EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000011446 (Gene tree)
Gene ID: 100915293
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 20289 bases
Position: chrGL834671.1:850908-871196
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000013386	PABP	PF00658.18	1.3e-27	1	1
ENSSHAP00000013386	RRM_1	PF00076.22	1.4e-54	1	3
ENSSHAP00000013386	RRM_1	PF00076.22	1.4e-54	2	3
ENSSHAP00000013386	RRM_1	PF00076.22	1.4e-54	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000013497	PABPC1L-201	1446	-	ENSSHAP00000013386	482 (aa)	-	G3WD81

Gene Model

Click here to download ENSSHAG00000011446's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03013	RNA transport	KEGG
shr03015	mRNA surveillance pathway	KEGG
shr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000011446's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000011446	PABPC1L	100	65.323	ENSSHAG00000003431	-	97	65.323
ENSSHAG00000011446	PABPC1L	51	39.506	ENSSHAG00000006756	ELAVL2	82	39.506
ENSSHAG00000011446	PABPC1L	100	54.527	ENSSHAG00000000511	-	98	54.527
ENSSHAG00000011446	PABPC1L	50	32.456	ENSSHAG00000015609	-	78	32.174
ENSSHAG00000011446	PABPC1L	99	61.741	ENSSHAG00000018139	PABPC4	97	61.741
ENSSHAG00000011446	PABPC1L	100	66.667	ENSSHAG00000011267	PABPC1	92	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000011446	PABPC1L	100	73.824	ENSG00000101104	PABPC1L	95	82.653	Homo_sapiens
ENSSHAG00000011446	PABPC1L	99	62.295	ENSAPOG00000010842	pabpc1l	98	62.500	Acanthochromis_polyacanthus
ENSSHAG00000011446	PABPC1L	99	65.049	ENSAMEG00000004099	PABPC1L	98	65.370	Ailuropoda_melanoleuca
ENSSHAG00000011446	PABPC1L	100	70.418	ENSACIG00000021004	-	99	70.418	Amphilophus_citrinellus
ENSSHAG00000011446	PABPC1L	99	61.723	ENSAOCG00000006167	-	97	61.847	Amphiprion_ocellaris
ENSSHAG00000011446	PABPC1L	99	62.729	ENSAPEG00000010558	-	93	74.324	Amphiprion_percula
ENSSHAG00000011446	PABPC1L	100	64.097	ENSATEG00000007428	pabpc1l	98	64.300	Anabas_testudineus
ENSSHAG00000011446	PABPC1L	100	71.545	ENSAPLG00000008415	PABPC1L	98	71.545	Anas_platyrhynchos
ENSSHAG00000011446	PABPC1L	100	71.169	ENSACAG00000011841	PABPC1L	97	71.169	Anolis_carolinensis
ENSSHAG00000011446	PABPC1L	100	71.779	ENSANAG00000026826	PABPC1L	97	71.779	Aotus_nancymaae
ENSSHAG00000011446	PABPC1L	100	64.444	ENSACLG00000024791	pabpc1l	98	64.444	Astatotilapia_calliptera
ENSSHAG00000011446	PABPC1L	100	67.540	ENSAMXG00000013552	pabpc1l	98	67.540	Astyanax_mexicanus
ENSSHAG00000011446	PABPC1L	64	70.909	ENSBTAG00000016849	PABPC1L	84	70.909	Bos_taurus
ENSSHAG00000011446	PABPC1L	100	71.984	ENSCJAG00000017628	PABPC1L	97	71.984	Callithrix_jacchus
ENSSHAG00000011446	PABPC1L	99	62.885	ENSCAFG00000009573	PABPC1L	98	62.885	Canis_familiaris
ENSSHAG00000011446	PABPC1L	100	71.926	ENSCAFG00020013828	PABPC1L	97	71.926	Canis_lupus_dingo
ENSSHAG00000011446	PABPC1L	98	70.833	ENSCHIG00000025759	PABPC1L	90	70.833	Capra_hircus
ENSSHAG00000011446	PABPC1L	100	70.552	ENSTSYG00000006645	PABPC1L	98	70.552	Carlito_syrichta
ENSSHAG00000011446	PABPC1L	100	68.238	ENSCAPG00000014519	PABPC1L	95	68.238	Cavia_aperea
ENSSHAG00000011446	PABPC1L	100	68.293	ENSCPOG00000013633	PABPC1L	98	68.293	Cavia_porcellus
ENSSHAG00000011446	PABPC1L	100	72.597	ENSCCAG00000023338	PABPC1L	97	72.597	Cebus_capucinus
ENSSHAG00000011446	PABPC1L	100	73.975	ENSCATG00000034065	PABPC1L	97	73.975	Cercocebus_atys
ENSSHAG00000011446	PABPC1L	100	69.371	ENSCLAG00000005298	PABPC1L	98	69.371	Chinchilla_lanigera
ENSSHAG00000011446	PABPC1L	100	73.770	ENSCSAG00000014242	PABPC1L	97	73.770	Chlorocebus_sabaeus
ENSSHAG00000011446	PABPC1L	52	69.811	ENSCPBG00000007810	-	83	69.811	Chrysemys_picta_bellii
ENSSHAG00000011446	PABPC1L	64	79.553	ENSCPBG00000017755	-	97	79.553	Chrysemys_picta_bellii
ENSSHAG00000011446	PABPC1L	99	48.805	ENSCING00000002796	-	97	49.004	Ciona_intestinalis
ENSSHAG00000011446	PABPC1L	87	75.862	ENSCSAVG00000004246	-	97	52.130	Ciona_savignyi
ENSSHAG00000011446	PABPC1L	99	51.844	ENSCSAVG00000003102	-	99	66.667	Ciona_savignyi
ENSSHAG00000011446	PABPC1L	100	69.076	ENSCANG00000037530	PABPC1L	97	69.076	Colobus_angolensis_palliatus
ENSSHAG00000011446	PABPC1L	100	65.923	ENSCGRG00001021938	Pabpc1l	98	65.923	Cricetulus_griseus_chok1gshd
ENSSHAG00000011446	PABPC1L	100	65.923	ENSCGRG00000007946	Pabpc1l	98	65.923	Cricetulus_griseus_crigri
ENSSHAG00000011446	PABPC1L	100	59.420	ENSCSEG00000021295	pabpc1l	98	59.420	Cynoglossus_semilaevis
ENSSHAG00000011446	PABPC1L	100	65.918	ENSCVAG00000015943	-	98	65.918	Cyprinodon_variegatus
ENSSHAG00000011446	PABPC1L	100	67.944	ENSDARG00000002597	pabpc1l	99	67.944	Danio_rerio
ENSSHAG00000011446	PABPC1L	100	76.025	ENSDNOG00000048450	PABPC1L	97	76.025	Dasypus_novemcinctus
ENSSHAG00000011446	PABPC1L	100	71.575	ENSDORG00000001067	Pabpc1l	98	71.575	Dipodomys_ordii
ENSSHAG00000011446	PABPC1L	97	79.661	ENSETEG00000009969	PABPC1L	70	79.661	Echinops_telfairi
ENSSHAG00000011446	PABPC1L	69	64.730	ENSEASG00005023407	-	90	64.730	Equus_asinus_asinus
ENSSHAG00000011446	PABPC1L	64	77.729	ENSECAG00000040139	-	81	77.729	Equus_caballus
ENSSHAG00000011446	PABPC1L	100	68.916	ENSEEUG00000005978	PABPC1L	97	68.916	Erinaceus_europaeus
ENSSHAG00000011446	PABPC1L	100	70.245	ENSELUG00000001811	pabpc1l	97	70.245	Esox_lucius
ENSSHAG00000011446	PABPC1L	100	72.541	ENSFCAG00000011692	PABPC1L	97	72.541	Felis_catus
ENSSHAG00000011446	PABPC1L	80	72.180	ENSFALG00000005372	PABPC1L	86	72.180	Ficedula_albicollis
ENSSHAG00000011446	PABPC1L	100	68.519	ENSFDAG00000008291	PABPC1L	98	68.519	Fukomys_damarensis
ENSSHAG00000011446	PABPC1L	100	64.848	ENSFHEG00000003398	pabpc1l	98	64.848	Fundulus_heteroclitus
ENSSHAG00000011446	PABPC1L	100	67.423	ENSGMOG00000004437	pabpc1l	97	67.423	Gadus_morhua
ENSSHAG00000011446	PABPC1L	100	78.914	ENSGALG00000004123	PABPC1L	96	81.404	Gallus_gallus
ENSSHAG00000011446	PABPC1L	100	60.264	ENSGAFG00000021057	pabpc1l	98	60.264	Gambusia_affinis
ENSSHAG00000011446	PABPC1L	100	64.718	ENSGACG00000002792	pabpc1l	99	64.718	Gasterosteus_aculeatus
ENSSHAG00000011446	PABPC1L	100	74.747	ENSGAGG00000000589	PABPC1L	97	74.747	Gopherus_agassizii
ENSSHAG00000011446	PABPC1L	100	74.233	ENSGGOG00000004584	PABPC1L	97	74.233	Gorilla_gorilla
ENSSHAG00000011446	PABPC1L	100	64.242	ENSHBUG00000006134	pabpc1l	98	64.242	Haplochromis_burtoni
ENSSHAG00000011446	PABPC1L	100	69.838	ENSHGLG00000008434	PABPC1L	99	69.838	Heterocephalus_glaber_female
ENSSHAG00000011446	PABPC1L	100	69.838	ENSHGLG00100012151	PABPC1L	99	69.838	Heterocephalus_glaber_male
ENSSHAG00000011446	PABPC1L	51	78.000	ENSHGLG00100019506	-	94	78.000	Heterocephalus_glaber_male
ENSSHAG00000011446	PABPC1L	99	64.358	ENSHCOG00000009270	pabpc1l	99	64.358	Hippocampus_comes
ENSSHAG00000011446	PABPC1L	51	64.286	ENSIPUG00000006780	-	84	64.286	Ictalurus_punctatus
ENSSHAG00000011446	PABPC1L	51	62.500	ENSIPUG00000006760	-	87	62.500	Ictalurus_punctatus
ENSSHAG00000011446	PABPC1L	100	70.161	ENSIPUG00000012602	pabpc1l	98	70.161	Ictalurus_punctatus
ENSSHAG00000011446	PABPC1L	100	71.370	ENSSTOG00000003739	PABPC1L	98	71.370	Ictidomys_tridecemlineatus
ENSSHAG00000011446	PABPC1L	99	66.122	ENSJJAG00000022406	Pabpc1l	99	66.122	Jaculus_jaculus
ENSSHAG00000011446	PABPC1L	100	64.622	ENSKMAG00000016847	pabpc1l	98	64.622	Kryptolebias_marmoratus
ENSSHAG00000011446	PABPC1L	100	64.200	ENSLBEG00000010084	pabpc1l	98	64.200	Labrus_bergylta
ENSSHAG00000011446	PABPC1L	100	65.878	ENSLACG00000005762	PABPC1L	96	68.204	Latimeria_chalumnae
ENSSHAG00000011446	PABPC1L	100	68.952	ENSLOCG00000007519	pabpc1l	97	68.952	Lepisosteus_oculatus
ENSSHAG00000011446	PABPC1L	100	71.687	ENSLAFG00000003553	PABPC1L	99	71.687	Loxodonta_africana
ENSSHAG00000011446	PABPC1L	100	74.180	ENSMFAG00000040365	PABPC1L	97	74.180	Macaca_fascicularis
ENSSHAG00000011446	PABPC1L	100	71.779	ENSMNEG00000032298	PABPC1L	97	71.779	Macaca_nemestrina
ENSSHAG00000011446	PABPC1L	100	73.975	ENSMLEG00000043139	PABPC1L	97	73.975	Mandrillus_leucophaeus
ENSSHAG00000011446	PABPC1L	97	64.979	ENSMAMG00000011854	pabpc1l	97	64.979	Mastacembelus_armatus
ENSSHAG00000011446	PABPC1L	100	64.444	ENSMZEG00005023713	pabpc1l	98	64.444	Maylandia_zebra
ENSSHAG00000011446	PABPC1L	100	73.211	ENSMGAG00000003674	PABPC1L	97	73.211	Meleagris_gallopavo
ENSSHAG00000011446	PABPC1L	100	65.041	ENSMOCG00000013186	Pabpc1l	97	65.041	Microtus_ochrogaster
ENSSHAG00000011446	PABPC1L	100	64.980	ENSMMOG00000020574	-	98	64.980	Mola_mola
ENSSHAG00000011446	PABPC1L	97	86.709	ENSMODG00000016198	PABPC1L	98	86.709	Monodelphis_domestica
ENSSHAG00000011446	PABPC1L	97	64.167	ENSMALG00000021622	pabpc1l	99	64.167	Monopterus_albus
ENSSHAG00000011446	PABPC1L	100	66.531	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	66.531	Mus_caroli
ENSSHAG00000011446	PABPC1L	100	66.189	ENSMUSG00000054582	Pabpc1l	99	66.189	Mus_musculus
ENSSHAG00000011446	PABPC1L	100	67.206	MGP_PahariEiJ_G0026071	Pabpc1l	99	67.206	Mus_pahari
ENSSHAG00000011446	PABPC1L	100	66.531	MGP_SPRETEiJ_G0025549	Pabpc1l	99	66.531	Mus_spretus
ENSSHAG00000011446	PABPC1L	100	72.541	ENSMPUG00000017646	PABPC1L	97	72.541	Mustela_putorius_furo
ENSSHAG00000011446	PABPC1L	99	67.206	ENSMLUG00000006324	PABPC1L	96	67.206	Myotis_lucifugus
ENSSHAG00000011446	PABPC1L	100	66.939	ENSNGAG00000010458	Pabpc1l	98	66.939	Nannospalax_galili
ENSSHAG00000011446	PABPC1L	100	70.513	ENSNBRG00000016633	pabpc1l	99	70.513	Neolamprologus_brichardi
ENSSHAG00000011446	PABPC1L	100	74.274	ENSMEUG00000007905	-	97	74.274	Notamacropus_eugenii
ENSSHAG00000011446	PABPC1L	100	70.552	ENSOPRG00000011846	PABPC1L	98	70.552	Ochotona_princeps
ENSSHAG00000011446	PABPC1L	100	62.140	ENSODEG00000015482	PABPC1L	97	62.140	Octodon_degus
ENSSHAG00000011446	PABPC1L	100	64.242	ENSONIG00000017314	pabpc1l	98	64.242	Oreochromis_niloticus
ENSSHAG00000011446	PABPC1L	88	60.277	ENSOANG00000015793	-	98	60.277	Ornithorhynchus_anatinus
ENSSHAG00000011446	PABPC1L	100	65.962	ENSOCUG00000003005	PABPC1L	99	65.962	Oryctolagus_cuniculus
ENSSHAG00000011446	PABPC1L	100	71.010	ENSORLG00000010322	pabpc1l	99	71.010	Oryzias_latipes
ENSSHAG00000011446	PABPC1L	100	71.010	ENSORLG00020021193	pabpc1l	99	71.010	Oryzias_latipes_hni
ENSSHAG00000011446	PABPC1L	99	71.010	ENSORLG00015017018	pabpc1l	98	71.010	Oryzias_latipes_hsok
ENSSHAG00000011446	PABPC1L	100	59.733	ENSOMEG00000010789	pabpc1l	98	59.733	Oryzias_melastigma
ENSSHAG00000011446	PABPC1L	100	72.525	ENSOGAG00000032999	PABPC1L	98	72.525	Otolemur_garnettii
ENSSHAG00000011446	PABPC1L	100	71.138	ENSOARG00000004578	PABPC1L	97	71.138	Ovis_aries
ENSSHAG00000011446	PABPC1L	100	74.029	ENSPPAG00000039677	PABPC1L	97	74.029	Pan_paniscus
ENSSHAG00000011446	PABPC1L	54	64.796	ENSPPRG00000019327	-	95	65.306	Panthera_pardus
ENSSHAG00000011446	PABPC1L	100	72.541	ENSPTIG00000006524	PABPC1L	99	72.541	Panthera_tigris_altaica
ENSSHAG00000011446	PABPC1L	54	83.163	ENSPTRG00000013531	PABPC1L	95	83.163	Pan_troglodytes
ENSSHAG00000011446	PABPC1L	100	73.975	ENSPANG00000018788	PABPC1L	97	73.975	Papio_anubis
ENSSHAG00000011446	PABPC1L	100	70.648	ENSPKIG00000007322	pabpc1l	98	70.648	Paramormyrops_kingsleyae
ENSSHAG00000011446	PABPC1L	59	80.277	ENSPSIG00000013289	PABPC1L	97	80.277	Pelodiscus_sinensis
ENSSHAG00000011446	PABPC1L	51	71.264	ENSPMGG00000023117	pabpc1l	94	71.264	Periophthalmus_magnuspinnatus
ENSSHAG00000011446	PABPC1L	66	65.000	ENSPMGG00000023121	-	93	65.000	Periophthalmus_magnuspinnatus
ENSSHAG00000011446	PABPC1L	100	64.344	ENSPEMG00000020671	Pabpc1l	98	65.112	Peromyscus_maniculatus_bairdii
ENSSHAG00000011446	PABPC1L	100	65.784	ENSPFOG00000013241	pabpc1l	97	65.784	Poecilia_formosa
ENSSHAG00000011446	PABPC1L	100	65.130	ENSPLAG00000017490	-	98	65.130	Poecilia_latipinna
ENSSHAG00000011446	PABPC1L	100	64.588	ENSPMEG00000007677	pabpc1l	98	64.588	Poecilia_mexicana
ENSSHAG00000011446	PABPC1L	59	74.386	ENSPREG00000015886	pabpc1l	98	74.386	Poecilia_reticulata
ENSSHAG00000011446	PABPC1L	100	74.029	ENSPPYG00000011042	PABPC1L	97	74.029	Pongo_abelii
ENSSHAG00000011446	PABPC1L	50	58.776	ENSPCAG00000011787	-	59	58.776	Procavia_capensis
ENSSHAG00000011446	PABPC1L	100	73.006	ENSPCOG00000020630	PABPC1L	98	73.006	Propithecus_coquereli
ENSSHAG00000011446	PABPC1L	100	70.348	ENSPVAG00000012663	PABPC1L	98	70.348	Pteropus_vampyrus
ENSSHAG00000011446	PABPC1L	100	70.513	ENSPNYG00000004101	pabpc1l	99	70.513	Pundamilia_nyererei
ENSSHAG00000011446	PABPC1L	100	60.000	ENSPNAG00000021248	pabpc1l	98	60.000	Pygocentrus_nattereri
ENSSHAG00000011446	PABPC1L	100	66.531	ENSRNOG00000012750	Pabpc1l	98	66.531	Rattus_norvegicus
ENSSHAG00000011446	PABPC1L	100	73.824	ENSRBIG00000035381	PABPC1L	97	73.824	Rhinopithecus_bieti
ENSSHAG00000011446	PABPC1L	100	73.824	ENSRROG00000044498	PABPC1L	97	73.824	Rhinopithecus_roxellana
ENSSHAG00000011446	PABPC1L	100	72.188	ENSSBOG00000009532	-	97	72.188	Saimiri_boliviensis_boliviensis
ENSSHAG00000011446	PABPC1L	100	68.889	ENSSFOG00015017304	pabpc1l	98	68.889	Scleropages_formosus
ENSSHAG00000011446	PABPC1L	100	64.777	ENSSMAG00000010516	pabpc1l	96	76.712	Scophthalmus_maximus
ENSSHAG00000011446	PABPC1L	100	65.859	ENSSDUG00000014743	pabpc1l	98	65.859	Seriola_dumerili
ENSSHAG00000011446	PABPC1L	100	70.607	ENSSLDG00000006981	pabpc1l	95	74.074	Seriola_lalandi_dorsalis
ENSSHAG00000011446	PABPC1L	100	72.435	ENSSPUG00000004233	PABPC1L	97	72.435	Sphenodon_punctatus
ENSSHAG00000011446	PABPC1L	99	56.522	ENSSPAG00000017137	pabpc1l	97	56.522	Stegastes_partitus
ENSSHAG00000011446	PABPC1L	100	69.405	ENSSSCG00000007382	PABPC1L	98	69.405	Sus_scrofa
ENSSHAG00000011446	PABPC1L	100	70.437	ENSTGUG00000005114	PABPC1L	98	70.437	Taeniopygia_guttata
ENSSHAG00000011446	PABPC1L	97	65.553	ENSTRUG00000011085	pabpc1l	96	65.553	Takifugu_rubripes
ENSSHAG00000011446	PABPC1L	100	65.517	ENSTNIG00000017903	pabpc1l	97	65.517	Tetraodon_nigroviridis
ENSSHAG00000011446	PABPC1L	94	80.488	ENSTBEG00000002851	PABPC1L	78	80.488	Tupaia_belangeri
ENSSHAG00000011446	PABPC1L	94	69.584	ENSTTRG00000007618	PABPC1L	98	69.979	Tursiops_truncatus
ENSSHAG00000011446	PABPC1L	100	70.287	ENSUAMG00000017682	PABPC1L	97	70.287	Ursus_americanus
ENSSHAG00000011446	PABPC1L	63	79.479	ENSUMAG00000025436	PABPC1L	93	79.479	Ursus_maritimus
ENSSHAG00000011446	PABPC1L	100	82.653	ENSVVUG00000018939	PABPC1L	94	82.653	Vulpes_vulpes
ENSSHAG00000011446	PABPC1L	100	66.329	ENSXETG00000022831	pabpc1l	97	66.329	Xenopus_tropicalis
ENSSHAG00000011446	PABPC1L	100	70.701	ENSXCOG00000005459	pabpc1l	97	70.701	Xiphophorus_couchianus
ENSSHAG00000011446	PABPC1L	100	64.128	ENSXMAG00000017135	pabpc1l	98	64.128	Xiphophorus_maculatus