EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000012953 (Gene tree)
Gene ID: 100916095
Gene Symbol: MBD4
Alias: MED1
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 9261 bases
Position: chrGL841598.1:1136650-1145910
Accession: 6919
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000015187	MBD	PF01429.19	1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000015313	MBD4-201	2055	-	ENSSHAP00000015187	565 (aa)	-	G3WID2

Gene Model

Click here to download ENSSHAG00000012953's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000012953's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000012953	MBD4	94	56.932	ENSG00000129071	MBD4	69	91.111	Homo_sapiens
ENSSHAG00000012953	MBD4	99	56.106	ENSAMEG00000004562	MBD4	98	56.106	Ailuropoda_melanoleuca
ENSSHAG00000012953	MBD4	99	52.686	ENSBTAG00000021645	MBD4	99	54.336	Bos_taurus
ENSSHAG00000012953	MBD4	96	54.909	ENSCJAG00000017293	MBD4	95	54.909	Callithrix_jacchus
ENSSHAG00000012953	MBD4	99	55.379	ENSCAFG00000004867	MBD4	98	55.379	Canis_familiaris
ENSSHAG00000012953	MBD4	99	55.379	ENSCAFG00020007082	MBD4	98	55.379	Canis_lupus_dingo
ENSSHAG00000012953	MBD4	99	53.996	ENSCHIG00000009760	MBD4	99	53.996	Capra_hircus
ENSSHAG00000012953	MBD4	94	55.638	ENSCCAG00000029796	MBD4	93	55.638	Cebus_capucinus
ENSSHAG00000012953	MBD4	92	56.391	ENSCATG00000035211	MBD4	93	56.007	Cercocebus_atys
ENSSHAG00000012953	MBD4	93	54.869	ENSCLAG00000008974	MBD4	94	54.869	Chinchilla_lanigera
ENSSHAG00000012953	MBD4	92	56.579	ENSCSAG00000009037	MBD4	93	56.192	Chlorocebus_sabaeus
ENSSHAG00000012953	MBD4	96	49.225	ENSCPBG00000014704	MBD4	100	49.225	Chrysemys_picta_bellii
ENSSHAG00000012953	MBD4	92	56.579	ENSCANG00000007120	MBD4	93	56.192	Colobus_angolensis_palliatus
ENSSHAG00000012953	MBD4	94	50.998	ENSCGRG00001003507	Mbd4	94	52.381	Cricetulus_griseus_chok1gshd
ENSSHAG00000012953	MBD4	94	50.998	ENSCGRG00000010974	Mbd4	94	52.381	Cricetulus_griseus_crigri
ENSSHAG00000012953	MBD4	94	57.807	ENSDNOG00000049619	MBD4	94	57.807	Dasypus_novemcinctus
ENSSHAG00000012953	MBD4	79	49.446	ENSDORG00000000902	-	93	49.446	Dipodomys_ordii
ENSSHAG00000012953	MBD4	52	63.277	ENSEBUG00000010816	mbd4	63	63.277	Eptatretus_burgeri
ENSSHAG00000012953	MBD4	99	53.968	ENSEASG00005014800	MBD4	99	53.968	Equus_asinus_asinus
ENSSHAG00000012953	MBD4	99	53.616	ENSECAG00000022106	MBD4	99	53.616	Equus_caballus
ENSSHAG00000012953	MBD4	90	52.601	ENSEEUG00000011459	MBD4	95	52.601	Erinaceus_europaeus
ENSSHAG00000012953	MBD4	94	57.542	ENSFCAG00000000083	MBD4	93	57.542	Felis_catus
ENSSHAG00000012953	MBD4	82	45.382	ENSFALG00000013663	MBD4	99	44.553	Ficedula_albicollis
ENSSHAG00000012953	MBD4	92	50.536	ENSGAGG00000018644	MBD4	96	50.536	Gopherus_agassizii
ENSSHAG00000012953	MBD4	94	56.377	ENSGGOG00000010698	MBD4	93	56.377	Gorilla_gorilla
ENSSHAG00000012953	MBD4	96	53.916	ENSHGLG00000009034	MBD4	96	53.916	Heterocephalus_glaber_female
ENSSHAG00000012953	MBD4	96	54.098	ENSHGLG00100000135	MBD4	96	54.098	Heterocephalus_glaber_male
ENSSHAG00000012953	MBD4	96	54.348	ENSSTOG00000020663	MBD4	95	54.348	Ictidomys_tridecemlineatus
ENSSHAG00000012953	MBD4	86	44.752	ENSLOCG00000013054	MBD4	98	44.950	Lepisosteus_oculatus
ENSSHAG00000012953	MBD4	95	54.348	ENSLAFG00000010609	MBD4	94	54.348	Loxodonta_africana
ENSSHAG00000012953	MBD4	92	56.586	ENSMFAG00000002266	MBD4	93	56.204	Macaca_fascicularis
ENSSHAG00000012953	MBD4	92	56.377	ENSMMUG00000012723	MBD4	93	56.000	Macaca_mulatta
ENSSHAG00000012953	MBD4	88	54.757	ENSMNEG00000029752	MBD4	92	54.389	Macaca_nemestrina
ENSSHAG00000012953	MBD4	92	56.579	ENSMLEG00000024859	MBD4	93	56.192	Mandrillus_leucophaeus
ENSSHAG00000012953	MBD4	96	56.987	ENSMICG00000008022	MBD4	95	56.987	Microcebus_murinus
ENSSHAG00000012953	MBD4	58	35.588	ENSMOCG00000002466	-	82	35.882	Microtus_ochrogaster
ENSSHAG00000012953	MBD4	87	79.555	ENSMODG00000006399	-	100	79.150	Monodelphis_domestica
ENSSHAG00000012953	MBD4	94	53.480	MGP_CAROLIEiJ_G0028760	Mbd4	94	53.480	Mus_caroli
ENSSHAG00000012953	MBD4	94	54.779	ENSMUSG00000030322	Mbd4	94	54.512	Mus_musculus
ENSSHAG00000012953	MBD4	96	54.367	MGP_PahariEiJ_G0022511	-	95	54.011	Mus_pahari
ENSSHAG00000012953	MBD4	96	52.995	MGP_SPRETEiJ_G0029788	Mbd4	96	52.995	Mus_spretus
ENSSHAG00000012953	MBD4	99	54.101	ENSMPUG00000017195	MBD4	98	54.101	Mustela_putorius_furo
ENSSHAG00000012953	MBD4	93	57.885	ENSMLUG00000014766	MBD4	97	57.885	Myotis_lucifugus
ENSSHAG00000012953	MBD4	94	56.481	ENSNLEG00000005337	MBD4	93	56.296	Nomascus_leucogenys
ENSSHAG00000012953	MBD4	54	95.652	ENSMEUG00000015599	-	77	95.652	Notamacropus_eugenii
ENSSHAG00000012953	MBD4	98	53.750	ENSOPRG00000000473	MBD4	96	53.750	Ochotona_princeps
ENSSHAG00000012953	MBD4	70	46.635	ENSOANG00000004589	-	94	46.635	Ornithorhynchus_anatinus
ENSSHAG00000012953	MBD4	94	53.578	ENSOCUG00000013006	MBD4	93	53.297	Oryctolagus_cuniculus
ENSSHAG00000012953	MBD4	57	78.698	ENSORLG00000011049	mbd4	74	78.698	Oryzias_latipes
ENSSHAG00000012953	MBD4	97	53.734	ENSOGAG00000010236	MBD4	95	53.707	Otolemur_garnettii
ENSSHAG00000012953	MBD4	99	54.529	ENSOARG00000014699	MBD4	99	54.529	Ovis_aries
ENSSHAG00000012953	MBD4	94	56.007	ENSPPAG00000036528	MBD4	93	56.007	Pan_paniscus
ENSSHAG00000012953	MBD4	94	57.169	ENSPPRG00000016480	MBD4	93	57.169	Panthera_pardus
ENSSHAG00000012953	MBD4	94	56.377	ENSPTRG00000015377	MBD4	93	56.377	Pan_troglodytes
ENSSHAG00000012953	MBD4	94	57.301	ENSPANG00000015047	MBD4	93	57.301	Papio_anubis
ENSSHAG00000012953	MBD4	93	48.084	ENSPSIG00000007892	MBD4	95	48.084	Pelodiscus_sinensis
ENSSHAG00000012953	MBD4	84	49.598	ENSPEMG00000006226	Mbd4	90	49.197	Peromyscus_maniculatus_bairdii
ENSSHAG00000012953	MBD4	93	82.955	ENSPCIG00000002276	-	100	82.955	Phascolarctos_cinereus
ENSSHAG00000012953	MBD4	94	55.292	ENSPPYG00000013417	MBD4	93	55.292	Pongo_abelii
ENSSHAG00000012953	MBD4	90	53.372	ENSPCAG00000012915	MBD4	93	53.846	Procavia_capensis
ENSSHAG00000012953	MBD4	99	54.657	ENSPVAG00000005238	MBD4	98	54.657	Pteropus_vampyrus
ENSSHAG00000012953	MBD4	94	54.495	ENSRNOG00000010919	Mbd4	94	54.495	Rattus_norvegicus
ENSSHAG00000012953	MBD4	92	56.391	ENSRBIG00000027722	MBD4	93	56.007	Rhinopithecus_bieti
ENSSHAG00000012953	MBD4	92	56.203	ENSRROG00000029136	MBD4	93	55.823	Rhinopithecus_roxellana
ENSSHAG00000012953	MBD4	94	56.852	ENSSBOG00000016810	MBD4	93	56.667	Saimiri_boliviensis_boliviensis
ENSSHAG00000012953	MBD4	81	49.680	ENSSARG00000004496	-	80	49.680	Sorex_araneus
ENSSHAG00000012953	MBD4	92	48.364	ENSSPUG00000017344	MBD4	98	48.364	Sphenodon_punctatus
ENSSHAG00000012953	MBD4	96	57.971	ENSSSCG00000033303	MBD4	95	58.152	Sus_scrofa
ENSSHAG00000012953	MBD4	86	40.121	ENSTNIG00000017927	mbd4	68	55.785	Tetraodon_nigroviridis
ENSSHAG00000012953	MBD4	81	62.385	ENSTBEG00000003041	-	80	62.385	Tupaia_belangeri
ENSSHAG00000012953	MBD4	96	57.942	ENSTTRG00000011265	MBD4	98	57.942	Tursiops_truncatus
ENSSHAG00000012953	MBD4	87	58.882	ENSUAMG00000000814	MBD4	100	58.882	Ursus_americanus
ENSSHAG00000012953	MBD4	96	56.673	ENSUMAG00000017542	MBD4	95	56.673	Ursus_maritimus
ENSSHAG00000012953	MBD4	60	60.897	ENSVPAG00000004040	-	61	60.897	Vicugna_pacos
ENSSHAG00000012953	MBD4	99	55.379	ENSVVUG00000014222	MBD4	98	55.379	Vulpes_vulpes
ENSSHAG00000012953	MBD4	51	79.290	ENSXMAG00000021129	mbd4	65	79.290	Xiphophorus_maculatus