EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000010499 (Gene tree)
Gene ID: 100929203
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 30194 bases
Position: chrGL841420.1:697427-727620
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000012247	UPF1_Zn_bind	PF09416.10	4.6e-75	1	1
ENSSHAP00000012247	ResIII	PF04851.15	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000012346	UPF1-201	3165	-	ENSSHAP00000012247	1053 (aa)	-	G3W9Z2

Gene Model

Click here to download ENSSHAG00000010499's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03013	RNA transport	KEGG
shr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000010499's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000010499	UPF1	100	98.860	ENSG00000005007	UPF1	93	98.860	Homo_sapiens
ENSSHAG00000010499	UPF1	100	93.744	ENSAPOG00000010916	-	95	93.839	Acanthochromis_polyacanthus
ENSSHAG00000010499	UPF1	100	92.628	ENSAPOG00000023773	upf1	95	92.817	Acanthochromis_polyacanthus
ENSSHAG00000010499	UPF1	100	99.050	ENSAMEG00000011474	UPF1	93	99.050	Ailuropoda_melanoleuca
ENSSHAG00000010499	UPF1	99	93.642	ENSACIG00000010985	-	100	93.738	Amphilophus_citrinellus
ENSSHAG00000010499	UPF1	100	92.783	ENSACIG00000019949	upf1	95	92.817	Amphilophus_citrinellus
ENSSHAG00000010499	UPF1	100	92.118	ENSAOCG00000018519	upf1	95	92.797	Amphiprion_ocellaris
ENSSHAG00000010499	UPF1	100	93.649	ENSAOCG00000006352	-	100	91.154	Amphiprion_ocellaris
ENSSHAG00000010499	UPF1	100	92.118	ENSAPEG00000016344	upf1	95	92.797	Amphiprion_percula
ENSSHAG00000010499	UPF1	100	93.649	ENSAPEG00000006292	-	100	91.154	Amphiprion_percula
ENSSHAG00000010499	UPF1	100	93.839	ENSATEG00000016606	-	95	93.934	Anabas_testudineus
ENSSHAG00000010499	UPF1	100	91.410	ENSATEG00000017867	upf1	95	92.344	Anabas_testudineus
ENSSHAG00000010499	UPF1	100	98.670	ENSAPLG00000009175	UPF1	99	98.670	Anas_platyrhynchos
ENSSHAG00000010499	UPF1	100	97.531	ENSANAG00000024107	UPF1	95	97.531	Aotus_nancymaae
ENSSHAG00000010499	UPF1	100	92.593	ENSACLG00000007181	upf1	95	92.628	Astatotilapia_calliptera
ENSSHAG00000010499	UPF1	100	93.548	ENSACLG00000022630	-	95	93.548	Astatotilapia_calliptera
ENSSHAG00000010499	UPF1	100	94.408	ENSAMXG00000042187	upf1	95	94.976	Astyanax_mexicanus
ENSSHAG00000010499	UPF1	100	99.050	ENSBTAG00000020922	UPF1	93	99.050	Bos_taurus
ENSSHAG00000010499	UPF1	85	53.493	WBGene00004880	smg-2	90	50.682	Caenorhabditis_elegans
ENSSHAG00000010499	UPF1	100	98.860	ENSCJAG00000019627	UPF1	93	98.860	Callithrix_jacchus
ENSSHAG00000010499	UPF1	100	99.050	ENSCAFG00000014578	UPF1	93	99.050	Canis_familiaris
ENSSHAG00000010499	UPF1	100	98.006	ENSCAFG00020012347	UPF1	93	98.006	Canis_lupus_dingo
ENSSHAG00000010499	UPF1	100	99.050	ENSCHIG00000011018	UPF1	93	99.050	Capra_hircus
ENSSHAG00000010499	UPF1	100	98.670	ENSTSYG00000008877	UPF1	98	98.670	Carlito_syrichta
ENSSHAG00000010499	UPF1	100	97.816	ENSCAPG00000005758	UPF1	95	97.816	Cavia_aperea
ENSSHAG00000010499	UPF1	99	97.905	ENSCPOG00000025463	UPF1	94	97.905	Cavia_porcellus
ENSSHAG00000010499	UPF1	100	98.860	ENSCCAG00000032175	UPF1	94	98.860	Cebus_capucinus
ENSSHAG00000010499	UPF1	100	98.765	ENSCATG00000040306	UPF1	98	98.765	Cercocebus_atys
ENSSHAG00000010499	UPF1	100	98.670	ENSCLAG00000004037	UPF1	99	98.670	Chinchilla_lanigera
ENSSHAG00000010499	UPF1	100	97.816	ENSCSAG00000005276	UPF1	93	97.816	Chlorocebus_sabaeus
ENSSHAG00000010499	UPF1	100	97.917	ENSCPBG00000012513	UPF1	94	97.917	Chrysemys_picta_bellii
ENSSHAG00000010499	UPF1	74	82.285	ENSCING00000021399	-	91	82.285	Ciona_intestinalis
ENSSHAG00000010499	UPF1	99	73.088	ENSCSAVG00000006533	-	94	73.088	Ciona_savignyi
ENSSHAG00000010499	UPF1	100	98.860	ENSCANG00000029819	UPF1	97	98.860	Colobus_angolensis_palliatus
ENSSHAG00000010499	UPF1	100	97.246	ENSCGRG00001021067	Upf1	93	97.246	Cricetulus_griseus_chok1gshd
ENSSHAG00000010499	UPF1	100	98.291	ENSCGRG00000013480	Upf1	98	98.291	Cricetulus_griseus_crigri
ENSSHAG00000010499	UPF1	100	87.204	ENSCSEG00000017239	upf1	94	87.631	Cynoglossus_semilaevis
ENSSHAG00000010499	UPF1	100	94.023	ENSCSEG00000016159	-	95	94.023	Cynoglossus_semilaevis
ENSSHAG00000010499	UPF1	100	93.649	ENSCVAG00000010561	upf1	95	93.649	Cyprinodon_variegatus
ENSSHAG00000010499	UPF1	100	94.408	ENSDARG00000016302	upf1	95	94.976	Danio_rerio
ENSSHAG00000010499	UPF1	100	95.825	ENSDORG00000009984	Upf1	95	95.825	Dipodomys_ordii
ENSSHAG00000010499	UPF1	84	73.467	FBgn0030354	Upf1	80	70.062	Drosophila_melanogaster
ENSSHAG00000010499	UPF1	52	88.727	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSSHAG00000010499	UPF1	100	97.911	ENSEASG00005006549	UPF1	93	97.911	Equus_asinus_asinus
ENSSHAG00000010499	UPF1	100	97.911	ENSECAG00000010639	UPF1	93	97.911	Equus_caballus
ENSSHAG00000010499	UPF1	100	93.025	ENSELUG00000012916	-	95	93.032	Esox_lucius
ENSSHAG00000010499	UPF1	100	91.698	ENSELUG00000020917	upf1	95	91.981	Esox_lucius
ENSSHAG00000010499	UPF1	100	98.955	ENSFCAG00000009757	UPF1	93	98.955	Felis_catus
ENSSHAG00000010499	UPF1	100	97.729	ENSFALG00000009312	UPF1	96	97.729	Ficedula_albicollis
ENSSHAG00000010499	UPF1	100	98.575	ENSFDAG00000014816	UPF1	99	98.575	Fukomys_damarensis
ENSSHAG00000010499	UPF1	100	89.831	ENSFHEG00000006428	upf1	94	89.831	Fundulus_heteroclitus
ENSSHAG00000010499	UPF1	91	93.309	ENSFHEG00000016276	-	96	93.490	Fundulus_heteroclitus
ENSSHAG00000010499	UPF1	100	93.365	ENSGMOG00000007541	upf1	95	93.934	Gadus_morhua
ENSSHAG00000010499	UPF1	100	98.386	ENSGALG00000003220	UPF1	93	98.386	Gallus_gallus
ENSSHAG00000010499	UPF1	100	93.454	ENSGAFG00000004831	upf1	95	93.454	Gambusia_affinis
ENSSHAG00000010499	UPF1	67	93.777	ENSGAFG00000015443	-	85	93.777	Gambusia_affinis
ENSSHAG00000010499	UPF1	100	98.291	ENSGAGG00000022217	UPF1	94	98.291	Gopherus_agassizii
ENSSHAG00000010499	UPF1	100	97.816	ENSGGOG00000002608	UPF1	99	97.816	Gorilla_gorilla
ENSSHAG00000010499	UPF1	86	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSSHAG00000010499	UPF1	86	87.356	ENSHBUG00000014694	upf1	90	87.356	Haplochromis_burtoni
ENSSHAG00000010499	UPF1	100	98.386	ENSHGLG00000010900	UPF1	93	98.386	Heterocephalus_glaber_female
ENSSHAG00000010499	UPF1	100	96.676	ENSHGLG00100005904	UPF1	96	96.676	Heterocephalus_glaber_male
ENSSHAG00000010499	UPF1	100	92.600	ENSHCOG00000008918	upf1	100	92.646	Hippocampus_comes
ENSSHAG00000010499	UPF1	100	94.502	ENSIPUG00000005108	UPF1	95	94.976	Ictalurus_punctatus
ENSSHAG00000010499	UPF1	100	98.670	ENSSTOG00000009196	UPF1	94	98.670	Ictidomys_tridecemlineatus
ENSSHAG00000010499	UPF1	100	98.101	ENSJJAG00000023151	Upf1	94	98.101	Jaculus_jaculus
ENSSHAG00000010499	UPF1	100	93.649	ENSKMAG00000004962	upf1	95	93.649	Kryptolebias_marmoratus
ENSSHAG00000010499	UPF1	100	93.555	ENSLBEG00000027848	-	95	93.649	Labrus_bergylta
ENSSHAG00000010499	UPF1	100	90.833	ENSLBEG00000014862	upf1	95	92.142	Labrus_bergylta
ENSSHAG00000010499	UPF1	66	97.139	ENSLACG00000008482	UPF1	100	97.139	Latimeria_chalumnae
ENSSHAG00000010499	UPF1	100	96.300	ENSLOCG00000002072	upf1	95	96.300	Lepisosteus_oculatus
ENSSHAG00000010499	UPF1	100	98.481	ENSLAFG00000014963	UPF1	93	98.481	Loxodonta_africana
ENSSHAG00000010499	UPF1	100	98.860	ENSMFAG00000037748	UPF1	94	98.860	Macaca_fascicularis
ENSSHAG00000010499	UPF1	100	98.860	ENSMMUG00000023286	UPF1	94	98.860	Macaca_mulatta
ENSSHAG00000010499	UPF1	100	98.860	ENSMNEG00000000046	UPF1	94	98.860	Macaca_nemestrina
ENSSHAG00000010499	UPF1	100	98.860	ENSMLEG00000028404	UPF1	99	98.860	Mandrillus_leucophaeus
ENSSHAG00000010499	UPF1	100	91.130	ENSMAMG00000006229	upf1	95	92.250	Mastacembelus_armatus
ENSSHAG00000010499	UPF1	100	93.081	ENSMAMG00000006231	-	95	93.649	Mastacembelus_armatus
ENSSHAG00000010499	UPF1	100	91.045	ENSMZEG00005003489	upf1	95	92.402	Maylandia_zebra
ENSSHAG00000010499	UPF1	100	93.548	ENSMZEG00005016386	-	95	93.548	Maylandia_zebra
ENSSHAG00000010499	UPF1	100	98.197	ENSMGAG00000004745	UPF1	100	98.197	Meleagris_gallopavo
ENSSHAG00000010499	UPF1	100	98.291	ENSMAUG00000011398	Upf1	95	98.291	Mesocricetus_auratus
ENSSHAG00000010499	UPF1	100	97.721	ENSMICG00000001659	UPF1	93	97.721	Microcebus_murinus
ENSSHAG00000010499	UPF1	100	98.291	ENSMOCG00000005699	Upf1	94	98.291	Microtus_ochrogaster
ENSSHAG00000010499	UPF1	99	92.198	ENSMMOG00000007881	upf1	94	92.681	Mola_mola
ENSSHAG00000010499	UPF1	100	91.564	ENSMMOG00000007537	-	99	91.659	Mola_mola
ENSSHAG00000010499	UPF1	100	99.715	ENSMODG00000003689	UPF1	95	98.670	Monodelphis_domestica
ENSSHAG00000010499	UPF1	100	92.257	ENSMALG00000018100	-	95	92.351	Monopterus_albus
ENSSHAG00000010499	UPF1	100	92.213	ENSMALG00000000144	upf1	95	92.593	Monopterus_albus
ENSSHAG00000010499	UPF1	100	98.196	MGP_CAROLIEiJ_G0031142	Upf1	94	98.196	Mus_caroli
ENSSHAG00000010499	UPF1	100	98.196	ENSMUSG00000058301	Upf1	94	98.196	Mus_musculus
ENSSHAG00000010499	UPF1	100	98.196	MGP_PahariEiJ_G0021607	Upf1	94	98.196	Mus_pahari
ENSSHAG00000010499	UPF1	100	98.196	MGP_SPRETEiJ_G0032260	Upf1	94	98.196	Mus_spretus
ENSSHAG00000010499	UPF1	100	98.006	ENSMPUG00000015516	UPF1	93	98.006	Mustela_putorius_furo
ENSSHAG00000010499	UPF1	100	97.816	ENSMLUG00000012122	UPF1	93	97.816	Myotis_lucifugus
ENSSHAG00000010499	UPF1	100	98.196	ENSNGAG00000024107	Upf1	93	98.196	Nannospalax_galili
ENSSHAG00000010499	UPF1	99	92.610	ENSNBRG00000022069	-	100	92.610	Neolamprologus_brichardi
ENSSHAG00000010499	UPF1	100	90.788	ENSNBRG00000000670	upf1	95	90.832	Neolamprologus_brichardi
ENSSHAG00000010499	UPF1	100	93.067	ENSNLEG00000006062	UPF1	99	93.067	Nomascus_leucogenys
ENSSHAG00000010499	UPF1	82	95.312	ENSMEUG00000014146	-	76	95.312	Notamacropus_eugenii
ENSSHAG00000010499	UPF1	100	90.028	ENSOPRG00000014018	UPF1	99	90.028	Ochotona_princeps
ENSSHAG00000010499	UPF1	100	98.575	ENSODEG00000012426	UPF1	95	98.575	Octodon_degus
ENSSHAG00000010499	UPF1	100	91.325	ENSONIG00000010452	upf1	95	92.683	Oreochromis_niloticus
ENSSHAG00000010499	UPF1	100	93.643	ENSONIG00000012729	-	95	93.643	Oreochromis_niloticus
ENSSHAG00000010499	UPF1	100	98.860	ENSOANG00000004568	UPF1	93	98.860	Ornithorhynchus_anatinus
ENSSHAG00000010499	UPF1	100	93.365	ENSORLG00000008453	upf1	95	93.365	Oryzias_latipes
ENSSHAG00000010499	UPF1	100	93.365	ENSORLG00020014758	upf1	95	93.365	Oryzias_latipes_hni
ENSSHAG00000010499	UPF1	100	93.365	ENSORLG00015010165	upf1	100	89.423	Oryzias_latipes_hsok
ENSSHAG00000010499	UPF1	100	93.460	ENSOMEG00000003665	upf1	95	93.460	Oryzias_melastigma
ENSSHAG00000010499	UPF1	100	97.911	ENSOGAG00000012866	UPF1	93	97.911	Otolemur_garnettii
ENSSHAG00000010499	UPF1	96	98.622	ENSOARG00000010739	UPF1	93	98.622	Ovis_aries
ENSSHAG00000010499	UPF1	100	98.860	ENSPPAG00000043884	UPF1	96	98.860	Pan_paniscus
ENSSHAG00000010499	UPF1	100	98.955	ENSPPRG00000023470	UPF1	93	98.955	Panthera_pardus
ENSSHAG00000010499	UPF1	100	95.821	ENSPTIG00000010159	UPF1	99	95.821	Panthera_tigris_altaica
ENSSHAG00000010499	UPF1	100	98.860	ENSPTRG00000010721	UPF1	94	98.860	Pan_troglodytes
ENSSHAG00000010499	UPF1	100	98.860	ENSPANG00000008847	UPF1	94	98.860	Papio_anubis
ENSSHAG00000010499	UPF1	90	96.432	ENSPKIG00000006069	upf1	91	96.432	Paramormyrops_kingsleyae
ENSSHAG00000010499	UPF1	73	98.305	ENSPSIG00000009491	UPF1	100	98.305	Pelodiscus_sinensis
ENSSHAG00000010499	UPF1	99	90.350	ENSPMGG00000017327	upf1	95	90.557	Periophthalmus_magnuspinnatus
ENSSHAG00000010499	UPF1	100	98.291	ENSPEMG00000001085	Upf1	94	98.291	Peromyscus_maniculatus_bairdii
ENSSHAG00000010499	UPF1	100	89.089	ENSPMAG00000001206	upf1	94	89.089	Petromyzon_marinus
ENSSHAG00000010499	UPF1	100	98.670	ENSPCIG00000006156	UPF1	93	98.670	Phascolarctos_cinereus
ENSSHAG00000010499	UPF1	100	93.548	ENSPLAG00000016232	-	95	93.548	Poecilia_latipinna
ENSSHAG00000010499	UPF1	100	90.789	ENSPLAG00000018155	-	95	90.789	Poecilia_latipinna
ENSSHAG00000010499	UPF1	100	91.383	ENSPMEG00000011443	-	95	91.383	Poecilia_mexicana
ENSSHAG00000010499	UPF1	100	93.643	ENSPMEG00000016319	-	95	93.643	Poecilia_mexicana
ENSSHAG00000010499	UPF1	100	93.359	ENSPREG00000011247	-	95	93.359	Poecilia_reticulata
ENSSHAG00000010499	UPF1	100	91.353	ENSPREG00000009940	upf1	94	91.353	Poecilia_reticulata
ENSSHAG00000010499	UPF1	100	93.542	ENSPPYG00000009752	UPF1	93	93.542	Pongo_abelii
ENSSHAG00000010499	UPF1	70	99.331	ENSPCAG00000012962	UPF1	65	99.331	Procavia_capensis
ENSSHAG00000010499	UPF1	100	98.955	ENSPCOG00000023813	UPF1	94	98.955	Propithecus_coquereli
ENSSHAG00000010499	UPF1	66	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSSHAG00000010499	UPF1	100	91.045	ENSPNYG00000003694	upf1	95	92.402	Pundamilia_nyererei
ENSSHAG00000010499	UPF1	100	93.643	ENSPNYG00000016731	-	95	93.643	Pundamilia_nyererei
ENSSHAG00000010499	UPF1	100	94.976	ENSPNAG00000025614	upf1	95	94.976	Pygocentrus_nattereri
ENSSHAG00000010499	UPF1	100	98.196	ENSRNOG00000020134	Upf1	94	98.196	Rattus_norvegicus
ENSSHAG00000010499	UPF1	100	96.486	ENSRBIG00000013894	UPF1	98	97.516	Rhinopithecus_bieti
ENSSHAG00000010499	UPF1	100	98.860	ENSRROG00000040935	UPF1	97	98.860	Rhinopithecus_roxellana
ENSSHAG00000010499	UPF1	78	56.333	YMR080C	NAM7	84	56.333	Saccharomyces_cerevisiae
ENSSHAG00000010499	UPF1	99	98.859	ENSSBOG00000023632	UPF1	96	98.859	Saimiri_boliviensis_boliviensis
ENSSHAG00000010499	UPF1	100	96.490	ENSSFOG00015021095	upf1	99	96.395	Scleropages_formosus
ENSSHAG00000010499	UPF1	100	90.365	ENSSMAG00000005055	upf1	95	91.402	Scophthalmus_maximus
ENSSHAG00000010499	UPF1	100	93.649	ENSSMAG00000021018	-	95	93.744	Scophthalmus_maximus
ENSSHAG00000010499	UPF1	100	94.028	ENSSDUG00000009629	-	95	94.123	Seriola_dumerili
ENSSHAG00000010499	UPF1	100	91.317	ENSSDUG00000013320	upf1	95	92.437	Seriola_dumerili
ENSSHAG00000010499	UPF1	100	94.028	ENSSLDG00000006878	-	95	94.123	Seriola_lalandi_dorsalis
ENSSHAG00000010499	UPF1	100	92.177	ENSSLDG00000020868	upf1	95	92.756	Seriola_lalandi_dorsalis
ENSSHAG00000010499	UPF1	100	98.196	ENSSPUG00000010538	UPF1	94	98.196	Sphenodon_punctatus
ENSSHAG00000010499	UPF1	100	90.417	ENSSPAG00000000003	upf1	95	90.445	Stegastes_partitus
ENSSHAG00000010499	UPF1	100	93.643	ENSSPAG00000011521	-	95	93.643	Stegastes_partitus
ENSSHAG00000010499	UPF1	100	98.955	ENSSSCG00000039301	UPF1	99	97.911	Sus_scrofa
ENSSHAG00000010499	UPF1	82	91.445	ENSTGUG00000001057	UPF1	89	97.663	Taeniopygia_guttata
ENSSHAG00000010499	UPF1	100	92.694	ENSTRUG00000005131	-	95	92.789	Takifugu_rubripes
ENSSHAG00000010499	UPF1	100	92.213	ENSTRUG00000000150	upf1	95	92.213	Takifugu_rubripes
ENSSHAG00000010499	UPF1	100	93.922	ENSTTRG00000011544	UPF1	93	93.922	Tursiops_truncatus
ENSSHAG00000010499	UPF1	100	97.911	ENSUAMG00000007093	UPF1	93	97.911	Ursus_americanus
ENSSHAG00000010499	UPF1	100	98.955	ENSUMAG00000006652	UPF1	98	98.955	Ursus_maritimus
ENSSHAG00000010499	UPF1	100	98.006	ENSVVUG00000007797	UPF1	93	98.006	Vulpes_vulpes
ENSSHAG00000010499	UPF1	100	83.917	ENSXETG00000013602	upf1	93	83.917	Xenopus_tropicalis
ENSSHAG00000010499	UPF1	96	91.052	ENSXCOG00000015275	-	91	91.052	Xiphophorus_couchianus
ENSSHAG00000010499	UPF1	99	93.678	ENSXCOG00000005764	-	100	93.678	Xiphophorus_couchianus
ENSSHAG00000010499	UPF1	100	91.271	ENSXMAG00000001703	-	95	91.271	Xiphophorus_maculatus
ENSSHAG00000010499	UPF1	100	93.454	ENSXMAG00000002540	-	95	93.454	Xiphophorus_maculatus