENSSHAG00000007988	BLM	100	63.158	ENSDNOG00000010159	BLM	99	63.158	Dasypus_novemcinctus
ENSSHAG00000007988	BLM	75	70.275	ENSDORG00000011033	Blm	99	70.465	Dipodomys_ordii
ENSSHAG00000007988	BLM	54	42.051	FBgn0002906	Blm	50	42.593	Drosophila_melanogaster
ENSSHAG00000007988	BLM	87	58.095	ENSETEG00000015019	BLM	86	58.095	Echinops_telfairi
ENSSHAG00000007988	BLM	99	61.892	ENSEASG00005006727	BLM	99	61.822	Equus_asinus_asinus
ENSSHAG00000007988	BLM	99	63.463	ENSECAG00000011405	BLM	99	63.736	Equus_caballus
ENSSHAG00000007988	BLM	98	62.129	ENSEEUG00000001434	BLM	98	62.201	Erinaceus_europaeus
ENSSHAG00000007988	BLM	78	65.000	ENSELUG00000019098	blm	60	68.219	Esox_lucius
ENSSHAG00000007988	BLM	99	63.516	ENSFCAG00000006087	BLM	99	63.516	Felis_catus
ENSSHAG00000007988	BLM	72	66.820	ENSFALG00000010981	BLM	79	67.450	Ficedula_albicollis
ENSSHAG00000007988	BLM	99	54.754	ENSFDAG00000012658	BLM	99	54.754	Fukomys_damarensis
ENSSHAG00000007988	BLM	81	51.997	ENSFHEG00000002553	blm	99	44.393	Fundulus_heteroclitus
ENSSHAG00000007988	BLM	88	58.661	ENSGMOG00000016431	blm	98	57.858	Gadus_morhua
ENSSHAG00000007988	BLM	84	56.139	ENSGALG00000008256	BLM	83	57.810	Gallus_gallus
ENSSHAG00000007988	BLM	61	61.475	ENSGAFG00000001117	blm	99	44.715	Gambusia_affinis
ENSSHAG00000007988	BLM	80	51.426	ENSGACG00000010863	blm	100	73.295	Gasterosteus_aculeatus
ENSSHAG00000007988	BLM	89	54.070	ENSGAGG00000005383	BLM	80	78.778	Gopherus_agassizii
ENSSHAG00000007988	BLM	99	64.534	ENSGGOG00000007710	BLM	91	85.014	Gorilla_gorilla
ENSSHAG00000007988	BLM	86	63.090	ENSHBUG00000015943	blm	88	62.676	Haplochromis_burtoni
ENSSHAG00000007988	BLM	99	63.092	ENSHGLG00000013231	BLM	99	62.604	Heterocephalus_glaber_female
ENSSHAG00000007988	BLM	62	59.954	ENSHCOG00000011455	blm	82	62.015	Hippocampus_comes
ENSSHAG00000007988	BLM	75	53.214	ENSIPUG00000000529	blm	67	64.267	Ictalurus_punctatus
ENSSHAG00000007988	BLM	99	62.742	ENSSTOG00000005000	BLM	99	62.881	Ictidomys_tridecemlineatus
ENSSHAG00000007988	BLM	67	71.719	ENSJJAG00000016322	Blm	94	71.719	Jaculus_jaculus
ENSSHAG00000007988	BLM	62	60.159	ENSKMAG00000016608	blm	75	54.101	Kryptolebias_marmoratus
ENSSHAG00000007988	BLM	50	67.903	ENSLBEG00000018729	blm	81	67.903	Labrus_bergylta
ENSSHAG00000007988	BLM	86	67.911	ENSLACG00000006490	BLM	88	67.795	Latimeria_chalumnae
ENSSHAG00000007988	BLM	91	56.757	ENSLOCG00000014302	blm	87	62.470	Lepisosteus_oculatus
ENSSHAG00000007988	BLM	99	64.604	ENSMFAG00000042982	BLM	91	84.741	Macaca_fascicularis
ENSSHAG00000007988	BLM	99	64.743	ENSMMUG00000019526	BLM	91	84.741	Macaca_mulatta
ENSSHAG00000007988	BLM	98	62.784	ENSMNEG00000031251	BLM	91	84.469	Macaca_nemestrina
ENSSHAG00000007988	BLM	99	62.378	ENSMLEG00000032934	BLM	99	62.239	Mandrillus_leucophaeus
ENSSHAG00000007988	BLM	66	62.222	ENSMAMG00000008726	blm	88	62.339	Mastacembelus_armatus
ENSSHAG00000007988	BLM	86	62.264	ENSMZEG00005022323	blm	75	53.016	Maylandia_zebra
ENSSHAG00000007988	BLM	99	62.465	ENSMAUG00000008953	Blm	99	61.908	Mesocricetus_auratus
ENSSHAG00000007988	BLM	99	63.864	ENSMICG00000034442	BLM	99	63.864	Microcebus_murinus
ENSSHAG00000007988	BLM	99	61.908	ENSMOCG00000016367	Blm	99	61.212	Microtus_ochrogaster
ENSSHAG00000007988	BLM	87	61.905	ENSMMOG00000006959	blm	87	63.114	Mola_mola
ENSSHAG00000007988	BLM	100	84.521	ENSMODG00000019449	BLM	100	84.589	Monodelphis_domestica
ENSSHAG00000007988	BLM	99	60.514	MGP_CAROLIEiJ_G0029907	Blm	99	60.375	Mus_caroli
ENSSHAG00000007988	BLM	99	60.648	ENSMUSG00000030528	Blm	99	60.704	Mus_musculus
ENSSHAG00000007988	BLM	99	61.538	MGP_PahariEiJ_G0013129	Blm	99	61.192	Mus_pahari
ENSSHAG00000007988	BLM	99	61.050	MGP_SPRETEiJ_G0031009	Blm	99	60.912	Mus_spretus
ENSSHAG00000007988	BLM	85	62.500	ENSMPUG00000015657	BLM	99	63.011	Mustela_putorius_furo
ENSSHAG00000007988	BLM	99	62.396	ENSMLUG00000014697	BLM	99	62.535	Myotis_lucifugus
ENSSHAG00000007988	BLM	99	62.140	ENSNGAG00000001275	Blm	99	62.091	Nannospalax_galili
ENSSHAG00000007988	BLM	87	62.830	ENSNBRG00000019702	blm	59	63.309	Neolamprologus_brichardi
ENSSHAG00000007988	BLM	99	63.352	ENSNLEG00000012087	BLM	99	69.479	Nomascus_leucogenys
ENSSHAG00000007988	BLM	100	78.871	ENSMEUG00000007253	BLM	100	78.940	Notamacropus_eugenii
ENSSHAG00000007988	BLM	95	79.750	ENSOPRG00000011667	BLM	95	78.779	Ochotona_princeps
ENSSHAG00000007988	BLM	75	66.793	ENSODEG00000015373	BLM	99	66.478	Octodon_degus
ENSSHAG00000007988	BLM	86	63.102	ENSONIG00000015193	blm	78	51.448	Oreochromis_niloticus
ENSSHAG00000007988	BLM	54	81.818	ENSOANG00000009316	-	100	81.664	Ornithorhynchus_anatinus
ENSSHAG00000007988	BLM	99	60.125	ENSOCUG00000013969	BLM	99	59.736	Oryctolagus_cuniculus
ENSSHAG00000007988	BLM	87	63.201	ENSORLG00000008110	blm	88	63.102	Oryzias_latipes
ENSSHAG00000007988	BLM	87	63.084	ENSORLG00020004812	blm	88	63.102	Oryzias_latipes_hni
ENSSHAG00000007988	BLM	87	63.435	ENSORLG00015018640	blm	88	63.337	Oryzias_latipes_hsok
ENSSHAG00000007988	BLM	87	62.617	ENSOMEG00000023545	blm	88	62.706	Oryzias_melastigma
ENSSHAG00000007988	BLM	99	60.794	ENSOGAG00000005708	BLM	99	60.933	Otolemur_garnettii
ENSSHAG00000007988	BLM	99	63.140	ENSOARG00000012875	BLM	99	63.208	Ovis_aries
ENSSHAG00000007988	BLM	99	64.951	ENSPPAG00000032173	BLM	99	64.812	Pan_paniscus
ENSSHAG00000007988	BLM	99	63.165	ENSPPRG00000002471	BLM	99	63.165	Panthera_pardus
ENSSHAG00000007988	BLM	99	63.097	ENSPTIG00000016168	BLM	99	63.097	Panthera_tigris_altaica
ENSSHAG00000007988	BLM	99	64.812	ENSPTRG00000007460	BLM	99	64.673	Pan_troglodytes
ENSSHAG00000007988	BLM	99	64.673	ENSPANG00000018572	BLM	91	84.741	Papio_anubis
ENSSHAG00000007988	BLM	89	62.073	ENSPKIG00000008954	blm	86	51.051	Paramormyrops_kingsleyae
ENSSHAG00000007988	BLM	52	66.071	ENSPMGG00000006629	blm	80	66.944	Periophthalmus_magnuspinnatus
ENSSHAG00000007988	BLM	99	61.266	ENSPEMG00000017348	Blm	99	61.042	Peromyscus_maniculatus_bairdii
ENSSHAG00000007988	BLM	50	57.382	ENSPMAG00000000445	blm	95	57.639	Petromyzon_marinus
ENSSHAG00000007988	BLM	100	87.474	ENSPCIG00000006609	BLM	100	87.543	Phascolarctos_cinereus
ENSSHAG00000007988	BLM	86	61.827	ENSPFOG00000005059	blm	88	62.000	Poecilia_formosa
ENSSHAG00000007988	BLM	61	61.737	ENSPLAG00000017344	blm	80	51.342	Poecilia_latipinna
ENSSHAG00000007988	BLM	61	61.620	ENSPMEG00000000321	blm	80	51.298	Poecilia_mexicana
ENSSHAG00000007988	BLM	61	61.150	ENSPREG00000007715	blm	79	50.815	Poecilia_reticulata
ENSSHAG00000007988	BLM	99	63.839	ENSPPYG00000006784	BLM	99	63.700	Pongo_abelii
ENSSHAG00000007988	BLM	72	76.028	ENSPCAG00000008960	BLM	71	75.441	Procavia_capensis
ENSSHAG00000007988	BLM	99	58.206	ENSPCOG00000000439	BLM	99	63.095	Propithecus_coquereli
ENSSHAG00000007988	BLM	79	91.640	ENSPVAG00000011642	BLM	78	91.640	Pteropus_vampyrus
ENSSHAG00000007988	BLM	88	52.056	ENSPNYG00000010956	blm	88	52.638	Pundamilia_nyererei
ENSSHAG00000007988	BLM	61	62.428	ENSPNAG00000011714	blm	70	62.881	Pygocentrus_nattereri
ENSSHAG00000007988	BLM	99	61.080	ENSRNOG00000011213	Blm	99	60.799	Rattus_norvegicus
ENSSHAG00000007988	BLM	99	63.700	ENSRBIG00000029656	BLM	91	83.924	Rhinopithecus_bieti
ENSSHAG00000007988	BLM	99	64.325	ENSRROG00000037871	BLM	91	83.924	Rhinopithecus_roxellana
ENSSHAG00000007988	BLM	91	64.286	ENSSBOG00000030957	BLM	99	61.491	Saimiri_boliviensis_boliviensis
ENSSHAG00000007988	BLM	59	62.143	ENSSFOG00015015462	blm	79	52.869	Scleropages_formosus
ENSSHAG00000007988	BLM	81	53.012	ENSSDUG00000010955	blm	80	52.977	Seriola_dumerili
ENSSHAG00000007988	BLM	85	65.161	ENSSARG00000006398	BLM	90	65.161	Sorex_araneus
ENSSHAG00000007988	BLM	82	56.390	ENSSPUG00000000013	BLM	97	56.076	Sphenodon_punctatus
ENSSHAG00000007988	BLM	60	61.972	ENSSPAG00000013999	blm	59	62.485	Stegastes_partitus
ENSSHAG00000007988	BLM	96	82.944	ENSSSCG00000001816	BLM	99	65.000	Sus_scrofa
ENSSHAG00000007988	BLM	81	51.349	ENSTGUG00000009959	-	100	51.349	Taeniopygia_guttata
ENSSHAG00000007988	BLM	69	60.748	ENSTNIG00000019246	blm	81	51.298	Tetraodon_nigroviridis
ENSSHAG00000007988	BLM	80	75.236	ENSTBEG00000006706	BLM	81	75.425	Tupaia_belangeri
ENSSHAG00000007988	BLM	99	65.199	ENSTTRG00000016386	BLM	99	65.433	Tursiops_truncatus
ENSSHAG00000007988	BLM	99	63.800	ENSUMAG00000009105	BLM	96	84.966	Ursus_maritimus
ENSSHAG00000007988	BLM	100	62.448	ENSVPAG00000000085	BLM	100	62.821	Vicugna_pacos
ENSSHAG00000007988	BLM	96	82.990	ENSVVUG00000006402	BLM	99	83.128	Vulpes_vulpes
ENSSHAG00000007988	BLM	100	50.742	ENSXETG00000007847	blm	55	73.052	Xenopus_tropicalis
ENSSHAG00000007988	BLM	61	57.494	ENSXCOG00000020227	blm	58	57.412	Xiphophorus_couchianus
ENSSHAG00000007988	BLM	61	60.539	ENSXMAG00000002951	blm	99	44.422	Xiphophorus_maculatus