EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000011866 (Gene tree)
Gene ID: 100916293
Gene Symbol: -
Alias: -
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 10868 bases
Position: chrGL856821.1:920473-931340
Accession: 100916293
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000013874	MMR_HSR1	PF01926.23	3.5e-05	1	1
ENSSHAP00000013875	MMR_HSR1	PF01926.23	5.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000013992	-	4187	-	ENSSHAP00000013875	243 (aa)	-	G3WEM0
ENSSHAT00000013991	-	4265	-	ENSSHAP00000013874	203 (aa)	XP_012403569	G3WEL9

Gene Model

Click here to download ENSSHAG00000011866's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000011866's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000011866	-	81	45.455	ENSSHAG00000006816	-	76	45.455
ENSSHAG00000011866	-	93	46.500	ENSSHAG00000007153	RAB3D	95	44.700
ENSSHAG00000011866	-	95	38.342	ENSSHAG00000006787	RAB5A	89	38.342
ENSSHAG00000011866	-	86	31.638	ENSSHAG00000016060	RRAS2	97	31.638
ENSSHAG00000011866	-	91	36.508	ENSSHAG00000006085	RAB31	97	36.508
ENSSHAG00000011866	-	95	41.089	ENSSHAG00000006622	RAB11A	94	41.089
ENSSHAG00000011866	-	79	31.765	ENSSHAG00000016468	RASL11A	76	31.351
ENSSHAG00000011866	-	89	46.196	ENSSHAG00000018081	RAB30	89	46.196
ENSSHAG00000011866	-	81	58.537	ENSSHAG00000010376	-	82	58.537
ENSSHAG00000011866	-	83	42.690	ENSSHAG00000008520	-	80	42.614
ENSSHAG00000011866	-	81	59.146	ENSSHAG00000003597	RAB1A	80	59.146
ENSSHAG00000011866	-	95	40.299	ENSSHAG00000013327	RAB25	94	40.299
ENSSHAG00000011866	-	80	42.593	ENSSHAG00000006833	-	98	42.593
ENSSHAG00000011866	-	75	38.158	ENSSHAG00000006379	RAB23	69	37.805
ENSSHAG00000011866	-	95	39.394	ENSSHAG00000012788	RAB9B	97	39.394
ENSSHAG00000011866	-	58	30.508	ENSSHAG00000017434	ARF4	63	30.508
ENSSHAG00000011866	-	79	40.123	ENSSHAG00000006631	KRAS	92	38.342
ENSSHAG00000011866	-	58	30.252	ENSSHAG00000015053	ARF5	63	30.508
ENSSHAG00000011866	-	79	38.650	ENSSHAG00000009032	MRAS	85	36.517
ENSSHAG00000011866	-	80	31.288	ENSSHAG00000004318	-	80	31.288
ENSSHAG00000011866	-	84	56.471	ENSSHAG00000013263	RAB15	91	51.295
ENSSHAG00000011866	-	95	35.938	ENSSHAG00000007727	RAB5B	89	35.938
ENSSHAG00000011866	-	62	30.147	ENSSHAG00000017842	ARFRP1	67	30.147
ENSSHAG00000011866	-	84	53.488	ENSSHAG00000001489	RAB12	85	50.254
ENSSHAG00000011866	-	80	30.675	ENSSHAG00000001457	-	84	30.675
ENSSHAG00000011866	-	99	37.624	ENSSHAG00000009306	RAB17	95	37.561
ENSSHAG00000011866	-	81	44.242	ENSSHAG00000017800	RAB14	77	44.242
ENSSHAG00000011866	-	58	30.508	ENSSHAG00000016852	ARL14	59	30.769
ENSSHAG00000011866	-	95	36.979	ENSSHAG00000005267	-	89	36.979
ENSSHAG00000011866	-	62	31.746	ENSSHAG00000018738	ARL3	66	31.746
ENSSHAG00000011866	-	87	43.820	ENSSHAG00000007613	RAB18	86	43.820
ENSSHAG00000011866	-	91	37.234	ENSSHAG00000016302	RAB22A	97	37.234
ENSSHAG00000011866	-	83	49.112	ENSSHAG00000013149	-	80	49.112
ENSSHAG00000011866	-	80	38.690	ENSSHAG00000016787	RAB7A	81	38.690

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000011866	-	100	91.667	ENSG00000143545	RAB13	100	91.667	Homo_sapiens
ENSSHAG00000011866	-	99	76.119	ENSACIG00000008584	rab13	97	76.119	Amphilophus_citrinellus
ENSSHAG00000011866	-	100	92.157	ENSANAG00000030247	-	100	92.157	Aotus_nancymaae
ENSSHAG00000011866	-	99	80.693	ENSAMXG00000030712	rab13	99	80.693	Astyanax_mexicanus
ENSSHAG00000011866	-	100	89.163	ENSBTAG00000017604	RAB13	100	89.163	Bos_taurus
ENSSHAG00000011866	-	80	47.853	WBGene00019317	K02E10.1	87	42.857	Caenorhabditis_elegans
ENSSHAG00000011866	-	100	92.647	ENSCJAG00000009933	-	100	92.647	Callithrix_jacchus
ENSSHAG00000011866	-	100	88.670	ENSCHIG00000022271	-	100	88.670	Capra_hircus
ENSSHAG00000011866	-	99	88.177	ENSCPOG00000011491	-	99	88.177	Cavia_porcellus
ENSSHAG00000011866	-	100	91.667	ENSCCAG00000028502	-	100	91.667	Cebus_capucinus
ENSSHAG00000011866	-	100	91.667	ENSCATG00000041779	-	100	91.667	Cercocebus_atys
ENSSHAG00000011866	-	100	87.745	ENSCLAG00000006603	-	100	87.745	Chinchilla_lanigera
ENSSHAG00000011866	-	100	91.667	ENSCANG00000036573	-	100	91.667	Colobus_angolensis_palliatus
ENSSHAG00000011866	-	100	89.216	ENSCGRG00001021505	Rab13	100	89.216	Cricetulus_griseus_chok1gshd
ENSSHAG00000011866	-	100	89.216	ENSCGRG00000012126	Rab13	100	89.216	Cricetulus_griseus_crigri
ENSSHAG00000011866	-	99	78.218	ENSCSEG00000002358	rab13	99	78.218	Cynoglossus_semilaevis
ENSSHAG00000011866	-	99	81.188	ENSDARG00000034771	rab13	99	81.188	Danio_rerio
ENSSHAG00000011866	-	100	91.176	ENSDORG00000001591	Rab13	100	91.176	Dipodomys_ordii
ENSSHAG00000011866	-	100	92.647	ENSEASG00005000683	-	100	92.647	Equus_asinus_asinus
ENSSHAG00000011866	-	100	92.647	ENSECAG00000016551	RAB13	100	92.647	Equus_caballus
ENSSHAG00000011866	-	99	87.685	ENSEEUG00000001233	-	99	87.685	Erinaceus_europaeus
ENSSHAG00000011866	-	99	78.218	ENSELUG00000012801	rab13	99	78.218	Esox_lucius
ENSSHAG00000011866	-	100	88.725	ENSFCAG00000045269	-	100	88.725	Felis_catus
ENSSHAG00000011866	-	65	96.212	ENSFDAG00000014469	-	100	96.212	Fukomys_damarensis
ENSSHAG00000011866	-	99	76.733	ENSFHEG00000021221	rab13	97	83.616	Fundulus_heteroclitus
ENSSHAG00000011866	-	99	79.703	ENSGACG00000011925	rab13	99	79.703	Gasterosteus_aculeatus
ENSSHAG00000011866	-	99	85.149	ENSGAGG00000000742	-	99	85.149	Gopherus_agassizii
ENSSHAG00000011866	-	100	91.667	ENSGGOG00000023693	RAB13	100	91.667	Gorilla_gorilla
ENSSHAG00000011866	-	100	87.745	ENSHGLG00000008749	RAB13	100	87.745	Heterocephalus_glaber_female
ENSSHAG00000011866	-	100	87.745	ENSHGLG00100013608	RAB13	100	87.745	Heterocephalus_glaber_male
ENSSHAG00000011866	-	99	74.257	ENSHCOG00000007440	rab13	97	85.311	Hippocampus_comes
ENSSHAG00000011866	-	99	77.000	ENSIPUG00000003199	rab13	99	77.000	Ictalurus_punctatus
ENSSHAG00000011866	-	100	91.667	ENSSTOG00000011222	-	100	91.667	Ictidomys_tridecemlineatus
ENSSHAG00000011866	-	100	90.196	ENSJJAG00000010575	Rab13	100	90.196	Jaculus_jaculus
ENSSHAG00000011866	-	99	76.000	ENSKMAG00000001908	rab13	99	76.000	Kryptolebias_marmoratus
ENSSHAG00000011866	-	99	79.500	ENSLBEG00000026779	rab13	99	79.500	Labrus_bergylta
ENSSHAG00000011866	-	87	76.374	ENSLACG00000008103	-	99	76.796	Latimeria_chalumnae
ENSSHAG00000011866	-	100	91.667	ENSMFAG00000041018	RAB13	100	91.667	Macaca_fascicularis
ENSSHAG00000011866	-	100	91.667	ENSMNEG00000028951	-	100	91.667	Macaca_nemestrina
ENSSHAG00000011866	-	100	91.667	ENSMLEG00000042247	-	100	91.667	Mandrillus_leucophaeus
ENSSHAG00000011866	-	99	78.218	ENSMAMG00000014602	rab13	99	78.218	Mastacembelus_armatus
ENSSHAG00000011866	-	100	89.216	ENSMAUG00000015713	Rab13	100	89.216	Mesocricetus_auratus
ENSSHAG00000011866	-	100	91.176	ENSMICG00000010340	-	100	91.176	Microcebus_murinus
ENSSHAG00000011866	-	100	90.196	ENSMOCG00000021448	Rab13	100	90.196	Microtus_ochrogaster
ENSSHAG00000011866	-	99	95.522	ENSMODG00000017295	-	99	91.322	Monodelphis_domestica
ENSSHAG00000011866	-	100	87.685	MGP_CAROLIEiJ_G0025227	Rab13	100	87.685	Mus_caroli
ENSSHAG00000011866	-	100	87.192	ENSMUSG00000027935	Rab13	100	87.192	Mus_musculus
ENSSHAG00000011866	-	99	87.129	MGP_PahariEiJ_G0026671	Rab13	99	87.129	Mus_pahari
ENSSHAG00000011866	-	100	90.686	ENSNGAG00000010309	Rab13	100	90.686	Nannospalax_galili
ENSSHAG00000011866	-	99	78.713	ENSNBRG00000004124	rab13	99	78.713	Neolamprologus_brichardi
ENSSHAG00000011866	-	100	91.667	ENSNLEG00000028944	-	100	91.667	Nomascus_leucogenys
ENSSHAG00000011866	-	100	97.537	ENSMEUG00000009667	-	100	97.537	Notamacropus_eugenii
ENSSHAG00000011866	-	62	97.619	ENSODEG00000012634	-	99	97.619	Octodon_degus
ENSSHAG00000011866	-	100	85.294	ENSODEG00000010443	-	100	85.294	Octodon_degus
ENSSHAG00000011866	-	99	78.713	ENSONIG00000006340	rab13	99	78.713	Oreochromis_niloticus
ENSSHAG00000011866	-	87	93.750	ENSOCUG00000006286	-	100	93.820	Oryctolagus_cuniculus
ENSSHAG00000011866	-	99	78.218	ENSOMEG00000008210	rab13	99	78.218	Oryzias_melastigma
ENSSHAG00000011866	-	99	89.655	ENSOGAG00000016969	-	99	89.655	Otolemur_garnettii
ENSSHAG00000011866	-	100	91.667	ENSPPAG00000028435	-	100	91.667	Pan_paniscus
ENSSHAG00000011866	-	100	88.725	ENSPPRG00000008865	-	100	88.725	Panthera_pardus
ENSSHAG00000011866	-	100	91.667	ENSPTRG00000001370	RAB13	100	91.667	Pan_troglodytes
ENSSHAG00000011866	-	100	91.667	ENSPANG00000004479	-	100	91.667	Papio_anubis
ENSSHAG00000011866	-	99	78.218	ENSPMGG00000007680	rab13	99	78.218	Periophthalmus_magnuspinnatus
ENSSHAG00000011866	-	53	99.074	ENSPEMG00000017353	-	81	99.074	Peromyscus_maniculatus_bairdii
ENSSHAG00000011866	-	100	97.537	ENSPCIG00000029350	-	100	97.537	Phascolarctos_cinereus
ENSSHAG00000011866	-	87	83.051	ENSPLAG00000005832	RAB13	95	83.051	Poecilia_latipinna
ENSSHAG00000011866	-	90	81.868	ENSPREG00000017567	rab13	99	77.228	Poecilia_reticulata
ENSSHAG00000011866	-	100	91.667	ENSPPYG00000000790	-	100	91.667	Pongo_abelii
ENSSHAG00000011866	-	100	92.647	ENSPCOG00000012189	-	100	92.647	Propithecus_coquereli
ENSSHAG00000011866	-	100	89.706	ENSPVAG00000011095	-	100	89.706	Pteropus_vampyrus
ENSSHAG00000011866	-	87	85.311	ENSPNAG00000004189	rab13	94	85.311	Pygocentrus_nattereri
ENSSHAG00000011866	-	100	91.176	ENSRNOG00000016733	Rab13	100	91.176	Rattus_norvegicus
ENSSHAG00000011866	-	100	91.667	ENSRBIG00000008552	-	100	91.667	Rhinopithecus_bieti
ENSSHAG00000011866	-	100	91.667	ENSRROG00000036885	-	100	91.667	Rhinopithecus_roxellana
ENSSHAG00000011866	-	100	92.157	ENSSBOG00000020342	-	100	92.157	Saimiri_boliviensis_boliviensis
ENSSHAG00000011866	-	100	91.176	ENSSSCG00000006564	-	100	91.176	Sus_scrofa
ENSSHAG00000011866	-	99	79.208	ENSTRUG00000024177	rab13	99	79.208	Takifugu_rubripes
ENSSHAG00000011866	-	100	91.176	ENSTBEG00000012734	-	100	91.176	Tupaia_belangeri
ENSSHAG00000011866	-	100	92.157	ENSTTRG00000011183	-	100	92.157	Tursiops_truncatus
ENSSHAG00000011866	-	67	85.401	ENSXETG00000020729	rab13	99	79.503	Xenopus_tropicalis
ENSSHAG00000011866	-	87	81.921	ENSXCOG00000019533	rab13	95	81.921	Xiphophorus_couchianus