EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000013147 (Gene tree)
Gene ID: 100921787
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 52764 bases
Position: chrGL856757.1:1174540-1227303
Accession: 100921787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000015423	EST1	PF10374.9	5.3e-25	1	1
ENSSHAP00000015422	EST1	PF10374.9	5.4e-25	1	1
ENSSHAP00000015423	EST1_DNA_bind	PF10373.9	1.1e-54	1	1
ENSSHAP00000015422	EST1_DNA_bind	PF10373.9	1.1e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000015549	SMG7-201	3728	-	ENSSHAP00000015422	1160 (aa)	XP_012403177	G3WJ17
ENSSHAT00000015550	SMG7-202	3417	-	ENSSHAP00000015423	1138 (aa)	-	G3WJ18

Gene Model

Click here to download ENSSHAG00000013147's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000013147's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000013147	SMG7	100	92.713	ENSG00000116698	SMG7	100	92.976	Homo_sapiens
ENSSHAG00000013147	SMG7	85	74.697	ENSAPOG00000009611	smg7	94	74.697	Acanthochromis_polyacanthus
ENSSHAG00000013147	SMG7	99	91.940	ENSAMEG00000002357	SMG7	99	92.199	Ailuropoda_melanoleuca
ENSSHAG00000013147	SMG7	97	64.349	ENSACIG00000015152	smg7	100	64.742	Amphilophus_citrinellus
ENSSHAG00000013147	SMG7	99	66.781	ENSAOCG00000013538	smg7	100	66.780	Amphiprion_ocellaris
ENSSHAG00000013147	SMG7	99	66.923	ENSAPEG00000007851	smg7	100	66.922	Amphiprion_percula
ENSSHAG00000013147	SMG7	99	65.845	ENSATEG00000006931	smg7	99	66.128	Anabas_testudineus
ENSSHAG00000013147	SMG7	99	89.534	ENSAPLG00000015811	SMG7	99	89.780	Anas_platyrhynchos
ENSSHAG00000013147	SMG7	99	83.459	ENSACAG00000014989	SMG7	99	84.020	Anolis_carolinensis
ENSSHAG00000013147	SMG7	100	92.625	ENSANAG00000028114	SMG7	100	92.888	Aotus_nancymaae
ENSSHAG00000013147	SMG7	99	64.796	ENSACLG00000022079	smg7	100	65.497	Astatotilapia_calliptera
ENSSHAG00000013147	SMG7	99	67.798	ENSAMXG00000020809	smg7	99	67.857	Astyanax_mexicanus
ENSSHAG00000013147	SMG7	100	91.572	ENSBTAG00000008003	SMG7	100	91.835	Bos_taurus
ENSSHAG00000013147	SMG7	100	92.801	ENSCJAG00000005135	SMG7	100	92.801	Callithrix_jacchus
ENSSHAG00000013147	SMG7	99	84.843	ENSCAFG00000013276	SMG7	97	85.013	Canis_familiaris
ENSSHAG00000013147	SMG7	99	92.138	ENSCAFG00020015475	SMG7	99	92.642	Canis_lupus_dingo
ENSSHAG00000013147	SMG7	99	84.264	ENSCHIG00000018192	SMG7	99	84.720	Capra_hircus
ENSSHAG00000013147	SMG7	100	92.625	ENSTSYG00000002667	SMG7	100	92.625	Carlito_syrichta
ENSSHAG00000013147	SMG7	99	84.928	ENSCPOG00000008906	SMG7	99	84.237	Cavia_porcellus
ENSSHAG00000013147	SMG7	100	92.888	ENSCCAG00000028596	SMG7	100	93.152	Cebus_capucinus
ENSSHAG00000013147	SMG7	100	92.888	ENSCATG00000011063	SMG7	100	93.152	Cercocebus_atys
ENSSHAG00000013147	SMG7	100	91.747	ENSCLAG00000010751	SMG7	100	91.747	Chinchilla_lanigera
ENSSHAG00000013147	SMG7	99	85.521	ENSCSAG00000012654	SMG7	97	85.775	Chlorocebus_sabaeus
ENSSHAG00000013147	SMG7	92	81.461	ENSCHOG00000010522	SMG7	93	82.084	Choloepus_hoffmanni
ENSSHAG00000013147	SMG7	99	91.718	ENSCPBG00000015724	SMG7	99	91.792	Chrysemys_picta_bellii
ENSSHAG00000013147	SMG7	99	93.268	ENSCANG00000015680	SMG7	99	93.617	Colobus_angolensis_palliatus
ENSSHAG00000013147	SMG7	100	91.220	ENSCGRG00001013705	Smg7	100	91.220	Cricetulus_griseus_chok1gshd
ENSSHAG00000013147	SMG7	99	91.674	ENSCGRG00000018401	Smg7	100	91.755	Cricetulus_griseus_crigri
ENSSHAG00000013147	SMG7	98	64.832	ENSCVAG00000011842	smg7	100	64.746	Cyprinodon_variegatus
ENSSHAG00000013147	SMG7	99	66.955	ENSDARG00000060767	smg7	100	66.667	Danio_rerio
ENSSHAG00000013147	SMG7	100	84.441	ENSDORG00000007331	Smg7	100	84.693	Dipodomys_ordii
ENSSHAG00000013147	SMG7	97	84.115	ENSETEG00000002654	SMG7	100	84.115	Echinops_telfairi
ENSSHAG00000013147	SMG7	100	85.366	ENSEASG00005006524	SMG7	100	85.618	Equus_asinus_asinus
ENSSHAG00000013147	SMG7	96	98.187	ENSECAG00000004313	SMG7	97	98.187	Equus_caballus
ENSSHAG00000013147	SMG7	97	83.521	ENSEEUG00000002024	SMG7	94	83.781	Erinaceus_europaeus
ENSSHAG00000013147	SMG7	99	63.517	ENSELUG00000010293	smg7	99	65.691	Esox_lucius
ENSSHAG00000013147	SMG7	99	88.948	ENSFCAG00000010900	SMG7	99	88.590	Felis_catus
ENSSHAG00000013147	SMG7	98	81.903	ENSFALG00000003047	SMG7	100	81.973	Ficedula_albicollis
ENSSHAG00000013147	SMG7	99	85.267	ENSFDAG00000012121	SMG7	99	85.545	Fukomys_damarensis
ENSSHAG00000013147	SMG7	99	64.494	ENSFHEG00000011073	smg7	99	64.585	Fundulus_heteroclitus
ENSSHAG00000013147	SMG7	72	74.525	ENSGMOG00000004916	smg7	76	74.525	Gadus_morhua
ENSSHAG00000013147	SMG7	99	88.840	ENSGALG00000004667	SMG7	99	88.908	Gallus_gallus
ENSSHAG00000013147	SMG7	99	64.433	ENSGAFG00000019000	smg7	99	63.941	Gambusia_affinis
ENSSHAG00000013147	SMG7	97	62.676	ENSGACG00000001634	smg7	99	63.820	Gasterosteus_aculeatus
ENSSHAG00000013147	SMG7	100	92.625	ENSGGOG00000002342	SMG7	100	92.888	Gorilla_gorilla
ENSSHAG00000013147	SMG7	99	63.605	ENSHBUG00000003726	smg7	99	64.763	Haplochromis_burtoni
ENSSHAG00000013147	SMG7	100	92.362	ENSHGLG00000009353	SMG7	100	92.625	Heterocephalus_glaber_female
ENSSHAG00000013147	SMG7	100	92.274	ENSHGLG00100009637	-	100	92.537	Heterocephalus_glaber_male
ENSSHAG00000013147	SMG7	100	78.049	ENSHGLG00100004878	-	100	78.301	Heterocephalus_glaber_male
ENSSHAG00000013147	SMG7	99	68.035	ENSIPUG00000016997	smg7	100	68.000	Ictalurus_punctatus
ENSSHAG00000013147	SMG7	100	89.464	ENSSTOG00000000401	SMG7	100	89.552	Ictidomys_tridecemlineatus
ENSSHAG00000013147	SMG7	100	84.188	ENSJJAG00000012351	Smg7	100	84.188	Jaculus_jaculus
ENSSHAG00000013147	SMG7	97	62.368	ENSKMAG00000004900	smg7	100	62.555	Kryptolebias_marmoratus
ENSSHAG00000013147	SMG7	52	62.500	ENSLBEG00000005220	-	75	62.500	Labrus_bergylta
ENSSHAG00000013147	SMG7	99	66.149	ENSLBEG00000002983	smg7	99	66.465	Labrus_bergylta
ENSSHAG00000013147	SMG7	99	74.523	ENSLACG00000000972	SMG7	99	74.675	Latimeria_chalumnae
ENSSHAG00000013147	SMG7	100	67.026	ENSLOCG00000002010	smg7	99	67.559	Lepisosteus_oculatus
ENSSHAG00000013147	SMG7	99	85.411	ENSLAFG00000008186	SMG7	99	85.739	Loxodonta_africana
ENSSHAG00000013147	SMG7	99	89.390	ENSMFAG00000031653	SMG7	100	89.354	Macaca_fascicularis
ENSSHAG00000013147	SMG7	99	92.806	ENSMMUG00000018458	SMG7	99	93.156	Macaca_mulatta
ENSSHAG00000013147	SMG7	100	92.888	ENSMNEG00000034798	SMG7	100	93.152	Macaca_nemestrina
ENSSHAG00000013147	SMG7	100	92.888	ENSMLEG00000037170	SMG7	100	93.152	Mandrillus_leucophaeus
ENSSHAG00000013147	SMG7	87	65.340	ENSMAMG00000018733	smg7	85	65.209	Mastacembelus_armatus
ENSSHAG00000013147	SMG7	99	65.184	ENSMZEG00005015247	smg7	100	65.411	Maylandia_zebra
ENSSHAG00000013147	SMG7	97	88.769	ENSMGAG00000001561	SMG7	98	88.849	Meleagris_gallopavo
ENSSHAG00000013147	SMG7	100	91.308	ENSMAUG00000019484	Smg7	100	91.572	Mesocricetus_auratus
ENSSHAG00000013147	SMG7	100	92.976	ENSMICG00000007145	SMG7	100	92.625	Microcebus_murinus
ENSSHAG00000013147	SMG7	100	91.045	ENSMOCG00000020748	Smg7	100	91.308	Microtus_ochrogaster
ENSSHAG00000013147	SMG7	99	65.368	ENSMMOG00000001524	smg7	99	65.856	Mola_mola
ENSSHAG00000013147	SMG7	92	97.701	ENSMODG00000007139	SMG7	99	97.818	Monodelphis_domestica
ENSSHAG00000013147	SMG7	99	65.810	ENSMALG00000000061	smg7	93	66.351	Monopterus_albus
ENSSHAG00000013147	SMG7	100	90.957	MGP_CAROLIEiJ_G0014704	Smg7	100	90.957	Mus_caroli
ENSSHAG00000013147	SMG7	100	90.957	ENSMUSG00000042772	Smg7	100	91.220	Mus_musculus
ENSSHAG00000013147	SMG7	100	90.869	MGP_PahariEiJ_G0027940	Smg7	100	91.133	Mus_pahari
ENSSHAG00000013147	SMG7	100	91.045	MGP_SPRETEiJ_G0015511	Smg7	100	91.308	Mus_spretus
ENSSHAG00000013147	SMG7	98	84.786	ENSMPUG00000011732	SMG7	97	85.030	Mustela_putorius_furo
ENSSHAG00000013147	SMG7	100	84.945	ENSMLUG00000015417	SMG7	100	85.198	Myotis_lucifugus
ENSSHAG00000013147	SMG7	99	92.668	ENSNGAG00000009836	Smg7	100	91.747	Nannospalax_galili
ENSSHAG00000013147	SMG7	98	61.043	ENSNBRG00000024343	smg7	99	61.855	Neolamprologus_brichardi
ENSSHAG00000013147	SMG7	100	92.976	ENSNLEG00000018018	SMG7	100	93.240	Nomascus_leucogenys
ENSSHAG00000013147	SMG7	69	99.593	ENSMEUG00000004681	SMG7	73	99.593	Notamacropus_eugenii
ENSSHAG00000013147	SMG7	96	75.832	ENSOPRG00000013942	SMG7	96	75.723	Ochotona_princeps
ENSSHAG00000013147	SMG7	100	92.186	ENSODEG00000010390	SMG7	100	92.186	Octodon_degus
ENSSHAG00000013147	SMG7	99	64.492	ENSONIG00000000277	smg7	99	65.579	Oreochromis_niloticus
ENSSHAG00000013147	SMG7	98	83.717	ENSOANG00000000994	SMG7	100	83.788	Ornithorhynchus_anatinus
ENSSHAG00000013147	SMG7	99	79.763	ENSOCUG00000005887	SMG7	92	80.136	Oryctolagus_cuniculus
ENSSHAG00000013147	SMG7	99	63.778	ENSORLG00000007314	smg7	75	88.272	Oryzias_latipes
ENSSHAG00000013147	SMG7	99	64.125	ENSORLG00020015779	smg7	99	64.180	Oryzias_latipes_hni
ENSSHAG00000013147	SMG7	99	63.817	ENSORLG00015012289	smg7	99	63.872	Oryzias_latipes_hsok
ENSSHAG00000013147	SMG7	99	61.767	ENSOMEG00000002328	smg7	99	62.160	Oryzias_melastigma
ENSSHAG00000013147	SMG7	96	84.192	ENSOGAG00000003107	SMG7	93	84.105	Otolemur_garnettii
ENSSHAG00000013147	SMG7	98	88.046	ENSOARG00000001352	SMG7	100	88.304	Ovis_aries
ENSSHAG00000013147	SMG7	100	92.888	ENSPPAG00000031619	SMG7	100	93.152	Pan_paniscus
ENSSHAG00000013147	SMG7	100	92.450	ENSPPRG00000011222	SMG7	100	92.362	Panthera_pardus
ENSSHAG00000013147	SMG7	96	88.666	ENSPTIG00000007242	SMG7	100	88.656	Panthera_tigris_altaica
ENSSHAG00000013147	SMG7	100	92.888	ENSPTRG00000001764	SMG7	100	93.152	Pan_troglodytes
ENSSHAG00000013147	SMG7	100	92.888	ENSPANG00000004520	SMG7	100	93.152	Papio_anubis
ENSSHAG00000013147	SMG7	99	64.223	ENSPKIG00000007242	smg7	99	65.233	Paramormyrops_kingsleyae
ENSSHAG00000013147	SMG7	98	90.544	ENSPSIG00000012201	SMG7	100	90.536	Pelodiscus_sinensis
ENSSHAG00000013147	SMG7	71	42.503	ENSPMGG00000021833	smg7	98	43.026	Periophthalmus_magnuspinnatus
ENSSHAG00000013147	SMG7	99	89.017	ENSPEMG00000011315	Smg7	99	89.362	Peromyscus_maniculatus_bairdii
ENSSHAG00000013147	SMG7	100	97.627	ENSPCIG00000003786	SMG7	100	97.627	Phascolarctos_cinereus
ENSSHAG00000013147	SMG7	99	61.818	ENSPFOG00000019219	smg7	99	61.838	Poecilia_formosa
ENSSHAG00000013147	SMG7	99	64.549	ENSPLAG00000001446	smg7	99	64.488	Poecilia_latipinna
ENSSHAG00000013147	SMG7	96	63.918	ENSPMEG00000005218	smg7	99	63.854	Poecilia_mexicana
ENSSHAG00000013147	SMG7	87	61.637	ENSPREG00000019039	smg7	91	61.933	Poecilia_reticulata
ENSSHAG00000013147	SMG7	100	92.976	ENSPPYG00000000427	SMG7	100	93.240	Pongo_abelii
ENSSHAG00000013147	SMG7	95	75.265	ENSPCAG00000008360	SMG7	94	75.332	Procavia_capensis
ENSSHAG00000013147	SMG7	100	89.289	ENSPCOG00000011996	SMG7	100	88.938	Propithecus_coquereli
ENSSHAG00000013147	SMG7	91	78.453	ENSPVAG00000000851	SMG7	89	80.000	Pteropus_vampyrus
ENSSHAG00000013147	SMG7	99	64.821	ENSPNYG00000007643	smg7	100	65.523	Pundamilia_nyererei
ENSSHAG00000013147	SMG7	99	67.650	ENSPNAG00000011374	smg7	100	67.271	Pygocentrus_nattereri
ENSSHAG00000013147	SMG7	100	91.228	ENSRNOG00000027962	Smg7	100	91.228	Rattus_norvegicus
ENSSHAG00000013147	SMG7	100	92.801	ENSRBIG00000036316	SMG7	100	93.064	Rhinopithecus_bieti
ENSSHAG00000013147	SMG7	100	92.801	ENSRROG00000035719	SMG7	100	93.064	Rhinopithecus_roxellana
ENSSHAG00000013147	SMG7	100	88.938	ENSSBOG00000023454	SMG7	100	89.201	Saimiri_boliviensis_boliviensis
ENSSHAG00000013147	SMG7	99	68.472	ENSSFOG00015017252	smg7	100	68.288	Scleropages_formosus
ENSSHAG00000013147	SMG7	99	64.767	ENSSMAG00000006067	smg7	100	65.262	Scophthalmus_maximus
ENSSHAG00000013147	SMG7	63	73.444	ENSSDUG00000017543	smg7	99	66.007	Seriola_dumerili
ENSSHAG00000013147	SMG7	99	89.664	ENSSPUG00000002064	SMG7	99	89.744	Sphenodon_punctatus
ENSSHAG00000013147	SMG7	98	67.077	ENSSPAG00000008733	smg7	98	66.872	Stegastes_partitus
ENSSHAG00000013147	SMG7	100	88.762	ENSSSCG00000015558	SMG7	100	89.025	Sus_scrofa
ENSSHAG00000013147	SMG7	99	89.075	ENSTGUG00000003928	SMG7	99	89.153	Taeniopygia_guttata
ENSSHAG00000013147	SMG7	99	59.317	ENSTNIG00000002802	smg7	100	58.809	Tetraodon_nigroviridis
ENSSHAG00000013147	SMG7	78	84.211	ENSTBEG00000003220	SMG7	73	84.615	Tupaia_belangeri
ENSSHAG00000013147	SMG7	96	85.026	ENSTTRG00000014778	SMG7	93	85.364	Tursiops_truncatus
ENSSHAG00000013147	SMG7	96	88.332	ENSUAMG00000017473	SMG7	100	88.595	Ursus_americanus
ENSSHAG00000013147	SMG7	96	88.332	ENSUMAG00000016389	SMG7	100	88.595	Ursus_maritimus
ENSSHAG00000013147	SMG7	100	88.235	ENSVVUG00000008976	SMG7	100	88.411	Vulpes_vulpes
ENSSHAG00000013147	SMG7	99	71.192	ENSXETG00000012528	smg7	99	71.404	Xenopus_tropicalis
ENSSHAG00000013147	SMG7	99	64.488	ENSXMAG00000007123	smg7	99	64.772	Xiphophorus_maculatus