EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000012896 (Gene tree)
Gene ID: 100922471
Gene Symbol: -
Alias: -
Full Name: DEAD-box helicase 42
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 28472 bases
Position: chrGL856832.1:1126428-1154899
Accession: 100922471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000015114	ResIII	PF04851.15	9.6e-07	1	1
ENSSHAP00000015114	DEAD	PF00270.29	2.5e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000015240	-	2832	-	ENSSHAP00000015114	943 (aa)	XP_003768499	G3WI59

Gene Model

Click here to download ENSSHAG00000012896's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000012896's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000012896	-	57	38.530	ENSSHAG00000012772	DDX5	70	41.152
ENSSHAG00000012896	-	71	67.560	ENSSHAG00000007919	-	99	67.560

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000012896	-	100	91.534	ENSG00000198231	DDX42	100	98.077	Homo_sapiens
ENSSHAG00000012896	-	88	76.786	ENSAPOG00000017675	ddx42	99	73.817	Acanthochromis_polyacanthus
ENSSHAG00000012896	-	100	91.755	ENSAMEG00000003200	DDX42	100	92.072	Ailuropoda_melanoleuca
ENSSHAG00000012896	-	85	70.859	ENSACIG00000007376	ddx42	99	72.030	Amphilophus_citrinellus
ENSSHAG00000012896	-	88	77.078	ENSAOCG00000003520	ddx42	99	72.298	Amphiprion_ocellaris
ENSSHAG00000012896	-	100	71.264	ENSAPEG00000000984	ddx42	99	72.450	Amphiprion_percula
ENSSHAG00000012896	-	100	70.351	ENSATEG00000022920	ddx42	99	72.471	Anabas_testudineus
ENSSHAG00000012896	-	100	83.403	ENSAPLG00000010544	DDX42	100	83.945	Anas_platyrhynchos
ENSSHAG00000012896	-	100	83.403	ENSACAG00000003994	DDX42	99	83.648	Anolis_carolinensis
ENSSHAG00000012896	-	100	91.314	ENSANAG00000035693	DDX42	99	93.768	Aotus_nancymaae
ENSSHAG00000012896	-	88	76.758	ENSACLG00000025113	ddx42	99	72.356	Astatotilapia_calliptera
ENSSHAG00000012896	-	89	74.971	ENSAMXG00000011435	ddx42	100	69.929	Astyanax_mexicanus
ENSSHAG00000012896	-	100	89.474	ENSBTAG00000021058	DDX42	97	93.534	Bos_taurus
ENSSHAG00000012896	-	63	52.441	WBGene00008119	C46F11.4	78	52.665	Caenorhabditis_elegans
ENSSHAG00000012896	-	100	91.631	ENSCJAG00000019649	DDX42	99	96.364	Callithrix_jacchus
ENSSHAG00000012896	-	100	91.746	ENSCAFG00000012818	DDX42	100	92.063	Canis_familiaris
ENSSHAG00000012896	-	100	91.852	ENSCAFG00020026631	DDX42	100	92.169	Canis_lupus_dingo
ENSSHAG00000012896	-	100	90.411	ENSCHIG00000014431	DDX42	100	91.149	Capra_hircus
ENSSHAG00000012896	-	100	90.275	ENSTSYG00000001380	DDX42	100	90.486	Carlito_syrichta
ENSSHAG00000012896	-	72	73.490	ENSCAPG00000013621	DDX42	94	73.196	Cavia_aperea
ENSSHAG00000012896	-	100	91.438	ENSCPOG00000005633	DDX42	100	91.649	Cavia_porcellus
ENSSHAG00000012896	-	100	86.335	ENSCCAG00000020612	DDX42	97	93.991	Cebus_capucinus
ENSSHAG00000012896	-	100	91.852	ENSCATG00000030490	DDX42	100	92.169	Cercocebus_atys
ENSSHAG00000012896	-	100	92.169	ENSCLAG00000003497	DDX42	100	91.958	Chinchilla_lanigera
ENSSHAG00000012896	-	100	88.211	ENSCSAG00000003914	DDX42	100	88.526	Chlorocebus_sabaeus
ENSSHAG00000012896	-	79	93.750	ENSCHOG00000006241	DDX42	78	93.750	Choloepus_hoffmanni
ENSSHAG00000012896	-	100	84.974	ENSCPBG00000026682	DDX42	100	85.389	Chrysemys_picta_bellii
ENSSHAG00000012896	-	100	91.852	ENSCANG00000034663	DDX42	99	94.269	Colobus_angolensis_palliatus
ENSSHAG00000012896	-	100	90.890	ENSCGRG00001009775	Ddx42	100	91.102	Cricetulus_griseus_chok1gshd
ENSSHAG00000012896	-	100	90.890	ENSCGRG00000011718	Ddx42	100	91.102	Cricetulus_griseus_crigri
ENSSHAG00000012896	-	91	73.495	ENSCSEG00000021574	ddx42	99	70.052	Cynoglossus_semilaevis
ENSSHAG00000012896	-	100	70.011	ENSCVAG00000011404	ddx42	99	71.819	Cyprinodon_variegatus
ENSSHAG00000012896	-	100	69.853	ENSDARG00000037928	ddx42	99	70.393	Danio_rerio
ENSSHAG00000012896	-	100	85.232	ENSDNOG00000007961	DDX42	100	86.287	Dasypus_novemcinctus
ENSSHAG00000012896	-	100	83.228	ENSDORG00000004199	Ddx42	100	82.911	Dipodomys_ordii
ENSSHAG00000012896	-	65	60.353	FBgn0036104	CG6418	87	56.628	Drosophila_melanogaster
ENSSHAG00000012896	-	82	71.338	ENSEBUG00000001155	ddx42	93	70.828	Eptatretus_burgeri
ENSSHAG00000012896	-	100	91.852	ENSEASG00005013089	DDX42	99	94.302	Equus_asinus_asinus
ENSSHAG00000012896	-	100	91.852	ENSECAG00000022684	DDX42	100	92.698	Equus_caballus
ENSSHAG00000012896	-	67	100.000	ENSEEUG00000009144	DDX42	85	100.000	Erinaceus_europaeus
ENSSHAG00000012896	-	100	69.456	ENSELUG00000020593	ddx42	100	69.665	Esox_lucius
ENSSHAG00000012896	-	100	91.429	ENSFCAG00000003499	DDX42	100	92.381	Felis_catus
ENSSHAG00000012896	-	97	83.370	ENSFALG00000004675	DDX42	79	83.060	Ficedula_albicollis
ENSSHAG00000012896	-	100	91.543	ENSFDAG00000020516	DDX42	100	91.649	Fukomys_damarensis
ENSSHAG00000012896	-	100	69.150	ENSFHEG00000023290	ddx42	99	71.174	Fundulus_heteroclitus
ENSSHAG00000012896	-	75	77.715	ENSGMOG00000004595	ddx42	88	77.292	Gadus_morhua
ENSSHAG00000012896	-	100	82.595	ENSGALG00000000581	DDX42	100	82.698	Gallus_gallus
ENSSHAG00000012896	-	92	73.227	ENSGAFG00000011846	ddx42	96	73.678	Gambusia_affinis
ENSSHAG00000012896	-	99	68.004	ENSGACG00000009782	ddx42	100	67.756	Gasterosteus_aculeatus
ENSSHAG00000012896	-	100	85.536	ENSGAGG00000024411	DDX42	99	84.912	Gopherus_agassizii
ENSSHAG00000012896	-	100	91.640	ENSGGOG00000006779	DDX42	100	91.958	Gorilla_gorilla
ENSSHAG00000012896	-	88	76.996	ENSHBUG00000008705	ddx42	99	72.670	Haplochromis_burtoni
ENSSHAG00000012896	-	100	87.288	ENSHGLG00000010024	DDX42	100	87.076	Heterocephalus_glaber_female
ENSSHAG00000012896	-	100	91.429	ENSHGLG00100004479	-	100	91.640	Heterocephalus_glaber_male
ENSSHAG00000012896	-	94	69.379	ENSHGLG00100007138	-	95	69.266	Heterocephalus_glaber_male
ENSSHAG00000012896	-	82	78.005	ENSHCOG00000003357	ddx42	99	73.055	Hippocampus_comes
ENSSHAG00000012896	-	79	79.524	ENSIPUG00000013327	ddx42	100	69.634	Ictalurus_punctatus
ENSSHAG00000012896	-	100	92.397	ENSSTOG00000008922	DDX42	100	92.186	Ictidomys_tridecemlineatus
ENSSHAG00000012896	-	100	90.688	ENSJJAG00000011727	Ddx42	100	90.688	Jaculus_jaculus
ENSSHAG00000012896	-	100	69.199	ENSKMAG00000009914	ddx42	99	72.088	Kryptolebias_marmoratus
ENSSHAG00000012896	-	100	65.828	ENSLBEG00000004687	ddx42	100	66.040	Labrus_bergylta
ENSSHAG00000012896	-	99	75.847	ENSLACG00000013476	DDX42	97	77.696	Latimeria_chalumnae
ENSSHAG00000012896	-	100	74.313	ENSLOCG00000011764	ddx42	100	74.316	Lepisosteus_oculatus
ENSSHAG00000012896	-	100	91.111	ENSLAFG00000003249	DDX42	100	92.169	Loxodonta_africana
ENSSHAG00000012896	-	100	91.958	ENSMFAG00000031356	DDX42	100	92.275	Macaca_fascicularis
ENSSHAG00000012896	-	100	91.843	ENSMMUG00000016762	DDX42	100	91.737	Macaca_mulatta
ENSSHAG00000012896	-	100	91.958	ENSMNEG00000038250	DDX42	100	92.275	Macaca_nemestrina
ENSSHAG00000012896	-	100	91.852	ENSMLEG00000043080	DDX42	100	92.169	Mandrillus_leucophaeus
ENSSHAG00000012896	-	88	77.419	ENSMAMG00000021888	ddx42	98	72.158	Mastacembelus_armatus
ENSSHAG00000012896	-	88	76.758	ENSMZEG00005023103	ddx42	99	72.356	Maylandia_zebra
ENSSHAG00000012896	-	100	83.160	ENSMGAG00000001822	DDX42	100	83.160	Meleagris_gallopavo
ENSSHAG00000012896	-	75	94.334	ENSMAUG00000020774	-	94	94.051	Mesocricetus_auratus
ENSSHAG00000012896	-	100	91.640	ENSMICG00000009952	DDX42	100	91.419	Microcebus_murinus
ENSSHAG00000012896	-	100	90.042	ENSMOCG00000015504	Ddx42	100	89.831	Microtus_ochrogaster
ENSSHAG00000012896	-	91	70.867	ENSMMOG00000016963	ddx42	88	70.011	Mola_mola
ENSSHAG00000012896	-	50	99.786	ENSMODG00000009917	-	98	99.786	Monodelphis_domestica
ENSSHAG00000012896	-	100	71.368	ENSMALG00000007800	ddx42	99	72.211	Monopterus_albus
ENSSHAG00000012896	-	100	90.678	MGP_CAROLIEiJ_G0017314	Ddx42	100	90.890	Mus_caroli
ENSSHAG00000012896	-	100	90.678	ENSMUSG00000020705	Ddx42	100	90.890	Mus_musculus
ENSSHAG00000012896	-	76	97.615	MGP_PahariEiJ_G0018444	-	100	97.615	Mus_pahari
ENSSHAG00000012896	-	100	90.678	MGP_SPRETEiJ_G0018158	Ddx42	100	90.890	Mus_spretus
ENSSHAG00000012896	-	100	90.957	ENSMPUG00000014921	DDX42	100	91.903	Mustela_putorius_furo
ENSSHAG00000012896	-	100	89.802	ENSMLUG00000011645	DDX42	100	90.719	Myotis_lucifugus
ENSSHAG00000012896	-	100	91.226	ENSNGAG00000021897	Ddx42	100	91.015	Nannospalax_galili
ENSSHAG00000012896	-	88	75.566	ENSNBRG00000004466	ddx42	99	71.174	Neolamprologus_brichardi
ENSSHAG00000012896	-	100	91.534	ENSNLEG00000004248	DDX42	99	93.983	Nomascus_leucogenys
ENSSHAG00000012896	-	74	93.860	ENSMEUG00000013227	-	85	93.860	Notamacropus_eugenii
ENSSHAG00000012896	-	100	90.813	ENSOPRG00000014960	DDX42	100	91.552	Ochotona_princeps
ENSSHAG00000012896	-	100	88.571	ENSODEG00000007810	DDX42	100	88.360	Octodon_degus
ENSSHAG00000012896	-	88	76.996	ENSONIG00000000734	ddx42	99	72.432	Oreochromis_niloticus
ENSSHAG00000012896	-	57	92.950	ENSOANG00000000265	DDX42	100	92.950	Ornithorhynchus_anatinus
ENSSHAG00000012896	-	94	92.721	ENSOCUG00000004304	DDX42	88	92.945	Oryctolagus_cuniculus
ENSSHAG00000012896	-	100	70.588	ENSORLG00000002395	ddx42	100	70.168	Oryzias_latipes
ENSSHAG00000012896	-	100	69.789	ENSORLG00020011621	ddx42	100	72.071	Oryzias_latipes_hni
ENSSHAG00000012896	-	100	70.168	ENSORLG00015004487	ddx42	100	71.849	Oryzias_latipes_hsok
ENSSHAG00000012896	-	82	79.949	ENSOMEG00000020093	ddx42	100	72.000	Oryzias_melastigma
ENSSHAG00000012896	-	100	91.746	ENSOGAG00000006872	DDX42	100	91.958	Otolemur_garnettii
ENSSHAG00000012896	-	100	89.353	ENSOARG00000013540	DDX42	100	90.292	Ovis_aries
ENSSHAG00000012896	-	100	91.534	ENSPPAG00000007496	DDX42	100	91.852	Pan_paniscus
ENSSHAG00000012896	-	100	91.640	ENSPPRG00000002740	DDX42	100	92.593	Panthera_pardus
ENSSHAG00000012896	-	100	91.746	ENSPTIG00000009932	DDX42	100	92.698	Panthera_tigris_altaica
ENSSHAG00000012896	-	100	91.534	ENSPTRG00000009523	DDX42	100	91.852	Pan_troglodytes
ENSSHAG00000012896	-	100	91.746	ENSPANG00000020990	DDX42	100	92.063	Papio_anubis
ENSSHAG00000012896	-	100	68.955	ENSPKIG00000002901	ddx42	100	69.799	Paramormyrops_kingsleyae
ENSSHAG00000012896	-	85	92.298	ENSPSIG00000010289	DDX42	98	92.422	Pelodiscus_sinensis
ENSSHAG00000012896	-	90	71.462	ENSPMGG00000009323	ddx42	100	67.891	Periophthalmus_magnuspinnatus
ENSSHAG00000012896	-	100	90.784	ENSPEMG00000006755	Ddx42	100	90.996	Peromyscus_maniculatus_bairdii
ENSSHAG00000012896	-	79	72.477	ENSPMAG00000005580	ddx42	100	72.870	Petromyzon_marinus
ENSSHAG00000012896	-	100	99.046	ENSPCIG00000009093	DDX42	100	99.046	Phascolarctos_cinereus
ENSSHAG00000012896	-	100	70.301	ENSPFOG00000014104	ddx42	100	72.199	Poecilia_formosa
ENSSHAG00000012896	-	100	70.301	ENSPLAG00000010522	ddx42	100	72.199	Poecilia_latipinna
ENSSHAG00000012896	-	100	70.785	ENSPMEG00000010744	ddx42	100	72.320	Poecilia_mexicana
ENSSHAG00000012896	-	100	69.097	ENSPREG00000009926	ddx42	100	71.562	Poecilia_reticulata
ENSSHAG00000012896	-	100	89.746	ENSPPYG00000008531	DDX42	100	90.063	Pongo_abelii
ENSSHAG00000012896	-	92	85.534	ENSPCAG00000002474	DDX42	100	86.452	Procavia_capensis
ENSSHAG00000012896	-	100	81.905	ENSPCOG00000001559	DDX42	98	85.903	Propithecus_coquereli
ENSSHAG00000012896	-	100	88.995	ENSPVAG00000000160	DDX42	100	88.889	Pteropus_vampyrus
ENSSHAG00000012896	-	73	74.713	ENSPNYG00000013954	ddx42	97	69.914	Pundamilia_nyererei
ENSSHAG00000012896	-	77	80.245	ENSPNAG00000017352	ddx42	100	68.948	Pygocentrus_nattereri
ENSSHAG00000012896	-	100	90.572	ENSRNOG00000009474	Ddx42	100	90.784	Rattus_norvegicus
ENSSHAG00000012896	-	100	91.852	ENSRBIG00000004781	DDX42	99	94.269	Rhinopithecus_bieti
ENSSHAG00000012896	-	100	91.852	ENSRROG00000029794	DDX42	100	92.169	Rhinopithecus_roxellana
ENSSHAG00000012896	-	100	91.631	ENSSBOG00000029624	DDX42	100	91.958	Saimiri_boliviensis_boliviensis
ENSSHAG00000012896	-	80	81.866	ENSSFOG00015014064	ddx42	81	81.866	Scleropages_formosus
ENSSHAG00000012896	-	100	70.452	ENSSMAG00000009077	ddx42	100	71.811	Scophthalmus_maximus
ENSSHAG00000012896	-	99	70.894	ENSSDUG00000022221	ddx42	99	71.832	Seriola_dumerili
ENSSHAG00000012896	-	99	70.755	ENSSLDG00000018483	ddx42	100	71.203	Seriola_lalandi_dorsalis
ENSSHAG00000012896	-	100	90.265	ENSSARG00000009847	DDX42	100	91.111	Sorex_araneus
ENSSHAG00000012896	-	100	85.010	ENSSPUG00000018806	DDX42	100	84.696	Sphenodon_punctatus
ENSSHAG00000012896	-	88	76.905	ENSSPAG00000013055	ddx42	99	72.327	Stegastes_partitus
ENSSHAG00000012896	-	86	89.461	ENSSSCG00000017289	DDX42	97	90.441	Sus_scrofa
ENSSHAG00000012896	-	100	84.050	ENSTGUG00000001931	DDX42	100	83.736	Taeniopygia_guttata
ENSSHAG00000012896	-	99	69.556	ENSTRUG00000010711	ddx42	99	81.333	Takifugu_rubripes
ENSSHAG00000012896	-	81	91.853	ENSTBEG00000010159	DDX42	100	91.853	Tupaia_belangeri
ENSSHAG00000012896	-	100	91.226	ENSTTRG00000006962	DDX42	100	91.860	Tursiops_truncatus
ENSSHAG00000012896	-	100	91.755	ENSUAMG00000007321	DDX42	100	92.072	Ursus_americanus
ENSSHAG00000012896	-	100	91.438	ENSUMAG00000017438	DDX42	100	91.755	Ursus_maritimus
ENSSHAG00000012896	-	100	82.222	ENSVPAG00000009633	DDX42	100	83.069	Vicugna_pacos
ENSSHAG00000012896	-	100	91.534	ENSVVUG00000006095	DDX42	100	92.381	Vulpes_vulpes
ENSSHAG00000012896	-	100	76.580	ENSXETG00000003245	ddx42	100	76.062	Xenopus_tropicalis
ENSSHAG00000012896	-	85	70.522	ENSXCOG00000017560	ddx42	97	71.677	Xiphophorus_couchianus
ENSSHAG00000012896	-	100	71.338	ENSXMAG00000008138	ddx42	100	72.421	Xiphophorus_maculatus