EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000010045 (Gene tree)
Gene ID: 100929081
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 200251 bases
Position: chrGL857007.1:629226-829476
Accession: 100929081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000011695	EST1	PF10374.9	3.7e-15	1	1
ENSSHAP00000011695	EST1_DNA_bind	PF10373.9	7.1e-62	1	1
ENSSHAP00000011695	PIN_4	PF13638.6	7.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000011791	SMG6-201	5900	XM_003770120	ENSSHAP00000011695	1415 (aa)	XP_003770168	G3W8E0

Gene Model

Click here to download ENSSHAG00000010045's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000010045's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000010045	SMG6	98	84.935	ENSG00000070366	SMG6	100	94.129	Homo_sapiens
ENSSHAG00000010045	SMG6	86	54.608	ENSAPOG00000019448	smg6	76	55.133	Acanthochromis_polyacanthus
ENSSHAG00000010045	SMG6	98	85.930	ENSAMEG00000007632	SMG6	98	85.930	Ailuropoda_melanoleuca
ENSSHAG00000010045	SMG6	73	59.619	ENSACIG00000012997	smg6	78	55.814	Amphilophus_citrinellus
ENSSHAG00000010045	SMG6	83	55.020	ENSAOCG00000002630	smg6	74	55.321	Amphiprion_ocellaris
ENSSHAG00000010045	SMG6	83	54.913	ENSAPEG00000019101	smg6	74	55.486	Amphiprion_percula
ENSSHAG00000010045	SMG6	86	54.366	ENSATEG00000006483	smg6	75	54.587	Anabas_testudineus
ENSSHAG00000010045	SMG6	87	56.863	ENSACAG00000011783	SMG6	100	58.014	Anolis_carolinensis
ENSSHAG00000010045	SMG6	98	84.577	ENSANAG00000035760	SMG6	98	84.577	Aotus_nancymaae
ENSSHAG00000010045	SMG6	71	59.266	ENSACLG00000005288	smg6	80	55.677	Astatotilapia_calliptera
ENSSHAG00000010045	SMG6	68	63.269	ENSAMXG00000017326	smg6	99	50.799	Astyanax_mexicanus
ENSSHAG00000010045	SMG6	98	85.408	ENSBTAG00000000267	SMG6	99	85.408	Bos_taurus
ENSSHAG00000010045	SMG6	98	84.362	ENSCJAG00000001820	SMG6	98	84.362	Callithrix_jacchus
ENSSHAG00000010045	SMG6	98	85.336	ENSCAFG00000019260	SMG6	99	85.336	Canis_familiaris
ENSSHAG00000010045	SMG6	98	85.336	ENSCAFG00020009770	SMG6	99	85.336	Canis_lupus_dingo
ENSSHAG00000010045	SMG6	98	84.907	ENSCHIG00000021998	SMG6	99	84.907	Capra_hircus
ENSSHAG00000010045	SMG6	98	85.007	ENSTSYG00000003406	SMG6	100	94.129	Carlito_syrichta
ENSSHAG00000010045	SMG6	90	80.796	ENSCAPG00000016197	SMG6	99	80.796	Cavia_aperea
ENSSHAG00000010045	SMG6	98	83.513	ENSCPOG00000014878	SMG6	98	89.177	Cavia_porcellus
ENSSHAG00000010045	SMG6	98	84.577	ENSCCAG00000035801	SMG6	98	84.577	Cebus_capucinus
ENSSHAG00000010045	SMG6	98	85.438	ENSCATG00000031956	SMG6	98	85.438	Cercocebus_atys
ENSSHAG00000010045	SMG6	98	85.427	ENSCLAG00000006748	SMG6	95	91.189	Chinchilla_lanigera
ENSSHAG00000010045	SMG6	98	85.509	ENSCSAG00000013800	SMG6	98	85.509	Chlorocebus_sabaeus
ENSSHAG00000010045	SMG6	51	95.522	ENSCHOG00000005024	-	65	95.522	Choloepus_hoffmanni
ENSSHAG00000010045	SMG6	98	73.243	ENSCPBG00000020369	SMG6	98	73.882	Chrysemys_picta_bellii
ENSSHAG00000010045	SMG6	98	85.284	ENSCANG00000031764	SMG6	100	93.933	Colobus_angolensis_palliatus
ENSSHAG00000010045	SMG6	53	77.778	ENSCGRG00001019595	Smg6	96	77.939	Cricetulus_griseus_chok1gshd
ENSSHAG00000010045	SMG6	98	78.289	ENSCGRG00000007782	Smg6	100	78.520	Cricetulus_griseus_crigri
ENSSHAG00000010045	SMG6	83	55.068	ENSCSEG00000012757	smg6	78	54.834	Cynoglossus_semilaevis
ENSSHAG00000010045	SMG6	72	58.543	ENSCVAG00000012789	smg6	74	54.567	Cyprinodon_variegatus
ENSSHAG00000010045	SMG6	73	59.759	ENSDARG00000100481	smg6	91	50.167	Danio_rerio
ENSSHAG00000010045	SMG6	98	84.825	ENSDNOG00000048283	SMG6	98	85.499	Dasypus_novemcinctus
ENSSHAG00000010045	SMG6	98	81.987	ENSDORG00000016614	Smg6	94	92.793	Dipodomys_ordii
ENSSHAG00000010045	SMG6	91	95.238	ENSETEG00000016790	SMG6	91	95.238	Echinops_telfairi
ENSSHAG00000010045	SMG6	69	50.938	ENSEBUG00000005059	smg6	68	49.351	Eptatretus_burgeri
ENSSHAG00000010045	SMG6	98	85.100	ENSEASG00005009318	SMG6	98	85.100	Equus_asinus_asinus
ENSSHAG00000010045	SMG6	99	85.222	ENSECAG00000006519	SMG6	99	85.222	Equus_caballus
ENSSHAG00000010045	SMG6	98	74.517	ENSEEUG00000003493	SMG6	98	74.517	Erinaceus_europaeus
ENSSHAG00000010045	SMG6	71	60.278	ENSELUG00000005934	smg6	67	56.304	Esox_lucius
ENSSHAG00000010045	SMG6	98	86.052	ENSFCAG00000028817	SMG6	99	86.052	Felis_catus
ENSSHAG00000010045	SMG6	98	72.740	ENSFALG00000006538	SMG6	100	72.954	Ficedula_albicollis
ENSSHAG00000010045	SMG6	98	84.864	ENSFDAG00000015106	SMG6	96	89.520	Fukomys_damarensis
ENSSHAG00000010045	SMG6	86	53.288	ENSFHEG00000013282	smg6	76	53.601	Fundulus_heteroclitus
ENSSHAG00000010045	SMG6	53	66.822	ENSGMOG00000019077	smg6	68	66.822	Gadus_morhua
ENSSHAG00000010045	SMG6	98	72.230	ENSGALG00000003108	SMG6	96	72.321	Gallus_gallus
ENSSHAG00000010045	SMG6	83	54.288	ENSGAFG00000000379	smg6	74	54.957	Gambusia_affinis
ENSSHAG00000010045	SMG6	90	53.755	ENSGACG00000020521	smg6	99	53.582	Gasterosteus_aculeatus
ENSSHAG00000010045	SMG6	98	72.992	ENSGAGG00000025617	SMG6	100	73.632	Gopherus_agassizii
ENSSHAG00000010045	SMG6	98	85.581	ENSGGOG00000017156	SMG6	98	85.581	Gorilla_gorilla
ENSSHAG00000010045	SMG6	71	59.286	ENSHBUG00000021311	smg6	74	55.834	Haplochromis_burtoni
ENSSHAG00000010045	SMG6	98	84.814	ENSHGLG00000012882	SMG6	96	89.956	Heterocephalus_glaber_female
ENSSHAG00000010045	SMG6	98	84.885	ENSHGLG00100017815	SMG6	96	89.956	Heterocephalus_glaber_male
ENSSHAG00000010045	SMG6	83	55.847	ENSIPUG00000012493	smg6	75	56.175	Ictalurus_punctatus
ENSSHAG00000010045	SMG6	98	85.581	ENSSTOG00000028127	SMG6	97	90.393	Ictidomys_tridecemlineatus
ENSSHAG00000010045	SMG6	77	81.569	ENSJJAG00000015367	Smg6	93	79.805	Jaculus_jaculus
ENSSHAG00000010045	SMG6	85	53.515	ENSKMAG00000000279	smg6	77	53.992	Kryptolebias_marmoratus
ENSSHAG00000010045	SMG6	86	52.901	ENSLBEG00000002184	smg6	76	53.574	Labrus_bergylta
ENSSHAG00000010045	SMG6	56	58.845	ENSLACG00000000806	-	98	59.582	Latimeria_chalumnae
ENSSHAG00000010045	SMG6	74	64.875	ENSLOCG00000006448	smg6	99	55.671	Lepisosteus_oculatus
ENSSHAG00000010045	SMG6	98	85.284	ENSLAFG00000001261	SMG6	98	85.284	Loxodonta_africana
ENSSHAG00000010045	SMG6	98	85.438	ENSMFAG00000003394	SMG6	98	85.438	Macaca_fascicularis
ENSSHAG00000010045	SMG6	98	85.366	ENSMMUG00000023161	SMG6	98	85.366	Macaca_mulatta
ENSSHAG00000010045	SMG6	98	81.308	ENSMNEG00000044592	SMG6	98	81.308	Macaca_nemestrina
ENSSHAG00000010045	SMG6	98	83.106	ENSMLEG00000029353	SMG6	99	83.106	Mandrillus_leucophaeus
ENSSHAG00000010045	SMG6	86	54.277	ENSMAMG00000020119	smg6	98	49.136	Mastacembelus_armatus
ENSSHAG00000010045	SMG6	71	59.158	ENSMZEG00005024736	smg6	74	55.564	Maylandia_zebra
ENSSHAG00000010045	SMG6	72	66.795	ENSMGAG00000005401	-	97	66.795	Meleagris_gallopavo
ENSSHAG00000010045	SMG6	98	86.011	ENSMICG00000012913	SMG6	98	86.011	Microcebus_murinus
ENSSHAG00000010045	SMG6	85	54.824	ENSMMOG00000010883	smg6	79	55.765	Mola_mola
ENSSHAG00000010045	SMG6	98	93.233	ENSMODG00000010622	SMG6	98	93.233	Monodelphis_domestica
ENSSHAG00000010045	SMG6	98	84.252	MGP_CAROLIEiJ_G0016729	Smg6	98	89.625	Mus_caroli
ENSSHAG00000010045	SMG6	98	84.467	ENSMUSG00000038290	Smg6	97	90.202	Mus_musculus
ENSSHAG00000010045	SMG6	98	83.966	MGP_PahariEiJ_G0017866	Smg6	98	89.337	Mus_pahari
ENSSHAG00000010045	SMG6	98	85.140	MGP_SPRETEiJ_G0017572	Smg6	98	90.202	Mus_spretus
ENSSHAG00000010045	SMG6	98	85.847	ENSMPUG00000013046	SMG6	99	85.847	Mustela_putorius_furo
ENSSHAG00000010045	SMG6	98	85.193	ENSMLUG00000005739	SMG6	98	85.193	Myotis_lucifugus
ENSSHAG00000010045	SMG6	98	84.339	ENSNGAG00000007287	Smg6	100	86.076	Nannospalax_galili
ENSSHAG00000010045	SMG6	71	58.965	ENSNBRG00000009511	smg6	81	54.531	Neolamprologus_brichardi
ENSSHAG00000010045	SMG6	98	84.786	ENSNLEG00000017171	SMG6	100	94.325	Nomascus_leucogenys
ENSSHAG00000010045	SMG6	98	90.418	ENSMEUG00000015804	SMG6	100	90.418	Notamacropus_eugenii
ENSSHAG00000010045	SMG6	62	84.163	ENSOPRG00000000579	SMG6	92	84.163	Ochotona_princeps
ENSSHAG00000010045	SMG6	98	77.419	ENSODEG00000008038	SMG6	98	77.419	Octodon_degus
ENSSHAG00000010045	SMG6	98	50.675	ENSONIG00000005594	smg6	97	52.180	Oreochromis_niloticus
ENSSHAG00000010045	SMG6	98	85.100	ENSOCUG00000013018	SMG6	98	85.172	Oryctolagus_cuniculus
ENSSHAG00000010045	SMG6	83	54.041	ENSORLG00000003317	smg6	74	54.279	Oryzias_latipes
ENSSHAG00000010045	SMG6	89	52.345	ENSORLG00020015343	smg6	79	52.683	Oryzias_latipes_hni
ENSSHAG00000010045	SMG6	89	52.083	ENSORLG00015020454	smg6	79	52.491	Oryzias_latipes_hsok
ENSSHAG00000010045	SMG6	87	52.273	ENSOMEG00000010838	smg6	78	52.914	Oryzias_melastigma
ENSSHAG00000010045	SMG6	98	85.950	ENSOGAG00000004483	SMG6	98	85.950	Otolemur_garnettii
ENSSHAG00000010045	SMG6	98	85.591	ENSOARG00000015076	SMG6	100	85.591	Ovis_aries
ENSSHAG00000010045	SMG6	98	85.438	ENSPPAG00000043296	SMG6	98	85.438	Pan_paniscus
ENSSHAG00000010045	SMG6	98	86.195	ENSPPRG00000014581	SMG6	99	86.195	Panthera_pardus
ENSSHAG00000010045	SMG6	98	86.744	ENSPTIG00000008925	SMG6	100	95.499	Panthera_tigris_altaica
ENSSHAG00000010045	SMG6	98	85.294	ENSPTRG00000008544	SMG6	100	94.129	Pan_troglodytes
ENSSHAG00000010045	SMG6	98	85.427	ENSPANG00000024588	SMG6	98	85.427	Papio_anubis
ENSSHAG00000010045	SMG6	89	71.440	ENSPSIG00000006660	SMG6	97	71.518	Pelodiscus_sinensis
ENSSHAG00000010045	SMG6	97	49.966	ENSPMGG00000000844	smg6	98	63.271	Periophthalmus_magnuspinnatus
ENSSHAG00000010045	SMG6	98	84.753	ENSPEMG00000020707	Smg6	98	89.956	Peromyscus_maniculatus_bairdii
ENSSHAG00000010045	SMG6	98	51.427	ENSPFOG00000012035	smg6	99	51.633	Poecilia_formosa
ENSSHAG00000010045	SMG6	76	56.525	ENSPLAG00000017660	smg6	74	54.581	Poecilia_latipinna
ENSSHAG00000010045	SMG6	76	56.492	ENSPMEG00000000258	smg6	74	54.917	Poecilia_mexicana
ENSSHAG00000010045	SMG6	76	56.308	ENSPREG00000010066	smg6	74	54.681	Poecilia_reticulata
ENSSHAG00000010045	SMG6	98	79.885	ENSPPYG00000007790	SMG6	98	79.885	Pongo_abelii
ENSSHAG00000010045	SMG6	98	81.407	ENSPCAG00000000552	SMG6	98	81.407	Procavia_capensis
ENSSHAG00000010045	SMG6	98	85.438	ENSPCOG00000020925	SMG6	98	85.438	Propithecus_coquereli
ENSSHAG00000010045	SMG6	84	84.945	ENSPVAG00000002159	SMG6	84	84.945	Pteropus_vampyrus
ENSSHAG00000010045	SMG6	71	61.312	ENSPNYG00000024151	smg6	79	57.385	Pundamilia_nyererei
ENSSHAG00000010045	SMG6	84	53.302	ENSPNAG00000015480	smg6	98	49.247	Pygocentrus_nattereri
ENSSHAG00000010045	SMG6	98	85.151	ENSRNOG00000003041	Smg6	97	90.202	Rattus_norvegicus
ENSSHAG00000010045	SMG6	98	85.222	ENSRBIG00000024746	SMG6	98	85.222	Rhinopithecus_bieti
ENSSHAG00000010045	SMG6	98	85.222	ENSRROG00000030423	SMG6	100	93.542	Rhinopithecus_roxellana
ENSSHAG00000010045	SMG6	98	84.792	ENSSBOG00000022518	SMG6	98	83.286	Saimiri_boliviensis_boliviensis
ENSSHAG00000010045	SMG6	72	62.908	ENSSFOG00015005436	smg6	70	58.386	Scleropages_formosus
ENSSHAG00000010045	SMG6	83	54.871	ENSSMAG00000019777	smg6	73	55.183	Scophthalmus_maximus
ENSSHAG00000010045	SMG6	83	55.321	ENSSDUG00000016412	smg6	74	55.582	Seriola_dumerili
ENSSHAG00000010045	SMG6	80	54.612	ENSSLDG00000020747	smg6	77	54.737	Seriola_lalandi_dorsalis
ENSSHAG00000010045	SMG6	97	71.418	ENSSPUG00000007152	SMG6	98	71.418	Sphenodon_punctatus
ENSSHAG00000010045	SMG6	71	59.028	ENSSPAG00000015633	smg6	74	55.145	Stegastes_partitus
ENSSHAG00000010045	SMG6	98	84.989	ENSSSCG00000017826	SMG6	99	85.129	Sus_scrofa
ENSSHAG00000010045	SMG6	98	72.662	ENSTGUG00000005836	SMG6	98	72.877	Taeniopygia_guttata
ENSSHAG00000010045	SMG6	83	54.777	ENSTRUG00000000358	smg6	81	55.255	Takifugu_rubripes
ENSSHAG00000010045	SMG6	98	50.033	ENSTNIG00000016164	smg6	98	50.569	Tetraodon_nigroviridis
ENSSHAG00000010045	SMG6	98	81.062	ENSTBEG00000011424	SMG6	98	81.062	Tupaia_belangeri
ENSSHAG00000010045	SMG6	89	88.333	ENSTTRG00000001175	SMG6	89	88.333	Tursiops_truncatus
ENSSHAG00000010045	SMG6	98	86.341	ENSUAMG00000025152	SMG6	100	86.341	Ursus_americanus
ENSSHAG00000010045	SMG6	98	86.383	ENSUMAG00000009306	SMG6	100	86.383	Ursus_maritimus
ENSSHAG00000010045	SMG6	83	96.296	ENSVPAG00000000225	SMG6	86	96.296	Vicugna_pacos
ENSSHAG00000010045	SMG6	98	85.347	ENSVVUG00000021727	SMG6	99	85.347	Vulpes_vulpes
ENSSHAG00000010045	SMG6	98	59.410	ENSXETG00000023799	SMG6	100	60.141	Xenopus_tropicalis
ENSSHAG00000010045	SMG6	73	59.561	ENSXCOG00000009867	smg6	76	54.595	Xiphophorus_couchianus
ENSSHAG00000010045	SMG6	85	53.805	ENSXMAG00000010321	smg6	76	54.128	Xiphophorus_maculatus