EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000008672 (Gene tree)
Gene ID: 100921430
Gene Symbol: MSI2
Alias: -
Full Name: musashi RNA binding protein 2
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 525350 bases
Position: chrGL856815.1:450001-975350
Accession: 100921430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000010027	RRM_1	PF00076.22	8.3e-35	1	2
ENSSHAP00000010027	RRM_1	PF00076.22	8.3e-35	2	2
ENSSHAP00000010028	RRM_1	PF00076.22	7.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000010116	MSI2-202	486	-	ENSSHAP00000010028	162 (aa)	-	G3W3M3
ENSSHAT00000010115	MSI2-201	1044	-	ENSSHAP00000010027	324 (aa)	XP_023357921	G3W3M2

Gene Model

Click here to download ENSSHAG00000008672's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000008672's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000008672	MSI2	52	56.471	ENSSHAG00000013616	-	62	42.083
ENSSHAG00000008672	MSI2	53	43.860	ENSSHAG00000018255	HNRNPA3	66	43.716
ENSSHAG00000008672	MSI2	56	40.237	ENSSHAG00000015609	-	78	40.237
ENSSHAG00000008672	MSI2	53	49.102	ENSSHAG00000013312	HNRNPD	71	47.594
ENSSHAG00000008672	MSI2	53	42.690	ENSSHAG00000009954	-	52	41.436
ENSSHAG00000008672	MSI2	52	32.877	ENSSHAG00000014033	TARDBP	66	32.877
ENSSHAG00000008672	MSI2	52	60.000	ENSSHAG00000015802	-	68	48.387
ENSSHAG00000008672	MSI2	100	62.581	ENSSHAG00000006834	MSI1	100	59.804

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000008672	MSI2	100	98.765	ENSG00000153944	MSI2	100	98.765	Homo_sapiens
ENSSHAG00000008672	MSI2	100	88.615	ENSAPOG00000001658	msi2a	97	85.358	Acanthochromis_polyacanthus
ENSSHAG00000008672	MSI2	100	98.765	ENSAMEG00000002697	MSI2	99	98.765	Ailuropoda_melanoleuca
ENSSHAG00000008672	MSI2	100	75.749	ENSACIG00000009475	msi2a	97	75.749	Amphilophus_citrinellus
ENSSHAG00000008672	MSI2	86	55.000	ENSAOCG00000014822	msi2a	64	80.800	Amphiprion_ocellaris
ENSSHAG00000008672	MSI2	100	88.615	ENSAPEG00000007706	msi2a	97	85.358	Amphiprion_percula
ENSSHAG00000008672	MSI2	100	88.615	ENSATEG00000010498	msi2a	97	85.358	Anabas_testudineus
ENSSHAG00000008672	MSI2	100	88.176	ENSATEG00000003301	-	100	88.176	Anabas_testudineus
ENSSHAG00000008672	MSI2	100	71.105	ENSACAG00000005452	MSI2	68	98.913	Anolis_carolinensis
ENSSHAG00000008672	MSI2	100	93.210	ENSANAG00000037827	MSI2	91	98.198	Aotus_nancymaae
ENSSHAG00000008672	MSI2	100	88.308	ENSACLG00000007752	msi2a	97	85.047	Astatotilapia_calliptera
ENSSHAG00000008672	MSI2	100	90.769	ENSAMXG00000032796	msi2a	94	87.346	Astyanax_mexicanus
ENSSHAG00000008672	MSI2	100	90.123	ENSAMXG00000010474	msi2b	97	90.123	Astyanax_mexicanus
ENSSHAG00000008672	MSI2	100	92.901	ENSBTAG00000004406	MSI2	97	92.901	Bos_taurus
ENSSHAG00000008672	MSI2	89	47.297	WBGene00003423	msi-1	71	62.996	Caenorhabditis_elegans
ENSSHAG00000008672	MSI2	100	93.210	ENSCJAG00000013998	MSI2	91	98.198	Callithrix_jacchus
ENSSHAG00000008672	MSI2	100	97.492	ENSCAFG00020025620	MSI2	81	97.492	Canis_lupus_dingo
ENSSHAG00000008672	MSI2	100	92.901	ENSCHIG00000016580	MSI2	94	92.901	Capra_hircus
ENSSHAG00000008672	MSI2	100	88.333	ENSCPOG00000034042	MSI2	99	88.333	Cavia_porcellus
ENSSHAG00000008672	MSI2	100	93.210	ENSCCAG00000033927	MSI2	91	98.198	Cebus_capucinus
ENSSHAG00000008672	MSI2	100	93.210	ENSCATG00000040879	MSI2	91	98.198	Cercocebus_atys
ENSSHAG00000008672	MSI2	100	98.765	ENSCLAG00000014325	MSI2	94	98.765	Chinchilla_lanigera
ENSSHAG00000008672	MSI2	100	93.210	ENSCSAG00000005633	MSI2	94	93.210	Chlorocebus_sabaeus
ENSSHAG00000008672	MSI2	76	96.078	ENSCHOG00000008660	MSI2	83	96.078	Choloepus_hoffmanni
ENSSHAG00000008672	MSI2	97	96.825	ENSCPBG00000009942	MSI2	96	93.688	Chrysemys_picta_bellii
ENSSHAG00000008672	MSI2	64	72.000	ENSCING00000018579	-	97	49.791	Ciona_intestinalis
ENSSHAG00000008672	MSI2	65	66.063	ENSCSAVG00000010397	-	94	54.403	Ciona_savignyi
ENSSHAG00000008672	MSI2	100	98.765	ENSCANG00000036414	MSI2	100	98.765	Colobus_angolensis_palliatus
ENSSHAG00000008672	MSI2	100	92.923	ENSCGRG00001013330	Msi2	94	92.923	Cricetulus_griseus_chok1gshd
ENSSHAG00000008672	MSI2	100	98.462	ENSCGRG00000003141	Msi2	100	98.462	Cricetulus_griseus_crigri
ENSSHAG00000008672	MSI2	84	68.868	ENSCSEG00000013557	msi2a	83	67.453	Cynoglossus_semilaevis
ENSSHAG00000008672	MSI2	86	63.571	ENSCSEG00000013549	msi2a	88	73.457	Cynoglossus_semilaevis
ENSSHAG00000008672	MSI2	100	79.365	ENSCSEG00000003266	-	92	79.365	Cynoglossus_semilaevis
ENSSHAG00000008672	MSI2	100	88.308	ENSCVAG00000017075	msi2a	94	87.842	Cyprinodon_variegatus
ENSSHAG00000008672	MSI2	100	79.781	ENSDARG00000033901	msi2a	95	79.781	Danio_rerio
ENSSHAG00000008672	MSI2	92	89.667	ENSDARG00000032614	msi2b	100	99.010	Danio_rerio
ENSSHAG00000008672	MSI2	100	92.810	ENSDNOG00000014501	MSI2	100	92.810	Dasypus_novemcinctus
ENSSHAG00000008672	MSI2	84	80.930	ENSDORG00000005394	Msi2	84	74.884	Dipodomys_ordii
ENSSHAG00000008672	MSI2	52	99.115	ENSDORG00000028440	-	100	99.115	Dipodomys_ordii
ENSSHAG00000008672	MSI2	100	59.249	FBgn0260943	Rbp6	88	67.123	Drosophila_melanogaster
ENSSHAG00000008672	MSI2	68	75.658	ENSETEG00000012450	-	64	75.658	Echinops_telfairi
ENSSHAG00000008672	MSI2	95	69.132	ENSEBUG00000006732	msi2a	87	68.810	Eptatretus_burgeri
ENSSHAG00000008672	MSI2	100	88.026	ENSEASG00005002965	MSI2	97	87.966	Equus_asinus_asinus
ENSSHAG00000008672	MSI2	100	96.084	ENSECAG00000011435	MSI2	94	96.084	Equus_caballus
ENSSHAG00000008672	MSI2	89	77.491	ENSEEUG00000007810	MSI2	100	77.491	Erinaceus_europaeus
ENSSHAG00000008672	MSI2	100	92.332	ENSELUG00000001361	msi2b	93	92.332	Esox_lucius
ENSSHAG00000008672	MSI2	100	89.032	ENSELUG00000011747	msi2a	93	89.032	Esox_lucius
ENSSHAG00000008672	MSI2	100	93.210	ENSFCAG00000041686	MSI2	91	98.198	Felis_catus
ENSSHAG00000008672	MSI2	86	54.286	ENSFCAG00000033787	-	70	83.465	Felis_catus
ENSSHAG00000008672	MSI2	100	98.765	ENSFDAG00000016118	MSI2	100	98.765	Fukomys_damarensis
ENSSHAG00000008672	MSI2	100	88.308	ENSFHEG00000000084	msi2a	97	85.047	Fundulus_heteroclitus
ENSSHAG00000008672	MSI2	82	68.421	ENSGMOG00000007596	-	80	97.561	Gadus_morhua
ENSSHAG00000008672	MSI2	100	99.074	ENSGALG00000005567	MSI2	94	99.074	Gallus_gallus
ENSSHAG00000008672	MSI2	95	76.997	ENSGAFG00000006974	msi2a	78	96.899	Gambusia_affinis
ENSSHAG00000008672	MSI2	100	96.053	ENSGAGG00000016542	MSI2	100	96.053	Gopherus_agassizii
ENSSHAG00000008672	MSI2	100	98.765	ENSGGOG00000013182	MSI2	100	98.765	Gorilla_gorilla
ENSSHAG00000008672	MSI2	100	88.308	ENSHBUG00000020800	msi2a	97	85.047	Haplochromis_burtoni
ENSSHAG00000008672	MSI2	100	89.198	ENSHGLG00000012444	MSI2	93	89.198	Heterocephalus_glaber_female
ENSSHAG00000008672	MSI2	52	99.123	ENSHGLG00100004028	-	87	99.123	Heterocephalus_glaber_male
ENSSHAG00000008672	MSI2	81	98.551	ENSHGLG00100003744	MSI2	100	98.551	Heterocephalus_glaber_male
ENSSHAG00000008672	MSI2	97	85.759	ENSHCOG00000000266	msi2a	91	85.312	Hippocampus_comes
ENSSHAG00000008672	MSI2	74	87.391	ENSHCOG00000017241	-	71	88.626	Hippocampus_comes
ENSSHAG00000008672	MSI2	100	88.387	ENSIPUG00000021097	msi2a	93	87.097	Ictalurus_punctatus
ENSSHAG00000008672	MSI2	100	85.806	ENSIPUG00000003732	msi2b	93	85.806	Ictalurus_punctatus
ENSSHAG00000008672	MSI2	100	88.333	ENSSTOG00000007884	MSI2	99	88.333	Ictidomys_tridecemlineatus
ENSSHAG00000008672	MSI2	52	99.115	ENSJJAG00000009467	-	100	99.115	Jaculus_jaculus
ENSSHAG00000008672	MSI2	81	88.406	ENSJJAG00000006292	-	100	87.923	Jaculus_jaculus
ENSSHAG00000008672	MSI2	96	86.817	ENSKMAG00000009494	msi2a	89	87.097	Kryptolebias_marmoratus
ENSSHAG00000008672	MSI2	100	85.358	ENSLBEG00000007061	msi2a	97	85.358	Labrus_bergylta
ENSSHAG00000008672	MSI2	100	69.501	ENSLBEG00000026223	-	100	69.501	Labrus_bergylta
ENSSHAG00000008672	MSI2	51	97.590	ENSLACG00000016798	MSI2	89	97.590	Latimeria_chalumnae
ENSSHAG00000008672	MSI2	100	82.466	ENSLOCG00000004675	msi2b	95	82.466	Lepisosteus_oculatus
ENSSHAG00000008672	MSI2	100	98.765	ENSMFAG00000003775	MSI2	100	98.765	Macaca_fascicularis
ENSSHAG00000008672	MSI2	100	98.765	ENSMMUG00000002069	MSI2	100	98.765	Macaca_mulatta
ENSSHAG00000008672	MSI2	100	93.210	ENSMNEG00000045275	MSI2	91	98.198	Macaca_nemestrina
ENSSHAG00000008672	MSI2	100	98.765	ENSMLEG00000033888	MSI2	100	98.765	Mandrillus_leucophaeus
ENSSHAG00000008672	MSI2	100	85.455	ENSMAMG00000010503	msi2a	94	86.061	Mastacembelus_armatus
ENSSHAG00000008672	MSI2	100	95.633	ENSMAMG00000002488	-	85	96.899	Mastacembelus_armatus
ENSSHAG00000008672	MSI2	100	87.963	ENSMZEG00005007676	msi2a	97	85.047	Maylandia_zebra
ENSSHAG00000008672	MSI2	100	98.462	ENSMAUG00000003862	Msi2	94	98.462	Mesocricetus_auratus
ENSSHAG00000008672	MSI2	100	93.210	ENSMICG00000013598	-	91	98.198	Microcebus_murinus
ENSSHAG00000008672	MSI2	100	74.462	ENSMICG00000032913	-	93	72.923	Microcebus_murinus
ENSSHAG00000008672	MSI2	100	98.765	ENSMOCG00000005820	Msi2	94	98.765	Microtus_ochrogaster
ENSSHAG00000008672	MSI2	96	81.707	ENSMMOG00000008348	msi2a	91	82.875	Mola_mola
ENSSHAG00000008672	MSI2	81	100.000	ENSMODG00000014790	MSI2	100	100.000	Monodelphis_domestica
ENSSHAG00000008672	MSI2	100	88.615	ENSMALG00000000071	msi2a	93	96.183	Monopterus_albus
ENSSHAG00000008672	MSI2	100	98.765	MGP_CAROLIEiJ_G0016948	Msi2	100	99.115	Mus_caroli
ENSSHAG00000008672	MSI2	100	98.765	ENSMUSG00000069769	Msi2	100	99.115	Mus_musculus
ENSSHAG00000008672	MSI2	100	98.765	MGP_PahariEiJ_G0018079	Msi2	100	99.115	Mus_pahari
ENSSHAG00000008672	MSI2	100	98.765	MGP_SPRETEiJ_G0017795	Msi2	100	99.115	Mus_spretus
ENSSHAG00000008672	MSI2	100	93.210	ENSMPUG00000015377	MSI2	97	93.210	Mustela_putorius_furo
ENSSHAG00000008672	MSI2	100	92.901	ENSMLUG00000007865	MSI2	97	92.901	Myotis_lucifugus
ENSSHAG00000008672	MSI2	100	98.765	ENSNGAG00000017807	Msi2	94	98.765	Nannospalax_galili
ENSSHAG00000008672	MSI2	100	85.047	ENSNBRG00000014596	msi2a	97	85.047	Neolamprologus_brichardi
ENSSHAG00000008672	MSI2	100	98.714	ENSNLEG00000008059	MSI2	100	98.714	Nomascus_leucogenys
ENSSHAG00000008672	MSI2	68	88.158	ENSOPRG00000000872	-	64	88.158	Ochotona_princeps
ENSSHAG00000008672	MSI2	100	98.765	ENSODEG00000011974	MSI2	94	98.765	Octodon_degus
ENSSHAG00000008672	MSI2	86	65.714	ENSONIG00000001972	msi2a	72	96.899	Oreochromis_niloticus
ENSSHAG00000008672	MSI2	95	100.000	ENSOANG00000005667	MSI2	74	100.000	Ornithorhynchus_anatinus
ENSSHAG00000008672	MSI2	100	93.210	ENSOCUG00000010440	MSI2	97	93.210	Oryctolagus_cuniculus
ENSSHAG00000008672	MSI2	100	87.742	ENSORLG00000009671	msi2a	94	87.742	Oryzias_latipes
ENSSHAG00000008672	MSI2	100	88.615	ENSORLG00020021556	msi2a	95	88.146	Oryzias_latipes_hni
ENSSHAG00000008672	MSI2	100	87.742	ENSORLG00015004592	msi2a	94	87.742	Oryzias_latipes_hsok
ENSSHAG00000008672	MSI2	100	86.520	ENSOMEG00000000146	msi2a	98	86.520	Oryzias_melastigma
ENSSHAG00000008672	MSI2	100	88.889	ENSOGAG00000005621	MSI2	99	88.889	Otolemur_garnettii
ENSSHAG00000008672	MSI2	100	98.765	ENSPPAG00000037697	MSI2	100	98.765	Pan_paniscus
ENSSHAG00000008672	MSI2	100	93.210	ENSPPRG00000001848	MSI2	91	98.198	Panthera_pardus
ENSSHAG00000008672	MSI2	100	98.714	ENSPTIG00000021678	MSI2	96	98.714	Panthera_tigris_altaica
ENSSHAG00000008672	MSI2	69	82.569	ENSPTIG00000021873	-	84	82.569	Panthera_tigris_altaica
ENSSHAG00000008672	MSI2	100	98.765	ENSPTRG00000009437	MSI2	100	98.765	Pan_troglodytes
ENSSHAG00000008672	MSI2	100	93.210	ENSPANG00000022319	MSI2	91	98.198	Papio_anubis
ENSSHAG00000008672	MSI2	100	81.714	ENSPKIG00000007038	-	94	80.571	Paramormyrops_kingsleyae
ENSSHAG00000008672	MSI2	59	83.333	ENSPKIG00000017107	-	85	83.333	Paramormyrops_kingsleyae
ENSSHAG00000008672	MSI2	100	75.979	ENSPSIG00000008618	MSI2	81	98.374	Pelodiscus_sinensis
ENSSHAG00000008672	MSI2	100	84.735	ENSPMGG00000005888	msi2a	97	84.735	Periophthalmus_magnuspinnatus
ENSSHAG00000008672	MSI2	52	99.115	ENSPEMG00000021793	-	100	99.115	Peromyscus_maniculatus_bairdii
ENSSHAG00000008672	MSI2	100	99.682	ENSPCIG00000006063	MSI2	94	97.289	Phascolarctos_cinereus
ENSSHAG00000008672	MSI2	85	66.667	ENSPFOG00000019337	MSI2	74	95.181	Poecilia_formosa
ENSSHAG00000008672	MSI2	86	65.714	ENSPLAG00000000436	msi2a	64	93.333	Poecilia_latipinna
ENSSHAG00000008672	MSI2	86	55.000	ENSPMEG00000013247	msi2a	73	84.746	Poecilia_mexicana
ENSSHAG00000008672	MSI2	99	82.866	ENSPREG00000000881	msi2a	96	82.866	Poecilia_reticulata
ENSSHAG00000008672	MSI2	100	88.672	ENSPPYG00000008244	-	100	88.672	Pongo_abelii
ENSSHAG00000008672	MSI2	79	64.453	ENSPCAG00000010552	MSI2	100	64.453	Procavia_capensis
ENSSHAG00000008672	MSI2	52	99.225	ENSPCOG00000019195	-	93	99.225	Propithecus_coquereli
ENSSHAG00000008672	MSI2	100	84.566	ENSPVAG00000017053	MSI2	100	84.566	Pteropus_vampyrus
ENSSHAG00000008672	MSI2	100	87.963	ENSPNYG00000018393	msi2a	97	85.047	Pundamilia_nyererei
ENSSHAG00000008672	MSI2	100	90.462	ENSPNAG00000014957	msi2a	94	87.963	Pygocentrus_nattereri
ENSSHAG00000008672	MSI2	100	89.068	ENSPNAG00000000844	msi2b	93	86.452	Pygocentrus_nattereri
ENSSHAG00000008672	MSI2	100	92.568	ENSRNOG00000025338	Msi2	100	92.568	Rattus_norvegicus
ENSSHAG00000008672	MSI2	59	68.421	ENSRBIG00000032064	-	72	96.364	Rhinopithecus_bieti
ENSSHAG00000008672	MSI2	52	99.115	ENSRROG00000034421	-	92	99.115	Rhinopithecus_roxellana
ENSSHAG00000008672	MSI2	100	98.765	ENSSBOG00000026425	MSI2	100	98.765	Saimiri_boliviensis_boliviensis
ENSSHAG00000008672	MSI2	100	64.402	ENSSFOG00015012168	msi2b	74	88.152	Scleropages_formosus
ENSSHAG00000008672	MSI2	100	84.568	ENSSFOG00015021687	-	97	82.099	Scleropages_formosus
ENSSHAG00000008672	MSI2	100	88.615	ENSSMAG00000018484	msi2a	97	85.358	Scophthalmus_maximus
ENSSHAG00000008672	MSI2	100	86.624	ENSSDUG00000021968	-	86	96.124	Seriola_dumerili
ENSSHAG00000008672	MSI2	100	88.615	ENSSDUG00000014507	msi2a	97	85.358	Seriola_dumerili
ENSSHAG00000008672	MSI2	100	85.358	ENSSLDG00000017172	msi2a	97	85.358	Seriola_lalandi_dorsalis
ENSSHAG00000008672	MSI2	66	63.551	ENSSLDG00000021332	-	75	63.551	Seriola_lalandi_dorsalis
ENSSHAG00000008672	MSI2	86	67.857	ENSSPUG00000000913	-	82	96.324	Sphenodon_punctatus
ENSSHAG00000008672	MSI2	100	82.051	ENSSPAG00000017793	msi2a	89	81.350	Stegastes_partitus
ENSSHAG00000008672	MSI2	100	98.765	ENSSSCG00000038505	MSI2	97	98.765	Sus_scrofa
ENSSHAG00000008672	MSI2	81	98.551	ENSTGUG00000008452	MSI2	100	98.551	Taeniopygia_guttata
ENSSHAG00000008672	MSI2	100	87.179	ENSTRUG00000021248	msi2a	88	87.179	Takifugu_rubripes
ENSSHAG00000008672	MSI2	68	82.727	ENSTBEG00000001241	MSI2	67	82.727	Tupaia_belangeri
ENSSHAG00000008672	MSI2	100	83.203	ENSTTRG00000002189	MSI2	100	83.203	Tursiops_truncatus
ENSSHAG00000008672	MSI2	100	93.210	ENSUAMG00000000700	MSI2	97	93.210	Ursus_americanus
ENSSHAG00000008672	MSI2	96	84.806	ENSUMAG00000000505	MSI2	95	84.806	Ursus_maritimus
ENSSHAG00000008672	MSI2	76	64.220	ENSVPAG00000006837	-	62	84.066	Vicugna_pacos
ENSSHAG00000008672	MSI2	100	98.765	ENSVVUG00000011783	MSI2	94	98.765	Vulpes_vulpes
ENSSHAG00000008672	MSI2	100	78.297	ENSXCOG00000006113	msi2a	94	78.297	Xiphophorus_couchianus
ENSSHAG00000008672	MSI2	100	88.308	ENSXMAG00000000608	msi2a	94	87.842	Xiphophorus_maculatus