EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000011559 (Gene tree)
Gene ID: 100928431
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 13680 bases
Position: chrGL841419.1:869431-883110
Accession: 100928431
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000013522	LSM	PF01423.22	6.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000013633	LSM4-201	420	-	ENSSHAP00000013522	139 (aa)	XP_012397612	G3WDL7

Gene Model

Click here to download ENSSHAG00000011559's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03018	RNA degradation	KEGG
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000011559's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000011559	LSM4	100	96.403	ENSG00000130520	LSM4	100	96.403	Homo_sapiens
ENSSHAG00000011559	LSM4	71	97.980	ENSAPOG00000005643	lsm4	58	100.000	Acanthochromis_polyacanthus
ENSSHAG00000011559	LSM4	99	96.377	ENSAMEG00000011162	LSM4	95	96.377	Ailuropoda_melanoleuca
ENSSHAG00000011559	LSM4	99	77.622	ENSAOCG00000006414	lsm4	59	100.000	Amphiprion_ocellaris
ENSSHAG00000011559	LSM4	71	97.980	ENSAPEG00000006238	lsm4	59	100.000	Amphiprion_percula
ENSSHAG00000011559	LSM4	71	97.980	ENSATEG00000016559	lsm4	58	100.000	Anabas_testudineus
ENSSHAG00000011559	LSM4	100	96.403	ENSANAG00000034659	LSM4	100	96.403	Aotus_nancymaae
ENSSHAG00000011559	LSM4	99	81.944	ENSACLG00000022738	lsm4	60	100.000	Astatotilapia_calliptera
ENSSHAG00000011559	LSM4	99	84.783	ENSAMXG00000016932	lsm4	96	85.401	Astyanax_mexicanus
ENSSHAG00000011559	LSM4	100	96.403	ENSBTAG00000008578	LSM4	100	96.403	Bos_taurus
ENSSHAG00000011559	LSM4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSSHAG00000011559	LSM4	100	96.403	ENSCJAG00000014171	LSM4	100	96.403	Callithrix_jacchus
ENSSHAG00000011559	LSM4	99	96.377	ENSCAFG00000014900	LSM4	90	96.377	Canis_familiaris
ENSSHAG00000011559	LSM4	100	96.403	ENSCAFG00020012137	LSM4	100	96.403	Canis_lupus_dingo
ENSSHAG00000011559	LSM4	99	96.377	ENSCHIG00000010928	LSM4	91	96.377	Capra_hircus
ENSSHAG00000011559	LSM4	100	95.683	ENSTSYG00000030906	LSM4	100	95.683	Carlito_syrichta
ENSSHAG00000011559	LSM4	100	94.245	ENSCAPG00000014140	LSM4	100	94.245	Cavia_aperea
ENSSHAG00000011559	LSM4	100	94.245	ENSCPOG00000024117	LSM4	100	94.245	Cavia_porcellus
ENSSHAG00000011559	LSM4	100	96.403	ENSCCAG00000036308	LSM4	100	96.403	Cebus_capucinus
ENSSHAG00000011559	LSM4	100	96.403	ENSCATG00000029311	LSM4	100	96.403	Cercocebus_atys
ENSSHAG00000011559	LSM4	100	93.525	ENSCLAG00000010828	LSM4	100	93.525	Chinchilla_lanigera
ENSSHAG00000011559	LSM4	100	96.403	ENSCSAG00000005370	LSM4	100	96.403	Chlorocebus_sabaeus
ENSSHAG00000011559	LSM4	100	96.403	ENSCPBG00000012925	LSM4	100	96.403	Chrysemys_picta_bellii
ENSSHAG00000011559	LSM4	62	93.023	ENSCING00000007519	-	69	93.182	Ciona_intestinalis
ENSSHAG00000011559	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSSHAG00000011559	LSM4	100	96.403	ENSCANG00000043686	LSM4	100	96.403	Colobus_angolensis_palliatus
ENSSHAG00000011559	LSM4	100	94.245	ENSCGRG00001014436	Lsm4	100	94.245	Cricetulus_griseus_chok1gshd
ENSSHAG00000011559	LSM4	99	94.203	ENSCGRG00000009398	Lsm4	100	94.203	Cricetulus_griseus_crigri
ENSSHAG00000011559	LSM4	70	96.907	ENSCSEG00000016127	lsm4	96	78.832	Cynoglossus_semilaevis
ENSSHAG00000011559	LSM4	88	76.000	ENSCVAG00000021828	lsm4	56	98.630	Cyprinodon_variegatus
ENSSHAG00000011559	LSM4	99	78.571	ENSCVAG00000010601	lsm4	62	98.864	Cyprinodon_variegatus
ENSSHAG00000011559	LSM4	97	80.851	ENSDARG00000023852	lsm4	62	100.000	Danio_rerio
ENSSHAG00000011559	LSM4	100	94.964	ENSDORG00000024225	Lsm4	100	94.964	Dipodomys_ordii
ENSSHAG00000011559	LSM4	70	80.412	FBgn0032240	CG17768	57	87.500	Drosophila_melanogaster
ENSSHAG00000011559	LSM4	89	95.968	ENSETEG00000007762	-	100	95.968	Echinops_telfairi
ENSSHAG00000011559	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSSHAG00000011559	LSM4	100	96.403	ENSECAG00000010141	LSM4	57	96.403	Equus_caballus
ENSSHAG00000011559	LSM4	95	85.821	ENSELUG00000012821	lsm4	100	84.091	Esox_lucius
ENSSHAG00000011559	LSM4	100	96.403	ENSFCAG00000040580	LSM4	100	96.403	Felis_catus
ENSSHAG00000011559	LSM4	99	96.377	ENSFALG00000009478	LSM4	99	96.377	Ficedula_albicollis
ENSSHAG00000011559	LSM4	99	94.203	ENSFDAG00000010124	LSM4	100	94.203	Fukomys_damarensis
ENSSHAG00000011559	LSM4	69	97.917	ENSGMOG00000007729	lsm4	59	100.000	Gadus_morhua
ENSSHAG00000011559	LSM4	100	96.403	ENSGALG00000003385	LSM4	100	96.403	Gallus_gallus
ENSSHAG00000011559	LSM4	99	85.000	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSSHAG00000011559	LSM4	68	98.947	ENSGACG00000008140	lsm4	59	100.000	Gasterosteus_aculeatus
ENSSHAG00000011559	LSM4	100	96.403	ENSGAGG00000017812	LSM4	100	96.403	Gopherus_agassizii
ENSSHAG00000011559	LSM4	100	96.403	ENSGGOG00000012914	-	100	96.403	Gorilla_gorilla
ENSSHAG00000011559	LSM4	99	82.517	ENSHBUG00000008858	lsm4	61	96.330	Haplochromis_burtoni
ENSSHAG00000011559	LSM4	100	93.525	ENSHGLG00000006568	LSM4	100	93.525	Heterocephalus_glaber_female
ENSSHAG00000011559	LSM4	67	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSSHAG00000011559	LSM4	99	78.102	ENSHCOG00000008819	lsm4	62	100.000	Hippocampus_comes
ENSSHAG00000011559	LSM4	99	84.783	ENSIPUG00000005368	Lsm4	62	100.000	Ictalurus_punctatus
ENSSHAG00000011559	LSM4	100	96.403	ENSSTOG00000016494	LSM4	100	96.403	Ictidomys_tridecemlineatus
ENSSHAG00000011559	LSM4	100	94.245	ENSJJAG00000017420	Lsm4	100	94.245	Jaculus_jaculus
ENSSHAG00000011559	LSM4	62	98.837	ENSKMAG00000005073	lsm4	61	98.864	Kryptolebias_marmoratus
ENSSHAG00000011559	LSM4	71	97.980	ENSLBEG00000027930	lsm4	59	100.000	Labrus_bergylta
ENSSHAG00000011559	LSM4	99	85.401	ENSLACG00000015861	LSM4	98	85.401	Latimeria_chalumnae
ENSSHAG00000011559	LSM4	93	85.271	ENSLOCG00000002025	lsm4	62	98.864	Lepisosteus_oculatus
ENSSHAG00000011559	LSM4	99	96.377	ENSLAFG00000017459	LSM4	99	96.377	Loxodonta_africana
ENSSHAG00000011559	LSM4	100	96.403	ENSMFAG00000031194	LSM4	100	96.403	Macaca_fascicularis
ENSSHAG00000011559	LSM4	100	96.403	ENSMMUG00000004405	LSM4	100	96.403	Macaca_mulatta
ENSSHAG00000011559	LSM4	100	96.403	ENSMNEG00000042899	LSM4	100	96.403	Macaca_nemestrina
ENSSHAG00000011559	LSM4	100	96.403	ENSMLEG00000027948	LSM4	100	96.403	Mandrillus_leucophaeus
ENSSHAG00000011559	LSM4	99	81.159	ENSMAMG00000006190	lsm4	96	78.832	Mastacembelus_armatus
ENSSHAG00000011559	LSM4	99	82.517	ENSMZEG00005016420	lsm4	60	100.000	Maylandia_zebra
ENSSHAG00000011559	LSM4	99	95.683	ENSMGAG00000004976	LSM4	99	95.683	Meleagris_gallopavo
ENSSHAG00000011559	LSM4	100	95.683	ENSMICG00000000222	LSM4	100	95.683	Microcebus_murinus
ENSSHAG00000011559	LSM4	100	94.245	ENSMOCG00000020861	Lsm4	100	94.245	Microtus_ochrogaster
ENSSHAG00000011559	LSM4	89	100.000	ENSMODG00000015044	-	100	100.000	Monodelphis_domestica
ENSSHAG00000011559	LSM4	99	77.857	ENSMALG00000018159	lsm4	62	98.864	Monopterus_albus
ENSSHAG00000011559	LSM4	100	94.245	MGP_CAROLIEiJ_G0031158	Lsm4	100	94.245	Mus_caroli
ENSSHAG00000011559	LSM4	100	94.245	ENSMUSG00000031848	Lsm4	100	94.245	Mus_musculus
ENSSHAG00000011559	LSM4	100	94.245	MGP_PahariEiJ_G0021623	Lsm4	100	94.245	Mus_pahari
ENSSHAG00000011559	LSM4	100	94.245	MGP_SPRETEiJ_G0032276	Lsm4	100	94.245	Mus_spretus
ENSSHAG00000011559	LSM4	100	96.403	ENSMPUG00000015589	LSM4	100	96.403	Mustela_putorius_furo
ENSSHAG00000011559	LSM4	99	96.377	ENSMLUG00000004010	LSM4	99	96.377	Myotis_lucifugus
ENSSHAG00000011559	LSM4	100	94.245	ENSNGAG00000008644	Lsm4	100	94.245	Nannospalax_galili
ENSSHAG00000011559	LSM4	77	96.296	ENSNBRG00000022150	lsm4	67	96.296	Neolamprologus_brichardi
ENSSHAG00000011559	LSM4	89	94.355	ENSMEUG00000013229	LSM4	100	94.355	Notamacropus_eugenii
ENSSHAG00000011559	LSM4	89	89.516	ENSOPRG00000005575	LSM4	100	80.645	Ochotona_princeps
ENSSHAG00000011559	LSM4	100	70.504	ENSODEG00000011712	-	100	70.504	Octodon_degus
ENSSHAG00000011559	LSM4	100	94.245	ENSODEG00000020549	-	100	94.245	Octodon_degus
ENSSHAG00000011559	LSM4	100	83.453	ENSODEG00000004519	-	100	73.381	Octodon_degus
ENSSHAG00000011559	LSM4	99	81.944	ENSONIG00000012724	lsm4	60	100.000	Oreochromis_niloticus
ENSSHAG00000011559	LSM4	80	93.043	ENSOANG00000007434	LSM4	99	93.043	Ornithorhynchus_anatinus
ENSSHAG00000011559	LSM4	100	85.612	ENSORLG00000008391	lsm4	61	98.864	Oryzias_latipes
ENSSHAG00000011559	LSM4	100	85.612	ENSORLG00020014829	lsm4	61	98.864	Oryzias_latipes_hni
ENSSHAG00000011559	LSM4	100	85.612	ENSORLG00015010205	lsm4	61	98.864	Oryzias_latipes_hsok
ENSSHAG00000011559	LSM4	100	84.892	ENSOMEG00000003606	lsm4	61	98.864	Oryzias_melastigma
ENSSHAG00000011559	LSM4	71	96.970	ENSOGAG00000027992	LSM4	60	98.851	Otolemur_garnettii
ENSSHAG00000011559	LSM4	63	98.851	ENSOARG00000012553	LSM4	60	98.851	Ovis_aries
ENSSHAG00000011559	LSM4	100	96.403	ENSPPAG00000044045	-	100	96.403	Pan_paniscus
ENSSHAG00000011559	LSM4	100	96.403	ENSPPRG00000018264	LSM4	100	96.403	Panthera_pardus
ENSSHAG00000011559	LSM4	99	96.377	ENSPTIG00000006306	LSM4	100	96.377	Panthera_tigris_altaica
ENSSHAG00000011559	LSM4	100	96.403	ENSPTRG00000031470	LSM4	100	96.403	Pan_troglodytes
ENSSHAG00000011559	LSM4	100	96.403	ENSPANG00000014399	LSM4	100	96.403	Papio_anubis
ENSSHAG00000011559	LSM4	99	83.212	ENSPKIG00000006154	lsm4	62	100.000	Paramormyrops_kingsleyae
ENSSHAG00000011559	LSM4	99	95.652	ENSPSIG00000012358	LSM4	100	95.652	Pelodiscus_sinensis
ENSSHAG00000011559	LSM4	100	94.245	ENSPEMG00000001358	Lsm4	100	94.245	Peromyscus_maniculatus_bairdii
ENSSHAG00000011559	LSM4	99	81.429	ENSPLAG00000016267	lsm4	62	100.000	Poecilia_latipinna
ENSSHAG00000011559	LSM4	99	85.714	ENSPMEG00000016378	lsm4	63	100.000	Poecilia_mexicana
ENSSHAG00000011559	LSM4	100	96.403	ENSPPYG00000009736	LSM4	100	96.403	Pongo_abelii
ENSSHAG00000011559	LSM4	89	95.968	ENSPCAG00000008513	LSM4	100	95.968	Procavia_capensis
ENSSHAG00000011559	LSM4	100	95.683	ENSPCOG00000019837	LSM4	100	95.683	Propithecus_coquereli
ENSSHAG00000011559	LSM4	100	96.403	ENSPVAG00000015383	LSM4	100	96.403	Pteropus_vampyrus
ENSSHAG00000011559	LSM4	99	82.517	ENSPNYG00000016794	lsm4	60	100.000	Pundamilia_nyererei
ENSSHAG00000011559	LSM4	96	84.328	ENSPNAG00000016598	lsm4	65	100.000	Pygocentrus_nattereri
ENSSHAG00000011559	LSM4	100	94.245	ENSRNOG00000019572	Lsm4	100	94.245	Rattus_norvegicus
ENSSHAG00000011559	LSM4	100	96.403	ENSRBIG00000024717	LSM4	100	96.403	Rhinopithecus_bieti
ENSSHAG00000011559	LSM4	100	96.403	ENSRROG00000045706	LSM4	100	96.403	Rhinopithecus_roxellana
ENSSHAG00000011559	LSM4	60	40.860	YER112W	LSM4	51	40.625	Saccharomyces_cerevisiae
ENSSHAG00000011559	LSM4	90	96.000	ENSSBOG00000022455	LSM4	100	96.000	Saimiri_boliviensis_boliviensis
ENSSHAG00000011559	LSM4	99	81.752	ENSSFOG00015021067	lsm4	62	100.000	Scleropages_formosus
ENSSHAG00000011559	LSM4	71	96.970	ENSSMAG00000021020	lsm4	59	100.000	Scophthalmus_maximus
ENSSHAG00000011559	LSM4	71	97.980	ENSSDUG00000009588	lsm4	53	100.000	Seriola_dumerili
ENSSHAG00000011559	LSM4	71	97.980	ENSSLDG00000006827	lsm4	52	100.000	Seriola_lalandi_dorsalis
ENSSHAG00000011559	LSM4	63	100.000	ENSSPUG00000010166	LSM4	56	100.000	Sphenodon_punctatus
ENSSHAG00000011559	LSM4	71	97.980	ENSSPAG00000011615	lsm4	58	100.000	Stegastes_partitus
ENSSHAG00000011559	LSM4	100	96.403	ENSSSCG00000034314	LSM4	100	96.403	Sus_scrofa
ENSSHAG00000011559	LSM4	99	85.000	ENSTRUG00000021737	lsm4	62	97.727	Takifugu_rubripes
ENSSHAG00000011559	LSM4	99	82.143	ENSTNIG00000010191	lsm4	61	98.864	Tetraodon_nigroviridis
ENSSHAG00000011559	LSM4	99	96.377	ENSUAMG00000000665	LSM4	99	96.377	Ursus_americanus
ENSSHAG00000011559	LSM4	100	96.403	ENSUMAG00000009013	LSM4	100	96.403	Ursus_maritimus
ENSSHAG00000011559	LSM4	99	96.377	ENSVVUG00000008136	LSM4	71	96.377	Vulpes_vulpes
ENSSHAG00000011559	LSM4	100	93.525	ENSXETG00000024933	lsm4	100	79.137	Xenopus_tropicalis