EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000012805 (Gene tree)
Gene ID: 100925223
Gene Symbol: SRSF6
Alias: B52|SFRS6|SRP55
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 3523 bases
Position: chrGL834625.1:1106282-1109804
Accession: 100925223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000015006	RRM_1	PF00076.22	7.1e-32	1	2
ENSSHAP00000015006	RRM_1	PF00076.22	7.1e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000015131	SRSF6-201	1026	-	ENSSHAP00000015006	341 (aa)	XP_012408664	G3WHV1

Gene Model

Click here to download ENSSHAG00000012805's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG
shr05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000012805's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000012805	SRSF6	52	65.000	ENSSHAG00000002871	SRSF5	67	57.576
ENSSHAG00000012805	SRSF6	58	41.905	ENSSHAG00000002552	-	78	40.488

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000012805	SRSF6	95	90.798	ENSG00000124193	SRSF6	94	87.346	Homo_sapiens
ENSSHAG00000012805	SRSF6	55	75.132	ENSAMEG00000003710	SRSF6	54	75.401	Ailuropoda_melanoleuca
ENSSHAG00000012805	SRSF6	74	73.016	ENSACIG00000020091	-	95	78.906	Amphilophus_citrinellus
ENSSHAG00000012805	SRSF6	87	69.360	ENSACIG00000023658	-	56	86.740	Amphilophus_citrinellus
ENSSHAG00000012805	SRSF6	54	84.239	ENSAOCG00000004309	-	57	81.622	Amphiprion_ocellaris
ENSSHAG00000012805	SRSF6	55	81.579	ENSAPEG00000020746	-	65	81.622	Amphiprion_percula
ENSSHAG00000012805	SRSF6	54	88.649	ENSAPEG00000013086	-	53	87.097	Amphiprion_percula
ENSSHAG00000012805	SRSF6	54	81.967	ENSATEG00000007255	-	71	80.541	Anabas_testudineus
ENSSHAG00000012805	SRSF6	95	89.846	ENSACAG00000002061	SRSF6	52	91.398	Anolis_carolinensis
ENSSHAG00000012805	SRSF6	95	90.491	ENSANAG00000024080	SRSF6	94	87.037	Aotus_nancymaae
ENSSHAG00000012805	SRSF6	100	63.714	ENSAMXG00000042692	-	96	77.778	Astyanax_mexicanus
ENSSHAG00000012805	SRSF6	54	87.634	ENSAMXG00000003101	-	50	85.638	Astyanax_mexicanus
ENSSHAG00000012805	SRSF6	94	86.687	ENSBTAG00000008527	SRSF6	58	96.154	Bos_taurus
ENSSHAG00000012805	SRSF6	55	96.809	ENSCJAG00000048403	SRSF6	68	95.699	Callithrix_jacchus
ENSSHAG00000012805	SRSF6	55	95.745	ENSCAFG00000009289	SRSF6	58	96.154	Canis_familiaris
ENSSHAG00000012805	SRSF6	55	95.745	ENSCAFG00020013559	SRSF6	58	96.154	Canis_lupus_dingo
ENSSHAG00000012805	SRSF6	95	87.077	ENSCHIG00000015890	-	58	96.154	Capra_hircus
ENSSHAG00000012805	SRSF6	95	86.462	ENSCHIG00000009148	-	54	93.548	Capra_hircus
ENSSHAG00000012805	SRSF6	95	71.207	ENSCPOG00000011761	SRSF6	58	97.436	Cavia_porcellus
ENSSHAG00000012805	SRSF6	95	67.077	ENSCCAG00000018540	-	61	85.027	Cebus_capucinus
ENSSHAG00000012805	SRSF6	95	90.798	ENSCCAG00000026018	-	94	87.346	Cebus_capucinus
ENSSHAG00000012805	SRSF6	95	91.077	ENSCATG00000030794	SRSF6	58	97.436	Cercocebus_atys
ENSSHAG00000012805	SRSF6	95	89.602	ENSCLAG00000010247	SRSF6	58	97.436	Chinchilla_lanigera
ENSSHAG00000012805	SRSF6	95	91.077	ENSCSAG00000014022	SRSF6	54	95.699	Chlorocebus_sabaeus
ENSSHAG00000012805	SRSF6	100	85.549	ENSCPBG00000018200	SRSF6	100	89.306	Chrysemys_picta_bellii
ENSSHAG00000012805	SRSF6	95	90.154	ENSCANG00000037774	-	54	94.624	Colobus_angolensis_palliatus
ENSSHAG00000012805	SRSF6	95	89.846	ENSCGRG00001022339	Srsf6	58	94.872	Cricetulus_griseus_chok1gshd
ENSSHAG00000012805	SRSF6	54	83.957	ENSDARG00000016783	srsf6b	82	91.026	Danio_rerio
ENSSHAG00000012805	SRSF6	95	89.297	ENSDNOG00000008410	SRSF6	53	95.699	Dasypus_novemcinctus
ENSSHAG00000012805	SRSF6	95	89.329	ENSDORG00000028378	Srsf6	58	97.436	Dipodomys_ordii
ENSSHAG00000012805	SRSF6	55	95.745	ENSEASG00005023429	SRSF6	54	94.624	Equus_asinus_asinus
ENSSHAG00000012805	SRSF6	55	95.745	ENSECAG00000023932	SRSF6	57	94.624	Equus_caballus
ENSSHAG00000012805	SRSF6	54	87.097	ENSELUG00000024182	SRSF6	90	84.553	Esox_lucius
ENSSHAG00000012805	SRSF6	93	62.264	ENSELUG00000013506	SRSF6	70	88.462	Esox_lucius
ENSSHAG00000012805	SRSF6	55	95.745	ENSFCAG00000032814	SRSF6	54	94.624	Felis_catus
ENSSHAG00000012805	SRSF6	88	71.854	ENSFHEG00000023065	srsf6a	55	86.486	Fundulus_heteroclitus
ENSSHAG00000012805	SRSF6	53	72.222	ENSGMOG00000006105	srsf6a	62	70.166	Gadus_morhua
ENSSHAG00000012805	SRSF6	54	82.796	ENSGMOG00000014458	srsf6a	52	80.208	Gadus_morhua
ENSSHAG00000012805	SRSF6	100	79.487	ENSGALG00000000990	SRSF6	58	100.000	Gallus_gallus
ENSSHAG00000012805	SRSF6	88	61.607	ENSGACG00000006084	srsf6a	53	83.871	Gasterosteus_aculeatus
ENSSHAG00000012805	SRSF6	100	85.549	ENSGAGG00000003238	SRSF6	100	89.306	Gopherus_agassizii
ENSSHAG00000012805	SRSF6	95	90.798	ENSGGOG00000009808	SRSF6	94	87.346	Gorilla_gorilla
ENSSHAG00000012805	SRSF6	64	73.799	ENSHBUG00000006386	-	58	83.243	Haplochromis_burtoni
ENSSHAG00000012805	SRSF6	89	59.934	ENSHGLG00000007701	-	57	72.581	Heterocephalus_glaber_female
ENSSHAG00000012805	SRSF6	95	89.602	ENSHGLG00000007348	SRSF6	58	97.436	Heterocephalus_glaber_female
ENSSHAG00000012805	SRSF6	88	70.000	ENSHCOG00000002740	srsf6a	57	84.324	Hippocampus_comes
ENSSHAG00000012805	SRSF6	95	90.491	ENSSTOG00000010866	SRSF6	94	87.037	Ictidomys_tridecemlineatus
ENSSHAG00000012805	SRSF6	54	86.413	ENSLBEG00000007356	srsf6a	52	86.022	Labrus_bergylta
ENSSHAG00000012805	SRSF6	93	83.072	ENSLACG00000005466	SRSF6	54	94.054	Latimeria_chalumnae
ENSSHAG00000012805	SRSF6	95	91.077	ENSMFAG00000036925	SRSF6	58	97.436	Macaca_fascicularis
ENSSHAG00000012805	SRSF6	95	91.077	ENSMMUG00000006742	SRSF6	58	97.436	Macaca_mulatta
ENSSHAG00000012805	SRSF6	94	89.783	ENSMNEG00000038270	-	54	94.624	Macaca_nemestrina
ENSSHAG00000012805	SRSF6	95	90.462	ENSMNEG00000027392	-	58	94.872	Macaca_nemestrina
ENSSHAG00000012805	SRSF6	54	88.108	ENSMAMG00000017161	srsf6a	53	86.559	Mastacembelus_armatus
ENSSHAG00000012805	SRSF6	68	76.724	ENSMZEG00005008032	-	57	83.243	Maylandia_zebra
ENSSHAG00000012805	SRSF6	73	76.863	ENSMGAG00000000888	SRSF6	84	58.268	Meleagris_gallopavo
ENSSHAG00000012805	SRSF6	55	96.277	ENSMICG00000008537	SRSF6	58	97.436	Microcebus_murinus
ENSSHAG00000012805	SRSF6	100	99.413	ENSMODG00000003107	SRSF6	100	99.413	Monodelphis_domestica
ENSSHAG00000012805	SRSF6	95	86.687	MGP_CAROLIEiJ_G0024606	Srsf6	58	94.872	Mus_caroli
ENSSHAG00000012805	SRSF6	95	86.997	ENSMUSG00000016921	Srsf6	58	94.872	Mus_musculus
ENSSHAG00000012805	SRSF6	95	86.687	MGP_PahariEiJ_G0026050	Srsf6	58	94.872	Mus_pahari
ENSSHAG00000012805	SRSF6	95	86.997	MGP_SPRETEiJ_G0025528	Srsf6	58	94.872	Mus_spretus
ENSSHAG00000012805	SRSF6	55	95.745	ENSMPUG00000017692	SRSF6	64	94.624	Mustela_putorius_furo
ENSSHAG00000012805	SRSF6	94	70.393	ENSMLUG00000016618	SRSF6	54	62.911	Myotis_lucifugus
ENSSHAG00000012805	SRSF6	95	88.615	ENSNGAG00000017560	Srsf6	58	97.436	Nannospalax_galili
ENSSHAG00000012805	SRSF6	53	88.525	ENSNBRG00000001846	-	52	86.559	Neolamprologus_brichardi
ENSSHAG00000012805	SRSF6	54	82.609	ENSNBRG00000014709	-	58	83.243	Neolamprologus_brichardi
ENSSHAG00000012805	SRSF6	95	90.798	ENSNLEG00000006524	SRSF6	94	87.346	Nomascus_leucogenys
ENSSHAG00000012805	SRSF6	90	99.020	ENSMEUG00000014615	SRSF6	100	99.020	Notamacropus_eugenii
ENSSHAG00000012805	SRSF6	54	85.405	ENSONIG00000020247	-	53	84.324	Oreochromis_niloticus
ENSSHAG00000012805	SRSF6	55	71.569	ENSOCUG00000009785	-	63	75.130	Oryctolagus_cuniculus
ENSSHAG00000012805	SRSF6	75	56.250	ENSOCUG00000023999	-	70	54.396	Oryctolagus_cuniculus
ENSSHAG00000012805	SRSF6	55	96.277	ENSOGAG00000014468	SRSF6	54	95.161	Otolemur_garnettii
ENSSHAG00000012805	SRSF6	94	82.353	ENSOARG00000003117	SRSF6	53	89.247	Ovis_aries
ENSSHAG00000012805	SRSF6	91	76.774	ENSPPAG00000043131	-	58	82.353	Pan_paniscus
ENSSHAG00000012805	SRSF6	95	90.491	ENSPPAG00000034327	-	94	87.037	Pan_paniscus
ENSSHAG00000012805	SRSF6	55	95.745	ENSPPRG00000008917	SRSF6	54	94.624	Panthera_pardus
ENSSHAG00000012805	SRSF6	91	76.774	ENSPTRG00000046274	-	58	82.353	Pan_troglodytes
ENSSHAG00000012805	SRSF6	95	90.491	ENSPTRG00000044686	-	58	97.436	Pan_troglodytes
ENSSHAG00000012805	SRSF6	95	91.077	ENSPANG00000035224	SRSF6	58	97.436	Papio_anubis
ENSSHAG00000012805	SRSF6	93	68.731	ENSPKIG00000018463	-	77	94.872	Paramormyrops_kingsleyae
ENSSHAG00000012805	SRSF6	52	76.503	ENSPKIG00000015703	-	95	62.667	Paramormyrops_kingsleyae
ENSSHAG00000012805	SRSF6	90	71.242	ENSPMGG00000014963	srsf6a	55	87.568	Periophthalmus_magnuspinnatus
ENSSHAG00000012805	SRSF6	100	99.707	ENSPCIG00000003820	SRSF6	100	99.707	Phascolarctos_cinereus
ENSSHAG00000012805	SRSF6	54	85.326	ENSPFOG00000006437	srsf6a	50	85.263	Poecilia_formosa
ENSSHAG00000012805	SRSF6	88	64.815	ENSPLAG00000009243	srsf6a	80	82.677	Poecilia_latipinna
ENSSHAG00000012805	SRSF6	54	87.500	ENSPMEG00000006042	SRSF6	54	87.568	Poecilia_mexicana
ENSSHAG00000012805	SRSF6	95	90.798	ENSPPYG00000011019	SRSF6	94	87.346	Pongo_abelii
ENSSHAG00000012805	SRSF6	55	96.237	ENSPCAG00000010954	SRSF6	56	95.161	Procavia_capensis
ENSSHAG00000012805	SRSF6	55	96.277	ENSPCOG00000026364	SRSF6	58	97.436	Propithecus_coquereli
ENSSHAG00000012805	SRSF6	95	87.616	ENSPVAG00000015232	SRSF6	54	95.161	Pteropus_vampyrus
ENSSHAG00000012805	SRSF6	53	88.525	ENSPNYG00000011272	-	51	86.559	Pundamilia_nyererei
ENSSHAG00000012805	SRSF6	54	82.609	ENSPNYG00000004944	-	58	83.243	Pundamilia_nyererei
ENSSHAG00000012805	SRSF6	95	86.997	ENSRNOG00000006380	Srsf6	55	94.624	Rattus_norvegicus
ENSSHAG00000012805	SRSF6	94	85.358	ENSRBIG00000041414	SRSF6	62	97.500	Rhinopithecus_bieti
ENSSHAG00000012805	SRSF6	95	87.926	ENSRROG00000029989	SRSF6	58	97.436	Rhinopithecus_roxellana
ENSSHAG00000012805	SRSF6	95	90.798	ENSSBOG00000033708	-	94	87.346	Saimiri_boliviensis_boliviensis
ENSSHAG00000012805	SRSF6	94	66.667	ENSSBOG00000034078	-	54	75.824	Saimiri_boliviensis_boliviensis
ENSSHAG00000012805	SRSF6	85	70.588	ENSSFOG00015015169	SRSF6	60	88.108	Scleropages_formosus
ENSSHAG00000012805	SRSF6	69	74.468	ENSSMAG00000017447	-	55	78.919	Scophthalmus_maximus
ENSSHAG00000012805	SRSF6	54	88.108	ENSSDUG00000016097	srsf6a	53	86.559	Seriola_dumerili
ENSSHAG00000012805	SRSF6	54	88.108	ENSSLDG00000022841	srsf6a	54	86.559	Seriola_lalandi_dorsalis
ENSSHAG00000012805	SRSF6	100	80.814	ENSSPUG00000004967	SRSF6	100	82.267	Sphenodon_punctatus
ENSSHAG00000012805	SRSF6	77	70.412	ENSSPAG00000002362	srsf6a	67	86.772	Stegastes_partitus
ENSSHAG00000012805	SRSF6	95	86.769	ENSSSCG00000007362	SRSF6	61	94.624	Sus_scrofa
ENSSHAG00000012805	SRSF6	88	71.429	ENSTNIG00000001692	srsf6a	57	86.022	Tetraodon_nigroviridis
ENSSHAG00000012805	SRSF6	85	82.818	ENSTBEG00000013448	SRSF6	93	82.131	Tupaia_belangeri
ENSSHAG00000012805	SRSF6	55	95.745	ENSUAMG00000003559	SRSF6	58	96.154	Ursus_americanus
ENSSHAG00000012805	SRSF6	54	86.957	ENSXMAG00000021849	srsf6a	55	85.946	Xiphophorus_maculatus