EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000011376 (Gene tree)
Gene ID: 100925326
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 22998 bases
Position: chrGL841505.1:840795-863792
Accession: 100925326
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000013307	PPR	PF01535.20	1.3e-12	1	2
ENSSHAP00000013307	PPR	PF01535.20	1.3e-12	2	2
ENSSHAP00000013306	PPR	PF01535.20	5.8e-12	1	2
ENSSHAP00000013306	PPR	PF01535.20	5.8e-12	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000013416	-	2163	-	ENSSHAP00000013307	655 (aa)	-	G3WD02
ENSSHAT00000013415	-	2211	-	ENSSHAP00000013306	736 (aa)	XP_012398298	G3WD01

Gene Model

Click here to download ENSSHAG00000011376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000011376's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000011376	-	99	61.728	ENSG00000248919	ATP5MF-PTCD1	86	61.728	Homo_sapiens
ENSSHAG00000011376	-	98	61.957	ENSG00000106246	PTCD1	98	56.749	Homo_sapiens
ENSSHAG00000011376	-	84	47.027	ENSAPOG00000010679	ptcd1	85	46.942	Acanthochromis_polyacanthus
ENSSHAG00000011376	-	97	62.133	ENSAMEG00000006224	-	91	57.400	Ailuropoda_melanoleuca
ENSSHAG00000011376	-	92	46.569	ENSACIG00000017861	ptcd1	87	46.569	Amphilophus_citrinellus
ENSSHAG00000011376	-	89	48.718	ENSAOCG00000020741	-	85	45.683	Amphiprion_ocellaris
ENSSHAG00000011376	-	85	48.214	ENSAOCG00000022617	ptcd1	82	48.214	Amphiprion_ocellaris
ENSSHAG00000011376	-	89	48.547	ENSAPEG00000022632	ptcd1	85	47.145	Amphiprion_percula
ENSSHAG00000011376	-	92	47.308	ENSATEG00000007016	ptcd1	80	48.061	Anabas_testudineus
ENSSHAG00000011376	-	92	61.386	ENSAPLG00000006862	-	95	60.912	Anas_platyrhynchos
ENSSHAG00000011376	-	96	56.698	ENSACAG00000012871	-	89	53.286	Anolis_carolinensis
ENSSHAG00000011376	-	94	63.520	ENSANAG00000035790	-	99	57.639	Aotus_nancymaae
ENSSHAG00000011376	-	88	47.088	ENSACLG00000002824	ptcd1	84	45.899	Astatotilapia_calliptera
ENSSHAG00000011376	-	93	48.362	ENSAMXG00000037292	ptcd1	98	45.634	Astyanax_mexicanus
ENSSHAG00000011376	-	99	61.256	ENSBTAG00000020440	-	86	57.162	Bos_taurus
ENSSHAG00000011376	-	93	63.489	ENSCJAG00000015815	-	99	56.410	Callithrix_jacchus
ENSSHAG00000011376	-	96	63.665	ENSCAFG00000015055	-	92	57.766	Canis_familiaris
ENSSHAG00000011376	-	99	62.290	ENSCAFG00020014480	-	92	57.902	Canis_lupus_dingo
ENSSHAG00000011376	-	98	61.103	ENSCHIG00000027000	-	97	57.221	Capra_hircus
ENSSHAG00000011376	-	92	63.725	ENSTSYG00000029495	-	99	57.375	Carlito_syrichta
ENSSHAG00000011376	-	92	64.590	ENSCAPG00000014660	-	98	62.100	Cavia_aperea
ENSSHAG00000011376	-	99	63.070	ENSCPOG00000001780	-	98	58.435	Cavia_porcellus
ENSSHAG00000011376	-	97	61.905	ENSCCAG00000034025	-	99	56.815	Cebus_capucinus
ENSSHAG00000011376	-	98	61.137	ENSCATG00000040859	-	98	56.985	Cercocebus_atys
ENSSHAG00000011376	-	98	62.232	ENSCLAG00000006354	-	98	58.390	Chinchilla_lanigera
ENSSHAG00000011376	-	92	57.312	ENSCSAG00000017794	-	95	56.721	Chlorocebus_sabaeus
ENSSHAG00000011376	-	99	57.372	ENSCPBG00000020866	-	100	55.422	Chrysemys_picta_bellii
ENSSHAG00000011376	-	89	31.658	ENSCING00000007717	-	98	31.940	Ciona_intestinalis
ENSSHAG00000011376	-	98	62.364	ENSCANG00000023441	-	98	56.846	Colobus_angolensis_palliatus
ENSSHAG00000011376	-	96	61.695	ENSCGRG00001023686	Ptcd1	95	58.737	Cricetulus_griseus_chok1gshd
ENSSHAG00000011376	-	96	61.695	ENSCGRG00000015031	Ptcd1	99	56.054	Cricetulus_griseus_crigri
ENSSHAG00000011376	-	94	44.866	ENSCSEG00000002378	ptcd1	91	42.692	Cynoglossus_semilaevis
ENSSHAG00000011376	-	93	47.334	ENSCVAG00000015826	ptcd1	86	47.334	Cyprinodon_variegatus
ENSSHAG00000011376	-	91	47.833	ENSCVAG00000003621	ptcd1	88	47.833	Cyprinodon_variegatus
ENSSHAG00000011376	-	91	50.327	ENSDARG00000076176	ptcd1	87	50.327	Danio_rerio
ENSSHAG00000011376	-	93	62.802	ENSDNOG00000009957	-	99	56.563	Dasypus_novemcinctus
ENSSHAG00000011376	-	99	55.374	ENSDORG00000000740	Ptcd1	99	55.646	Dipodomys_ordii
ENSSHAG00000011376	-	97	39.712	ENSEBUG00000014515	ptcd1	99	41.098	Eptatretus_burgeri
ENSSHAG00000011376	-	98	62.691	ENSEASG00005002480	-	98	58.550	Equus_asinus_asinus
ENSSHAG00000011376	-	98	62.997	ENSECAG00000016617	-	98	58.824	Equus_caballus
ENSSHAG00000011376	-	97	42.857	ENSELUG00000016517	ptcd1	91	42.857	Esox_lucius
ENSSHAG00000011376	-	99	61.854	ENSFCAG00000015069	-	99	56.931	Felis_catus
ENSSHAG00000011376	-	93	58.852	ENSFALG00000013803	-	88	59.219	Ficedula_albicollis
ENSSHAG00000011376	-	96	63.679	ENSFDAG00000006393	-	99	58.288	Fukomys_damarensis
ENSSHAG00000011376	-	78	47.674	ENSFHEG00000012491	ptcd1	87	47.674	Fundulus_heteroclitus
ENSSHAG00000011376	-	92	45.320	ENSGMOG00000007639	ptcd1	95	45.320	Gadus_morhua
ENSSHAG00000011376	-	92	59.742	ENSGALG00000004711	-	88	59.718	Gallus_gallus
ENSSHAG00000011376	-	92	47.154	ENSGAFG00000013175	ptcd1	84	47.533	Gambusia_affinis
ENSSHAG00000011376	-	94	46.252	ENSGACG00000016607	ptcd1	95	45.496	Gasterosteus_aculeatus
ENSSHAG00000011376	-	91	58.266	ENSGAGG00000021832	-	99	55.912	Gopherus_agassizii
ENSSHAG00000011376	-	99	61.728	ENSGGOG00000015123	-	98	56.985	Gorilla_gorilla
ENSSHAG00000011376	-	88	47.088	ENSHBUG00000018275	ptcd1	84	45.899	Haplochromis_burtoni
ENSSHAG00000011376	-	99	62.443	ENSHGLG00000017621	-	99	58.550	Heterocephalus_glaber_female
ENSSHAG00000011376	-	99	62.443	ENSHGLG00100007218	-	99	58.550	Heterocephalus_glaber_male
ENSSHAG00000011376	-	92	45.124	ENSHCOG00000010784	ptcd1	85	45.620	Hippocampus_comes
ENSSHAG00000011376	-	96	61.381	ENSSTOG00000001682	-	97	57.438	Ictidomys_tridecemlineatus
ENSSHAG00000011376	-	94	62.258	ENSJJAG00000000319	Ptcd1	99	55.738	Jaculus_jaculus
ENSSHAG00000011376	-	88	47.513	ENSKMAG00000008708	ptcd1	80	48.034	Kryptolebias_marmoratus
ENSSHAG00000011376	-	89	46.231	ENSLBEG00000008061	ptcd1	86	45.101	Labrus_bergylta
ENSSHAG00000011376	-	92	56.078	ENSLACG00000011172	ptcd1	85	56.078	Latimeria_chalumnae
ENSSHAG00000011376	-	96	54.009	ENSLOCG00000004833	ptcd1	97	53.025	Lepisosteus_oculatus
ENSSHAG00000011376	-	93	61.859	ENSLAFG00000002588	-	99	55.780	Loxodonta_africana
ENSSHAG00000011376	-	98	61.883	ENSMFAG00000041324	-	98	57.261	Macaca_fascicularis
ENSSHAG00000011376	-	98	61.883	ENSMMUG00000030408	-	98	57.261	Macaca_mulatta
ENSSHAG00000011376	-	98	61.574	ENSMNEG00000043786	-	98	56.985	Macaca_nemestrina
ENSSHAG00000011376	-	98	44.753	ENSMLEG00000031179	-	97	43.154	Mandrillus_leucophaeus
ENSSHAG00000011376	-	93	46.805	ENSMAMG00000007623	ptcd1	84	46.805	Mastacembelus_armatus
ENSSHAG00000011376	-	93	46.400	ENSMZEG00005012722	ptcd1	84	46.400	Maylandia_zebra
ENSSHAG00000011376	-	98	57.557	ENSMGAG00000004211	-	85	57.557	Meleagris_gallopavo
ENSSHAG00000011376	-	98	61.824	ENSMICG00000017428	-	91	62.442	Microcebus_murinus
ENSSHAG00000011376	-	88	46.644	ENSMMOG00000020243	ptcd1	87	46.644	Mola_mola
ENSSHAG00000011376	-	100	77.185	ENSMODG00000001350	-	100	76.892	Monodelphis_domestica
ENSSHAG00000011376	-	90	46.458	ENSMALG00000018442	ptcd1	81	46.819	Monopterus_albus
ENSSHAG00000011376	-	93	61.688	MGP_CAROLIEiJ_G0028011	Ptcd1	87	61.688	Mus_caroli
ENSSHAG00000011376	-	99	59.293	ENSMUSG00000029624	Ptcd1	92	59.174	Mus_musculus
ENSSHAG00000011376	-	93	62.114	MGP_PahariEiJ_G0024580	Ptcd1	99	55.846	Mus_pahari
ENSSHAG00000011376	-	99	59.939	MGP_SPRETEiJ_G0029012	Ptcd1	99	55.074	Mus_spretus
ENSSHAG00000011376	-	93	62.981	ENSMPUG00000016518	-	99	57.182	Mustela_putorius_furo
ENSSHAG00000011376	-	98	59.010	ENSMLUG00000010994	-	92	59.147	Myotis_lucifugus
ENSSHAG00000011376	-	91	47.421	ENSNBRG00000010079	ptcd1	85	47.421	Neolamprologus_brichardi
ENSSHAG00000011376	-	85	62.522	ENSNLEG00000011060	-	93	62.522	Nomascus_leucogenys
ENSSHAG00000011376	-	98	79.045	ENSMEUG00000006930	-	99	75.310	Notamacropus_eugenii
ENSSHAG00000011376	-	83	69.291	ENSOPRG00000013647	-	81	62.092	Ochotona_princeps
ENSSHAG00000011376	-	93	44.444	ENSONIG00000003168	ptcd1	99	44.532	Oreochromis_niloticus
ENSSHAG00000011376	-	86	58.304	ENSOANG00000007728	-	75	58.733	Ornithorhynchus_anatinus
ENSSHAG00000011376	-	93	62.119	ENSOCUG00000010584	-	98	56.005	Oryctolagus_cuniculus
ENSSHAG00000011376	-	88	48.393	ENSORLG00000009275	ptcd1	83	48.393	Oryzias_latipes
ENSSHAG00000011376	-	88	47.466	ENSORLG00020000988	ptcd1	83	47.993	Oryzias_latipes_hni
ENSSHAG00000011376	-	88	47.885	ENSORLG00015010557	ptcd1	88	45.972	Oryzias_latipes_hsok
ENSSHAG00000011376	-	88	47.288	ENSOMEG00000020627	ptcd1	85	47.288	Oryzias_melastigma
ENSSHAG00000011376	-	98	61.479	ENSOGAG00000010877	-	92	60.823	Otolemur_garnettii
ENSSHAG00000011376	-	98	57.669	ENSOARG00000018676	-	98	53.542	Ovis_aries
ENSSHAG00000011376	-	98	61.957	ENSPPAG00000036024	-	98	56.985	Pan_paniscus
ENSSHAG00000011376	-	99	61.991	ENSPPRG00000003478	-	99	57.604	Panthera_pardus
ENSSHAG00000011376	-	98	62.112	ENSPTRG00000019452	-	98	57.123	Pan_troglodytes
ENSSHAG00000011376	-	98	61.574	ENSPANG00000016730	-	98	56.985	Papio_anubis
ENSSHAG00000011376	-	97	50.543	ENSPKIG00000014215	ptcd1	92	50.388	Paramormyrops_kingsleyae
ENSSHAG00000011376	-	90	58.569	ENSPSIG00000011184	-	99	58.970	Pelodiscus_sinensis
ENSSHAG00000011376	-	78	39.665	ENSPMAG00000009667	ptcd1	100	39.700	Petromyzon_marinus
ENSSHAG00000011376	-	99	77.131	ENSPCIG00000024778	-	100	77.131	Phascolarctos_cinereus
ENSSHAG00000011376	-	88	48.136	ENSPFOG00000004458	ptcd1	82	47.455	Poecilia_formosa
ENSSHAG00000011376	-	91	47.855	ENSPLAG00000011051	ptcd1	85	47.200	Poecilia_latipinna
ENSSHAG00000011376	-	88	48.305	ENSPMEG00000020547	ptcd1	82	47.455	Poecilia_mexicana
ENSSHAG00000011376	-	91	48.093	ENSPREG00000000059	ptcd1	84	48.093	Poecilia_reticulata
ENSSHAG00000011376	-	98	61.905	ENSPPYG00000017377	-	97	61.905	Pongo_abelii
ENSSHAG00000011376	-	85	67.391	ENSPCAG00000001852	-	88	67.391	Procavia_capensis
ENSSHAG00000011376	-	99	61.221	ENSPCOG00000018596	-	99	56.250	Propithecus_coquereli
ENSSHAG00000011376	-	66	70.707	ENSPVAG00000007529	-	72	70.707	Pteropus_vampyrus
ENSSHAG00000011376	-	88	46.755	ENSPNYG00000019993	ptcd1	84	45.642	Pundamilia_nyererei
ENSSHAG00000011376	-	93	49.361	ENSPNAG00000014931	ptcd1	92	48.920	Pygocentrus_nattereri
ENSSHAG00000011376	-	95	60.601	ENSRNOG00000000987	Ptcd1	90	60.601	Rattus_norvegicus
ENSSHAG00000011376	-	98	62.519	ENSRBIG00000043393	-	98	57.400	Rhinopithecus_bieti
ENSSHAG00000011376	-	98	62.364	ENSRROG00000036420	-	98	57.261	Rhinopithecus_roxellana
ENSSHAG00000011376	-	99	59.880	ENSSBOG00000024114	-	99	56.081	Saimiri_boliviensis_boliviensis
ENSSHAG00000011376	-	93	53.834	ENSSFOG00015007909	ptcd1	90	51.689	Scleropages_formosus
ENSSHAG00000011376	-	89	44.857	ENSSMAG00000000218	ptcd1	91	45.025	Scophthalmus_maximus
ENSSHAG00000011376	-	89	47.483	ENSSDUG00000015671	ptcd1	84	47.483	Seriola_dumerili
ENSSHAG00000011376	-	90	46.922	ENSSLDG00000014261	ptcd1	84	46.922	Seriola_lalandi_dorsalis
ENSSHAG00000011376	-	99	53.262	ENSSPUG00000003540	-	99	52.840	Sphenodon_punctatus
ENSSHAG00000011376	-	89	48.305	ENSSPAG00000011049	ptcd1	80	47.973	Stegastes_partitus
ENSSHAG00000011376	-	97	61.610	ENSSSCG00000007622	-	98	60.935	Sus_scrofa
ENSSHAG00000011376	-	93	58.347	ENSTGUG00000007563	-	99	58.805	Taeniopygia_guttata
ENSSHAG00000011376	-	91	47.446	ENSTRUG00000013471	ptcd1	80	47.446	Takifugu_rubripes
ENSSHAG00000011376	-	89	47.856	ENSTNIG00000008271	ptcd1	83	47.856	Tetraodon_nigroviridis
ENSSHAG00000011376	-	98	61.364	ENSTBEG00000011021	-	98	57.473	Tupaia_belangeri
ENSSHAG00000011376	-	98	60.276	ENSTTRG00000003006	-	98	55.510	Tursiops_truncatus
ENSSHAG00000011376	-	97	62.637	ENSUAMG00000008049	-	97	56.581	Ursus_americanus
ENSSHAG00000011376	-	95	64.537	ENSVVUG00000008836	-	98	58.030	Vulpes_vulpes
ENSSHAG00000011376	-	99	52.576	ENSXETG00000009891	ptcd1	93	52.576	Xenopus_tropicalis
ENSSHAG00000011376	-	92	47.185	ENSXMAG00000015540	ptcd1	83	47.563	Xiphophorus_maculatus