EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000009346 (Gene tree)
Gene ID: 100921813
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 29484 bases
Position: chrGL834463.1:533407-562890
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000010841	TruB_N	PF01509.18	9.4e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000010935	TRUB1-201	1040	-	ENSSHAP00000010841	299 (aa)	-	G3W5Y6

Gene Model

Click here to download ENSSHAG00000009346's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000009346's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000009346	TRUB1	86	80.469	ENSG00000165832	TRUB1	72	80.078	Homo_sapiens
ENSSHAG00000009346	TRUB1	72	70.233	ENSAPOG00000020565	trub1	77	70.233	Acanthochromis_polyacanthus
ENSSHAG00000009346	TRUB1	86	81.323	ENSAMEG00000014931	TRUB1	73	81.323	Ailuropoda_melanoleuca
ENSSHAG00000009346	TRUB1	72	64.186	ENSACIG00000003060	trub1	67	71.271	Amphilophus_citrinellus
ENSSHAG00000009346	TRUB1	72	70.233	ENSAOCG00000017188	trub1	77	70.233	Amphiprion_ocellaris
ENSSHAG00000009346	TRUB1	72	70.093	ENSAPEG00000015209	trub1	77	69.767	Amphiprion_percula
ENSSHAG00000009346	TRUB1	71	69.811	ENSATEG00000023291	trub1	75	69.811	Anabas_testudineus
ENSSHAG00000009346	TRUB1	80	78.333	ENSAPLG00000006808	TRUB1	85	78.333	Anas_platyrhynchos
ENSSHAG00000009346	TRUB1	83	71.146	ENSACAG00000009282	TRUB1	91	71.146	Anolis_carolinensis
ENSSHAG00000009346	TRUB1	85	81.496	ENSANAG00000022870	TRUB1	72	81.496	Aotus_nancymaae
ENSSHAG00000009346	TRUB1	72	69.767	ENSACLG00000000823	trub1	77	69.767	Astatotilapia_calliptera
ENSSHAG00000009346	TRUB1	72	71.163	ENSAMXG00000015845	trub1	71	71.163	Astyanax_mexicanus
ENSSHAG00000009346	TRUB1	86	80.078	ENSBTAG00000012955	TRUB1	72	80.078	Bos_taurus
ENSSHAG00000009346	TRUB1	86	81.250	ENSCJAG00000047815	TRUB1	72	81.250	Callithrix_jacchus
ENSSHAG00000009346	TRUB1	86	82.031	ENSCAFG00000011688	TRUB1	73	82.031	Canis_familiaris
ENSSHAG00000009346	TRUB1	86	82.031	ENSCAFG00020013237	TRUB1	73	82.031	Canis_lupus_dingo
ENSSHAG00000009346	TRUB1	86	80.078	ENSCHIG00000020884	TRUB1	76	80.078	Capra_hircus
ENSSHAG00000009346	TRUB1	86	80.859	ENSTSYG00000000446	TRUB1	72	80.859	Carlito_syrichta
ENSSHAG00000009346	TRUB1	85	70.196	ENSCAPG00000017088	TRUB1	99	70.196	Cavia_aperea
ENSSHAG00000009346	TRUB1	51	84.967	ENSCPOG00000030129	-	60	84.967	Cavia_porcellus
ENSSHAG00000009346	TRUB1	50	86.000	ENSCPOG00000040236	-	61	86.000	Cavia_porcellus
ENSSHAG00000009346	TRUB1	86	81.250	ENSCCAG00000028842	TRUB1	72	81.250	Cebus_capucinus
ENSSHAG00000009346	TRUB1	86	81.250	ENSCATG00000033431	TRUB1	73	81.250	Cercocebus_atys
ENSSHAG00000009346	TRUB1	50	86.000	ENSCLAG00000008664	TRUB1	61	86.000	Chinchilla_lanigera
ENSSHAG00000009346	TRUB1	86	81.250	ENSCSAG00000004891	TRUB1	73	81.250	Chlorocebus_sabaeus
ENSSHAG00000009346	TRUB1	80	69.583	ENSCHOG00000011931	TRUB1	68	69.583	Choloepus_hoffmanni
ENSSHAG00000009346	TRUB1	78	83.621	ENSCPBG00000003051	TRUB1	80	83.621	Chrysemys_picta_bellii
ENSSHAG00000009346	TRUB1	86	81.250	ENSCANG00000029445	TRUB1	73	81.250	Colobus_angolensis_palliatus
ENSSHAG00000009346	TRUB1	86	71.094	ENSCGRG00001010322	-	68	71.094	Cricetulus_griseus_chok1gshd
ENSSHAG00000009346	TRUB1	86	78.125	ENSCGRG00001016772	-	99	71.523	Cricetulus_griseus_chok1gshd
ENSSHAG00000009346	TRUB1	86	78.125	ENSCGRG00000010806	Trub1	78	78.125	Cricetulus_griseus_crigri
ENSSHAG00000009346	TRUB1	72	66.047	ENSCSEG00000011261	trub1	69	66.047	Cynoglossus_semilaevis
ENSSHAG00000009346	TRUB1	72	69.302	ENSCVAG00000008791	trub1	65	69.302	Cyprinodon_variegatus
ENSSHAG00000009346	TRUB1	81	65.432	ENSDARG00000053805	trub1	82	65.432	Danio_rerio
ENSSHAG00000009346	TRUB1	85	77.075	ENSDNOG00000001069	TRUB1	72	77.075	Dasypus_novemcinctus
ENSSHAG00000009346	TRUB1	85	80.315	ENSDORG00000010431	Trub1	73	80.315	Dipodomys_ordii
ENSSHAG00000009346	TRUB1	63	83.654	ENSETEG00000009183	TRUB1	53	83.654	Echinops_telfairi
ENSSHAG00000009346	TRUB1	86	80.078	ENSEASG00005014739	TRUB1	73	80.078	Equus_asinus_asinus
ENSSHAG00000009346	TRUB1	86	80.078	ENSECAG00000007177	TRUB1	73	80.078	Equus_caballus
ENSSHAG00000009346	TRUB1	86	67.969	ENSEEUG00000013993	TRUB1	71	67.969	Erinaceus_europaeus
ENSSHAG00000009346	TRUB1	72	71.628	ENSELUG00000000502	trub1	74	71.628	Esox_lucius
ENSSHAG00000009346	TRUB1	86	80.156	ENSFCAG00000031927	TRUB1	73	80.156	Felis_catus
ENSSHAG00000009346	TRUB1	82	78.689	ENSFALG00000002232	TRUB1	93	78.689	Ficedula_albicollis
ENSSHAG00000009346	TRUB1	50	88.000	ENSFDAG00000008140	TRUB1	61	88.000	Fukomys_damarensis
ENSSHAG00000009346	TRUB1	72	68.837	ENSFHEG00000004016	trub1	73	68.837	Fundulus_heteroclitus
ENSSHAG00000009346	TRUB1	85	73.541	ENSGALG00000009091	TRUB1	96	75.355	Gallus_gallus
ENSSHAG00000009346	TRUB1	70	66.986	ENSGAFG00000009193	trub1	73	66.986	Gambusia_affinis
ENSSHAG00000009346	TRUB1	66	68.878	ENSGACG00000015387	trub1	95	68.878	Gasterosteus_aculeatus
ENSSHAG00000009346	TRUB1	81	82.231	ENSGAGG00000009758	TRUB1	68	82.231	Gopherus_agassizii
ENSSHAG00000009346	TRUB1	86	80.859	ENSGGOG00000004583	TRUB1	72	80.859	Gorilla_gorilla
ENSSHAG00000009346	TRUB1	72	69.767	ENSHBUG00000016787	trub1	77	69.767	Haplochromis_burtoni
ENSSHAG00000009346	TRUB1	86	77.344	ENSHGLG00000015314	TRUB1	73	77.344	Heterocephalus_glaber_female
ENSSHAG00000009346	TRUB1	50	86.667	ENSHGLG00100009183	TRUB1	63	86.667	Heterocephalus_glaber_male
ENSSHAG00000009346	TRUB1	72	68.372	ENSHCOG00000017877	trub1	77	68.372	Hippocampus_comes
ENSSHAG00000009346	TRUB1	79	68.220	ENSIPUG00000017559	trub1	82	68.220	Ictalurus_punctatus
ENSSHAG00000009346	TRUB1	85	79.842	ENSSTOG00000003641	TRUB1	75	79.842	Ictidomys_tridecemlineatus
ENSSHAG00000009346	TRUB1	86	78.906	ENSJJAG00000011800	Trub1	75	78.906	Jaculus_jaculus
ENSSHAG00000009346	TRUB1	72	69.302	ENSKMAG00000006232	trub1	77	69.302	Kryptolebias_marmoratus
ENSSHAG00000009346	TRUB1	72	68.372	ENSLBEG00000026722	trub1	74	68.372	Labrus_bergylta
ENSSHAG00000009346	TRUB1	81	74.899	ENSLACG00000014885	TRUB1	82	74.899	Latimeria_chalumnae
ENSSHAG00000009346	TRUB1	78	71.368	ENSLOCG00000012979	trub1	79	71.368	Lepisosteus_oculatus
ENSSHAG00000009346	TRUB1	86	76.806	ENSLAFG00000015452	TRUB1	75	77.567	Loxodonta_africana
ENSSHAG00000009346	TRUB1	86	80.859	ENSMFAG00000031767	TRUB1	73	80.859	Macaca_fascicularis
ENSSHAG00000009346	TRUB1	86	81.250	ENSMMUG00000001902	TRUB1	73	81.250	Macaca_mulatta
ENSSHAG00000009346	TRUB1	86	75.391	ENSMNEG00000044646	TRUB1	72	75.391	Macaca_nemestrina
ENSSHAG00000009346	TRUB1	86	81.250	ENSMLEG00000042655	TRUB1	73	81.250	Mandrillus_leucophaeus
ENSSHAG00000009346	TRUB1	72	69.767	ENSMZEG00005024095	trub1	77	69.767	Maylandia_zebra
ENSSHAG00000009346	TRUB1	84	74.118	ENSMGAG00000011135	TRUB1	87	74.118	Meleagris_gallopavo
ENSSHAG00000009346	TRUB1	86	75.391	ENSMAUG00000011101	Trub1	75	75.391	Mesocricetus_auratus
ENSSHAG00000009346	TRUB1	85	81.423	ENSMICG00000016324	TRUB1	72	81.423	Microcebus_murinus
ENSSHAG00000009346	TRUB1	86	76.953	ENSMOCG00000017759	Trub1	77	76.953	Microtus_ochrogaster
ENSSHAG00000009346	TRUB1	86	98.833	ENSMODG00000009676	TRUB1	70	98.833	Monodelphis_domestica
ENSSHAG00000009346	TRUB1	86	76.953	MGP_CAROLIEiJ_G0023100	Trub1	75	76.953	Mus_caroli
ENSSHAG00000009346	TRUB1	86	76.172	ENSMUSG00000025086	Trub1	75	76.172	Mus_musculus
ENSSHAG00000009346	TRUB1	86	76.953	MGP_PahariEiJ_G0014588	Trub1	75	76.953	Mus_pahari
ENSSHAG00000009346	TRUB1	86	76.562	MGP_SPRETEiJ_G0024021	Trub1	75	76.562	Mus_spretus
ENSSHAG00000009346	TRUB1	86	82.879	ENSMPUG00000003556	TRUB1	73	82.879	Mustela_putorius_furo
ENSSHAG00000009346	TRUB1	86	81.250	ENSMLUG00000017686	TRUB1	75	81.250	Myotis_lucifugus
ENSSHAG00000009346	TRUB1	86	77.734	ENSNGAG00000018682	Trub1	73	77.734	Nannospalax_galili
ENSSHAG00000009346	TRUB1	72	70.233	ENSNBRG00000023393	trub1	76	70.233	Neolamprologus_brichardi
ENSSHAG00000009346	TRUB1	95	70.261	ENSNLEG00000016345	TRUB1	91	68.847	Nomascus_leucogenys
ENSSHAG00000009346	TRUB1	57	100.000	ENSMEUG00000006603	TRUB1	63	100.000	Notamacropus_eugenii
ENSSHAG00000009346	TRUB1	86	76.172	ENSOPRG00000009371	TRUB1	74	76.172	Ochotona_princeps
ENSSHAG00000009346	TRUB1	86	76.172	ENSODEG00000010854	TRUB1	73	76.172	Octodon_degus
ENSSHAG00000009346	TRUB1	72	69.767	ENSONIG00000007249	trub1	77	69.767	Oreochromis_niloticus
ENSSHAG00000009346	TRUB1	81	83.884	ENSOANG00000001556	TRUB1	79	83.884	Ornithorhynchus_anatinus
ENSSHAG00000009346	TRUB1	86	77.734	ENSOCUG00000009456	TRUB1	73	77.734	Oryctolagus_cuniculus
ENSSHAG00000009346	TRUB1	71	69.811	ENSORLG00000029719	trub1	75	69.811	Oryzias_latipes
ENSSHAG00000009346	TRUB1	71	69.340	ENSORLG00020016767	trub1	74	69.340	Oryzias_latipes_hni
ENSSHAG00000009346	TRUB1	71	69.811	ENSORLG00015014728	trub1	75	69.811	Oryzias_latipes_hsok
ENSSHAG00000009346	TRUB1	71	68.075	ENSOMEG00000014556	trub1	74	68.075	Oryzias_melastigma
ENSSHAG00000009346	TRUB1	86	81.250	ENSOGAG00000015895	TRUB1	73	81.250	Otolemur_garnettii
ENSSHAG00000009346	TRUB1	86	79.767	ENSOARG00000015591	TRUB1	73	79.767	Ovis_aries
ENSSHAG00000009346	TRUB1	86	80.859	ENSPPAG00000043645	TRUB1	72	80.859	Pan_paniscus
ENSSHAG00000009346	TRUB1	86	79.377	ENSPPRG00000007096	TRUB1	73	79.377	Panthera_pardus
ENSSHAG00000009346	TRUB1	86	79.767	ENSPTIG00000006378	TRUB1	73	79.767	Panthera_tigris_altaica
ENSSHAG00000009346	TRUB1	86	80.859	ENSPTRG00000002964	TRUB1	72	80.859	Pan_troglodytes
ENSSHAG00000009346	TRUB1	86	81.250	ENSPANG00000020712	TRUB1	73	81.250	Papio_anubis
ENSSHAG00000009346	TRUB1	57	69.822	ENSPKIG00000003852	trub1	72	69.822	Paramormyrops_kingsleyae
ENSSHAG00000009346	TRUB1	79	81.780	ENSPSIG00000012877	TRUB1	81	81.780	Pelodiscus_sinensis
ENSSHAG00000009346	TRUB1	82	60.408	ENSPMGG00000000075	trub1	85	60.408	Periophthalmus_magnuspinnatus
ENSSHAG00000009346	TRUB1	84	77.689	ENSPEMG00000011156	Trub1	73	77.689	Peromyscus_maniculatus_bairdii
ENSSHAG00000009346	TRUB1	86	98.054	ENSPCIG00000009729	TRUB1	79	98.054	Phascolarctos_cinereus
ENSSHAG00000009346	TRUB1	72	68.372	ENSPFOG00000009950	trub1	78	68.372	Poecilia_formosa
ENSSHAG00000009346	TRUB1	72	68.372	ENSPLAG00000013855	trub1	75	68.372	Poecilia_latipinna
ENSSHAG00000009346	TRUB1	72	68.372	ENSPMEG00000009064	trub1	77	68.372	Poecilia_mexicana
ENSSHAG00000009346	TRUB1	72	69.302	ENSPREG00000003343	trub1	77	69.302	Poecilia_reticulata
ENSSHAG00000009346	TRUB1	86	80.469	ENSPPYG00000002676	TRUB1	72	80.469	Pongo_abelii
ENSSHAG00000009346	TRUB1	86	71.875	ENSPCAG00000008427	TRUB1	72	71.875	Procavia_capensis
ENSSHAG00000009346	TRUB1	85	74.308	ENSPCOG00000024360	TRUB1	70	74.308	Propithecus_coquereli
ENSSHAG00000009346	TRUB1	57	89.941	ENSPVAG00000007575	TRUB1	64	89.941	Pteropus_vampyrus
ENSSHAG00000009346	TRUB1	72	69.767	ENSPNYG00000018614	trub1	77	69.767	Pundamilia_nyererei
ENSSHAG00000009346	TRUB1	69	67.317	ENSPNAG00000006881	trub1	75	67.317	Pygocentrus_nattereri
ENSSHAG00000009346	TRUB1	86	76.562	ENSRNOG00000017321	Trub1	74	76.562	Rattus_norvegicus
ENSSHAG00000009346	TRUB1	86	68.750	ENSRBIG00000033423	TRUB1	70	68.750	Rhinopithecus_bieti
ENSSHAG00000009346	TRUB1	86	81.250	ENSRROG00000033902	TRUB1	73	81.250	Rhinopithecus_roxellana
ENSSHAG00000009346	TRUB1	86	81.250	ENSSBOG00000024237	TRUB1	72	81.250	Saimiri_boliviensis_boliviensis
ENSSHAG00000009346	TRUB1	71	72.770	ENSSFOG00015022124	trub1	72	72.770	Scleropages_formosus
ENSSHAG00000009346	TRUB1	72	70.233	ENSSMAG00000001020	trub1	76	70.233	Scophthalmus_maximus
ENSSHAG00000009346	TRUB1	72	69.767	ENSSDUG00000016414	trub1	77	69.767	Seriola_dumerili
ENSSHAG00000009346	TRUB1	72	70.233	ENSSLDG00000015486	trub1	77	70.233	Seriola_lalandi_dorsalis
ENSSHAG00000009346	TRUB1	81	79.752	ENSSPUG00000001642	TRUB1	82	79.752	Sphenodon_punctatus
ENSSHAG00000009346	TRUB1	72	71.028	ENSSPAG00000001217	trub1	76	71.028	Stegastes_partitus
ENSSHAG00000009346	TRUB1	86	78.906	ENSSSCG00000010653	TRUB1	73	78.906	Sus_scrofa
ENSSHAG00000009346	TRUB1	84	74.902	ENSTGUG00000010971	TRUB1	90	74.902	Taeniopygia_guttata
ENSSHAG00000009346	TRUB1	86	64.844	ENSTBEG00000002880	TRUB1	100	64.844	Tupaia_belangeri
ENSSHAG00000009346	TRUB1	57	90.533	ENSTTRG00000005767	TRUB1	65	90.533	Tursiops_truncatus
ENSSHAG00000009346	TRUB1	86	82.490	ENSUAMG00000024876	TRUB1	73	82.490	Ursus_americanus
ENSSHAG00000009346	TRUB1	86	82.101	ENSUMAG00000002411	TRUB1	76	82.101	Ursus_maritimus
ENSSHAG00000009346	TRUB1	84	81.673	ENSVPAG00000005507	TRUB1	71	81.673	Vicugna_pacos
ENSSHAG00000009346	TRUB1	86	82.031	ENSVVUG00000010085	TRUB1	61	82.031	Vulpes_vulpes
ENSSHAG00000009346	TRUB1	81	66.390	ENSXETG00000023828	trub1	86	66.390	Xenopus_tropicalis
ENSSHAG00000009346	TRUB1	70	68.269	ENSXCOG00000017847	trub1	73	68.269	Xiphophorus_couchianus
ENSSHAG00000009346	TRUB1	72	66.977	ENSXMAG00000014701	trub1	77	66.977	Xiphophorus_maculatus