EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000013500 (Gene tree)
Gene ID: 100932248
Gene Symbol: RPUSD1
Alias: C16orf40|MGC19600|RLUCL
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 9531 bases
Position: chrGL841553.1:1247731-1257261
Accession: 100932248
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000015845	PseudoU_synth_2	PF00849.22	7.3e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000015974	RPUSD1-201	1084	-	ENSSHAP00000015845	303 (aa)	XP_003762033	G3WK90

Gene Model

Click here to download ENSSHAG00000013500's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000013500's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000013500	RPUSD1	61	30.392	ENSSHAG00000008304	RPUSD4	64	30.392

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000013500	RPUSD1	100	66.667	ENSG00000007376	RPUSD1	100	77.381	Homo_sapiens
ENSSHAG00000013500	RPUSD1	98	61.130	ENSAPOG00000022221	rpusd1	98	61.130	Acanthochromis_polyacanthus
ENSSHAG00000013500	RPUSD1	100	71.148	ENSAMEG00000007461	RPUSD1	100	71.148	Ailuropoda_melanoleuca
ENSSHAG00000013500	RPUSD1	98	61.364	ENSACIG00000015863	rpusd1	98	61.688	Amphilophus_citrinellus
ENSSHAG00000013500	RPUSD1	98	60.784	ENSAOCG00000021975	rpusd1	95	60.855	Amphiprion_ocellaris
ENSSHAG00000013500	RPUSD1	98	61.111	ENSAPEG00000001316	rpusd1	95	61.184	Amphiprion_percula
ENSSHAG00000013500	RPUSD1	98	61.889	ENSATEG00000002984	rpusd1	98	62.866	Anabas_testudineus
ENSSHAG00000013500	RPUSD1	78	67.635	ENSAPLG00000012316	RPUSD1	99	67.635	Anas_platyrhynchos
ENSSHAG00000013500	RPUSD1	99	75.667	ENSACAG00000008953	RPUSD1	100	75.667	Anolis_carolinensis
ENSSHAG00000013500	RPUSD1	100	67.949	ENSANAG00000024709	RPUSD1	100	68.371	Aotus_nancymaae
ENSSHAG00000013500	RPUSD1	98	59.554	ENSACLG00000013692	rpusd1	98	61.165	Astatotilapia_calliptera
ENSSHAG00000013500	RPUSD1	99	61.667	ENSAMXG00000019802	rpusd1	100	61.667	Astyanax_mexicanus
ENSSHAG00000013500	RPUSD1	100	69.156	ENSBTAG00000000179	RPUSD1	100	68.690	Bos_taurus
ENSSHAG00000013500	RPUSD1	100	67.308	ENSCJAG00000012253	RPUSD1	100	67.308	Callithrix_jacchus
ENSSHAG00000013500	RPUSD1	100	70.492	ENSCAFG00000019614	RPUSD1	100	70.492	Canis_familiaris
ENSSHAG00000013500	RPUSD1	100	70.492	ENSCAFG00020008891	RPUSD1	100	70.492	Canis_lupus_dingo
ENSSHAG00000013500	RPUSD1	100	69.355	ENSCHIG00000012872	RPUSD1	100	69.010	Capra_hircus
ENSSHAG00000013500	RPUSD1	100	67.320	ENSTSYG00000036934	RPUSD1	92	75.833	Carlito_syrichta
ENSSHAG00000013500	RPUSD1	100	68.690	ENSCAPG00000014219	RPUSD1	100	68.690	Cavia_aperea
ENSSHAG00000013500	RPUSD1	100	68.690	ENSCPOG00000034604	RPUSD1	100	68.690	Cavia_porcellus
ENSSHAG00000013500	RPUSD1	100	68.269	ENSCCAG00000034385	RPUSD1	100	68.269	Cebus_capucinus
ENSSHAG00000013500	RPUSD1	100	67.949	ENSCATG00000042983	RPUSD1	100	68.371	Cercocebus_atys
ENSSHAG00000013500	RPUSD1	100	68.954	ENSCLAG00000013966	RPUSD1	100	68.954	Chinchilla_lanigera
ENSSHAG00000013500	RPUSD1	100	67.628	ENSCSAG00000012121	RPUSD1	100	67.628	Chlorocebus_sabaeus
ENSSHAG00000013500	RPUSD1	99	74.503	ENSCPBG00000021101	RPUSD1	99	74.503	Chrysemys_picta_bellii
ENSSHAG00000013500	RPUSD1	88	73.978	ENSCANG00000028576	RPUSD1	96	73.978	Colobus_angolensis_palliatus
ENSSHAG00000013500	RPUSD1	100	70.323	ENSCGRG00001014253	Rpusd1	100	70.323	Cricetulus_griseus_chok1gshd
ENSSHAG00000013500	RPUSD1	100	70.323	ENSCGRG00000017995	Rpusd1	100	70.323	Cricetulus_griseus_crigri
ENSSHAG00000013500	RPUSD1	99	62.667	ENSCSEG00000018512	rpusd1	100	62.667	Cynoglossus_semilaevis
ENSSHAG00000013500	RPUSD1	98	62.207	ENSCVAG00000022746	rpusd1	98	62.207	Cyprinodon_variegatus
ENSSHAG00000013500	RPUSD1	99	66.883	ENSDARG00000060192	rpusd1	100	66.883	Danio_rerio
ENSSHAG00000013500	RPUSD1	100	66.881	ENSDNOG00000003721	RPUSD1	100	66.987	Dasypus_novemcinctus
ENSSHAG00000013500	RPUSD1	100	69.180	ENSDORG00000026656	Rpusd1	100	68.710	Dipodomys_ordii
ENSSHAG00000013500	RPUSD1	97	47.923	ENSEBUG00000008767	rpusd1	93	47.923	Eptatretus_burgeri
ENSSHAG00000013500	RPUSD1	100	66.772	ENSEASG00005018421	RPUSD1	76	67.722	Equus_asinus_asinus
ENSSHAG00000013500	RPUSD1	98	59.740	ENSELUG00000014307	rpusd1	88	60.065	Esox_lucius
ENSSHAG00000013500	RPUSD1	100	70.492	ENSFCAG00000010359	RPUSD1	100	70.492	Felis_catus
ENSSHAG00000013500	RPUSD1	99	76.333	ENSFALG00000003211	RPUSD1	100	76.333	Ficedula_albicollis
ENSSHAG00000013500	RPUSD1	100	67.732	ENSFDAG00000013398	RPUSD1	100	67.732	Fukomys_damarensis
ENSSHAG00000013500	RPUSD1	98	60.596	ENSFHEG00000004736	rpusd1	98	61.184	Fundulus_heteroclitus
ENSSHAG00000013500	RPUSD1	99	59.091	ENSGMOG00000010756	rpusd1	99	59.740	Gadus_morhua
ENSSHAG00000013500	RPUSD1	99	73.226	ENSGALG00000005315	RPUSD1	100	73.226	Gallus_gallus
ENSSHAG00000013500	RPUSD1	98	62.542	ENSGAFG00000009886	rpusd1	98	62.542	Gambusia_affinis
ENSSHAG00000013500	RPUSD1	97	61.000	ENSGACG00000014276	rpusd1	97	61.056	Gasterosteus_aculeatus
ENSSHAG00000013500	RPUSD1	99	74.172	ENSGAGG00000004181	RPUSD1	99	74.172	Gopherus_agassizii
ENSSHAG00000013500	RPUSD1	100	66.987	ENSGGOG00000013997	RPUSD1	100	66.987	Gorilla_gorilla
ENSSHAG00000013500	RPUSD1	98	59.236	ENSHBUG00000023728	rpusd1	98	60.841	Haplochromis_burtoni
ENSSHAG00000013500	RPUSD1	100	68.627	ENSHGLG00000002595	RPUSD1	100	68.371	Heterocephalus_glaber_female
ENSSHAG00000013500	RPUSD1	100	68.627	ENSHGLG00100014303	RPUSD1	100	68.371	Heterocephalus_glaber_male
ENSSHAG00000013500	RPUSD1	98	63.423	ENSHCOG00000002390	rpusd1	99	63.423	Hippocampus_comes
ENSSHAG00000013500	RPUSD1	99	64.120	ENSIPUG00000001570	rpusd1	99	64.120	Ictalurus_punctatus
ENSSHAG00000013500	RPUSD1	100	70.261	ENSSTOG00000004276	RPUSD1	100	70.261	Ictidomys_tridecemlineatus
ENSSHAG00000013500	RPUSD1	100	68.525	ENSJJAG00000015696	Rpusd1	100	68.489	Jaculus_jaculus
ENSSHAG00000013500	RPUSD1	98	61.462	ENSKMAG00000017287	rpusd1	98	61.462	Kryptolebias_marmoratus
ENSSHAG00000013500	RPUSD1	98	60.714	ENSLBEG00000022502	rpusd1	98	62.215	Labrus_bergylta
ENSSHAG00000013500	RPUSD1	98	60.714	ENSLBEG00000013354	RPUSD1	98	62.215	Labrus_bergylta
ENSSHAG00000013500	RPUSD1	99	69.333	ENSLACG00000008869	RPUSD1	99	69.333	Latimeria_chalumnae
ENSSHAG00000013500	RPUSD1	71	78.505	ENSLOCG00000005682	rpusd1	99	78.505	Lepisosteus_oculatus
ENSSHAG00000013500	RPUSD1	100	68.525	ENSLAFG00000002115	RPUSD1	100	68.525	Loxodonta_africana
ENSSHAG00000013500	RPUSD1	100	67.949	ENSMFAG00000003961	RPUSD1	100	67.949	Macaca_fascicularis
ENSSHAG00000013500	RPUSD1	100	67.949	ENSMMUG00000000842	RPUSD1	100	67.949	Macaca_mulatta
ENSSHAG00000013500	RPUSD1	100	67.949	ENSMNEG00000042712	RPUSD1	100	67.949	Macaca_nemestrina
ENSSHAG00000013500	RPUSD1	100	67.949	ENSMLEG00000030591	RPUSD1	100	67.949	Mandrillus_leucophaeus
ENSSHAG00000013500	RPUSD1	98	62.295	ENSMAMG00000004735	rpusd1	98	62.295	Mastacembelus_armatus
ENSSHAG00000013500	RPUSD1	98	59.554	ENSMZEG00005003214	rpusd1	98	61.165	Maylandia_zebra
ENSSHAG00000013500	RPUSD1	97	73.986	ENSMGAG00000005447	RPUSD1	99	73.986	Meleagris_gallopavo
ENSSHAG00000013500	RPUSD1	86	69.466	ENSMAUG00000019998	Rpusd1	100	69.466	Mesocricetus_auratus
ENSSHAG00000013500	RPUSD1	100	68.404	ENSMICG00000017561	RPUSD1	100	69.156	Microcebus_murinus
ENSSHAG00000013500	RPUSD1	100	70.915	ENSMOCG00000014082	Rpusd1	100	70.288	Microtus_ochrogaster
ENSSHAG00000013500	RPUSD1	98	59.732	ENSMMOG00000012569	rpusd1	99	60.403	Mola_mola
ENSSHAG00000013500	RPUSD1	100	89.251	ENSMODG00000016882	RPUSD1	100	89.577	Monodelphis_domestica
ENSSHAG00000013500	RPUSD1	98	61.489	ENSMALG00000017818	rpusd1	98	61.967	Monopterus_albus
ENSSHAG00000013500	RPUSD1	100	70.915	MGP_CAROLIEiJ_G0021244	Rpusd1	100	69.649	Mus_caroli
ENSSHAG00000013500	RPUSD1	100	71.242	ENSMUSG00000041199	Rpusd1	100	69.968	Mus_musculus
ENSSHAG00000013500	RPUSD1	100	70.455	MGP_PahariEiJ_G0023562	Rpusd1	100	70.779	Mus_pahari
ENSSHAG00000013500	RPUSD1	100	71.242	MGP_SPRETEiJ_G0022155	Rpusd1	100	69.968	Mus_spretus
ENSSHAG00000013500	RPUSD1	100	67.541	ENSMPUG00000015897	RPUSD1	100	68.197	Mustela_putorius_furo
ENSSHAG00000013500	RPUSD1	100	68.489	ENSMLUG00000001089	RPUSD1	100	69.551	Myotis_lucifugus
ENSSHAG00000013500	RPUSD1	100	70.261	ENSNGAG00000003595	Rpusd1	100	69.329	Nannospalax_galili
ENSSHAG00000013500	RPUSD1	98	59.744	ENSNBRG00000006457	rpusd1	98	62.207	Neolamprologus_brichardi
ENSSHAG00000013500	RPUSD1	55	57.143	ENSNLEG00000008424	-	100	58.523	Nomascus_leucogenys
ENSSHAG00000013500	RPUSD1	100	89.439	ENSMEUG00000016049	RPUSD1	100	89.439	Notamacropus_eugenii
ENSSHAG00000013500	RPUSD1	99	64.026	ENSOPRG00000008340	RPUSD1	99	64.026	Ochotona_princeps
ENSSHAG00000013500	RPUSD1	100	68.627	ENSODEG00000016945	RPUSD1	100	68.627	Octodon_degus
ENSSHAG00000013500	RPUSD1	98	59.425	ENSONIG00000015672	rpusd1	99	61.039	Oreochromis_niloticus
ENSSHAG00000013500	RPUSD1	99	63.333	ENSORLG00000013009	rpusd1	99	63.333	Oryzias_latipes
ENSSHAG00000013500	RPUSD1	99	63.000	ENSORLG00020010382	rpusd1	99	63.000	Oryzias_latipes_hni
ENSSHAG00000013500	RPUSD1	99	62.333	ENSORLG00015021354	rpusd1	99	62.333	Oryzias_latipes_hsok
ENSSHAG00000013500	RPUSD1	98	60.841	ENSOMEG00000021426	rpusd1	98	61.616	Oryzias_melastigma
ENSSHAG00000013500	RPUSD1	100	68.269	ENSOGAG00000003795	RPUSD1	100	68.269	Otolemur_garnettii
ENSSHAG00000013500	RPUSD1	100	69.805	ENSOARG00000014254	RPUSD1	100	69.329	Ovis_aries
ENSSHAG00000013500	RPUSD1	100	66.346	ENSPPAG00000034797	RPUSD1	100	66.346	Pan_paniscus
ENSSHAG00000013500	RPUSD1	100	70.492	ENSPPRG00000012389	RPUSD1	100	70.492	Panthera_pardus
ENSSHAG00000013500	RPUSD1	100	70.492	ENSPTIG00000008545	RPUSD1	84	81.081	Panthera_tigris_altaica
ENSSHAG00000013500	RPUSD1	100	66.346	ENSPTRG00000007565	RPUSD1	100	66.346	Pan_troglodytes
ENSSHAG00000013500	RPUSD1	100	67.628	ENSPANG00000024401	RPUSD1	100	67.628	Papio_anubis
ENSSHAG00000013500	RPUSD1	99	66.225	ENSPKIG00000018890	rpusd1	91	66.225	Paramormyrops_kingsleyae
ENSSHAG00000013500	RPUSD1	99	74.257	ENSPSIG00000013945	RPUSD1	100	74.257	Pelodiscus_sinensis
ENSSHAG00000013500	RPUSD1	97	62.373	ENSPMGG00000014950	rpusd1	97	62.373	Periophthalmus_magnuspinnatus
ENSSHAG00000013500	RPUSD1	100	71.242	ENSPEMG00000000497	Rpusd1	100	70.607	Peromyscus_maniculatus_bairdii
ENSSHAG00000013500	RPUSD1	99	51.148	ENSPMAG00000001563	rpusd1	99	51.656	Petromyzon_marinus
ENSSHAG00000013500	RPUSD1	100	94.719	ENSPCIG00000021216	-	94	94.719	Phascolarctos_cinereus
ENSSHAG00000013500	RPUSD1	98	62.752	ENSPFOG00000007946	rpusd1	98	62.752	Poecilia_formosa
ENSSHAG00000013500	RPUSD1	98	62.752	ENSPLAG00000011925	rpusd1	98	62.752	Poecilia_latipinna
ENSSHAG00000013500	RPUSD1	98	62.416	ENSPMEG00000002910	rpusd1	98	62.416	Poecilia_mexicana
ENSSHAG00000013500	RPUSD1	98	62.207	ENSPREG00000019851	rpusd1	98	62.207	Poecilia_reticulata
ENSSHAG00000013500	RPUSD1	100	55.882	ENSPCAG00000002258	RPUSD1	100	55.882	Procavia_capensis
ENSSHAG00000013500	RPUSD1	100	67.628	ENSPCOG00000022582	RPUSD1	100	68.690	Propithecus_coquereli
ENSSHAG00000013500	RPUSD1	100	65.385	ENSPVAG00000013104	RPUSD1	100	65.815	Pteropus_vampyrus
ENSSHAG00000013500	RPUSD1	98	63.300	ENSPNYG00000024076	rpusd1	98	63.300	Pundamilia_nyererei
ENSSHAG00000013500	RPUSD1	99	61.667	ENSPNAG00000013806	rpusd1	100	61.667	Pygocentrus_nattereri
ENSSHAG00000013500	RPUSD1	100	70.588	ENSRNOG00000023639	Rpusd1	100	69.329	Rattus_norvegicus
ENSSHAG00000013500	RPUSD1	100	68.269	ENSRBIG00000030238	RPUSD1	100	68.269	Rhinopithecus_bieti
ENSSHAG00000013500	RPUSD1	100	68.269	ENSRROG00000036663	RPUSD1	100	68.269	Rhinopithecus_roxellana
ENSSHAG00000013500	RPUSD1	100	68.852	ENSSBOG00000033063	RPUSD1	100	69.508	Saimiri_boliviensis_boliviensis
ENSSHAG00000013500	RPUSD1	99	67.559	ENSSFOG00015014394	rpusd1	99	67.559	Scleropages_formosus
ENSSHAG00000013500	RPUSD1	98	60.855	ENSSMAG00000008045	rpusd1	91	60.855	Scophthalmus_maximus
ENSSHAG00000013500	RPUSD1	83	70.120	ENSSDUG00000001829	rpusd1	95	62.171	Seriola_dumerili
ENSSHAG00000013500	RPUSD1	83	70.120	ENSSLDG00000020853	rpusd1	95	62.171	Seriola_lalandi_dorsalis
ENSSHAG00000013500	RPUSD1	54	77.844	ENSSARG00000011187	-	100	77.844	Sorex_araneus
ENSSHAG00000013500	RPUSD1	62	64.737	ENSSPUG00000005119	-	100	64.737	Sphenodon_punctatus
ENSSHAG00000013500	RPUSD1	98	61.184	ENSSPAG00000012708	rpusd1	98	61.842	Stegastes_partitus
ENSSHAG00000013500	RPUSD1	100	66.987	ENSSSCG00000008000	RPUSD1	98	75.197	Sus_scrofa
ENSSHAG00000013500	RPUSD1	83	83.004	ENSTGUG00000015375	RPUSD1	100	83.004	Taeniopygia_guttata
ENSSHAG00000013500	RPUSD1	98	59.283	ENSTRUG00000003041	rpusd1	98	59.609	Takifugu_rubripes
ENSSHAG00000013500	RPUSD1	98	57.912	ENSTNIG00000002660	rpusd1	99	57.912	Tetraodon_nigroviridis
ENSSHAG00000013500	RPUSD1	100	68.269	ENSTTRG00000010167	RPUSD1	100	68.690	Tursiops_truncatus
ENSSHAG00000013500	RPUSD1	100	70.164	ENSUAMG00000012736	RPUSD1	100	70.164	Ursus_americanus
ENSSHAG00000013500	RPUSD1	100	70.492	ENSUMAG00000021174	RPUSD1	100	70.492	Ursus_maritimus
ENSSHAG00000013500	RPUSD1	100	70.164	ENSVVUG00000012357	RPUSD1	100	70.164	Vulpes_vulpes
ENSSHAG00000013500	RPUSD1	100	70.358	ENSXETG00000007184	rpusd1	100	70.358	Xenopus_tropicalis
ENSSHAG00000013500	RPUSD1	98	62.207	ENSXCOG00000017930	rpusd1	98	62.207	Xiphophorus_couchianus
ENSSHAG00000013500	RPUSD1	98	62.207	ENSXMAG00000024084	rpusd1	98	62.207	Xiphophorus_maculatus