EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000013518 (Gene tree)
Gene ID: 100917116
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 104597 bases
Position: chrGL867593.1:1251439-1356035
Accession: 100917116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000015866	ResIII	PF04851.15	1.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000015995	SMARCA1-201	3472	XM_012553238	ENSSHAP00000015866	979 (aa)	XP_012408692	G3WKB1

Gene Model

Click here to download ENSSHAG00000013518's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000013518's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000013518	SMARCA1	52	47.410	ENSSHAG00000014358	HELLS	65	47.410
ENSSHAG00000013518	SMARCA1	58	43.082	ENSSHAG00000017395	CHD1L	61	42.907
ENSSHAG00000013518	SMARCA1	99	81.977	ENSSHAG00000008464	SMARCA5	98	81.977

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000013518	SMARCA1	99	86.742	ENSG00000102038	SMARCA1	92	86.742	Homo_sapiens
ENSSHAG00000013518	SMARCA1	99	79.733	ENSAPOG00000016035	smarca5	98	80.635	Acanthochromis_polyacanthus
ENSSHAG00000013518	SMARCA1	99	85.279	ENSAMEG00000015218	SMARCA1	92	85.279	Ailuropoda_melanoleuca
ENSSHAG00000013518	SMARCA1	92	81.174	ENSACIG00000016982	smarca5	100	81.174	Amphilophus_citrinellus
ENSSHAG00000013518	SMARCA1	99	79.733	ENSAOCG00000015578	smarca5	94	79.733	Amphiprion_ocellaris
ENSSHAG00000013518	SMARCA1	99	79.733	ENSAPEG00000011117	smarca5	99	81.132	Amphiprion_percula
ENSSHAG00000013518	SMARCA1	99	79.630	ENSATEG00000012894	smarca5	93	80.822	Anabas_testudineus
ENSSHAG00000013518	SMARCA1	99	88.284	ENSAPLG00000013149	SMARCA1	99	88.284	Anas_platyrhynchos
ENSSHAG00000013518	SMARCA1	99	88.386	ENSACAG00000011376	SMARCA1	93	88.386	Anolis_carolinensis
ENSSHAG00000013518	SMARCA1	99	81.501	ENSANAG00000023098	SMARCA1	92	81.706	Aotus_nancymaae
ENSSHAG00000013518	SMARCA1	99	80.041	ENSACLG00000025356	smarca5	94	80.041	Astatotilapia_calliptera
ENSSHAG00000013518	SMARCA1	99	80.761	ENSAMXG00000005709	smarca5	94	80.639	Astyanax_mexicanus
ENSSHAG00000013518	SMARCA1	95	85.269	ENSAMXG00000011227	smarca1	99	85.269	Astyanax_mexicanus
ENSSHAG00000013518	SMARCA1	99	86.200	ENSBTAG00000002292	SMARCA1	92	85.462	Bos_taurus
ENSSHAG00000013518	SMARCA1	99	61.224	WBGene00002169	isw-1	96	60.674	Caenorhabditis_elegans
ENSSHAG00000013518	SMARCA1	99	86.742	ENSCJAG00000002868	SMARCA1	92	86.742	Callithrix_jacchus
ENSSHAG00000013518	SMARCA1	99	76.791	ENSCAFG00000018673	SMARCA1	99	78.026	Canis_familiaris
ENSSHAG00000013518	SMARCA1	99	86.639	ENSCAFG00020001751	SMARCA1	92	86.639	Canis_lupus_dingo
ENSSHAG00000013518	SMARCA1	99	86.434	ENSCHIG00000009837	SMARCA1	92	86.434	Capra_hircus
ENSSHAG00000013518	SMARCA1	99	86.331	ENSTSYG00000004240	SMARCA1	95	86.421	Carlito_syrichta
ENSSHAG00000013518	SMARCA1	99	86.008	ENSCPOG00000013601	SMARCA1	92	86.008	Cavia_porcellus
ENSSHAG00000013518	SMARCA1	99	83.967	ENSCCAG00000030817	SMARCA1	92	83.967	Cebus_capucinus
ENSSHAG00000013518	SMARCA1	99	85.685	ENSCATG00000015921	SMARCA1	91	86.870	Cercocebus_atys
ENSSHAG00000013518	SMARCA1	99	86.331	ENSCLAG00000002171	SMARCA1	92	86.331	Chinchilla_lanigera
ENSSHAG00000013518	SMARCA1	99	86.742	ENSCSAG00000008460	SMARCA1	92	86.742	Chlorocebus_sabaeus
ENSSHAG00000013518	SMARCA1	99	89.311	ENSCPBG00000001146	SMARCA1	92	89.311	Chrysemys_picta_bellii
ENSSHAG00000013518	SMARCA1	99	70.606	ENSCING00000004110	swi/snf	96	70.504	Ciona_intestinalis
ENSSHAG00000013518	SMARCA1	99	70.389	ENSCSAVG00000004620	-	99	71.700	Ciona_savignyi
ENSSHAG00000013518	SMARCA1	99	86.639	ENSCANG00000007183	SMARCA1	92	86.639	Colobus_angolensis_palliatus
ENSSHAG00000013518	SMARCA1	99	86.125	ENSCGRG00001010776	Smarca1	92	86.125	Cricetulus_griseus_chok1gshd
ENSSHAG00000013518	SMARCA1	97	85.924	ENSCGRG00000015301	Smarca1	95	85.924	Cricetulus_griseus_crigri
ENSSHAG00000013518	SMARCA1	99	79.424	ENSCSEG00000000328	smarca5	94	79.424	Cynoglossus_semilaevis
ENSSHAG00000013518	SMARCA1	99	79.424	ENSCVAG00000008668	smarca5	99	80.919	Cyprinodon_variegatus
ENSSHAG00000013518	SMARCA1	99	82.609	ENSDARG00000012776	smarca1	95	82.609	Danio_rerio
ENSSHAG00000013518	SMARCA1	99	80.144	ENSDARG00000052348	smarca5	94	80.021	Danio_rerio
ENSSHAG00000013518	SMARCA1	97	86.211	ENSDNOG00000004315	SMARCA1	90	86.681	Dasypus_novemcinctus
ENSSHAG00000013518	SMARCA1	97	85.924	ENSDORG00000009270	Smarca1	91	85.924	Dipodomys_ordii
ENSSHAG00000013518	SMARCA1	95	72.708	FBgn0011604	Iswi	96	70.612	Drosophila_melanogaster
ENSSHAG00000013518	SMARCA1	83	80.488	ENSETEG00000017426	SMARCA1	85	80.488	Echinops_telfairi
ENSSHAG00000013518	SMARCA1	99	78.212	ENSEBUG00000001239	smarca5	96	78.212	Eptatretus_burgeri
ENSSHAG00000013518	SMARCA1	99	82.497	ENSEASG00005008218	SMARCA1	99	82.942	Equus_asinus_asinus
ENSSHAG00000013518	SMARCA1	99	86.536	ENSECAG00000012106	SMARCA1	92	86.536	Equus_caballus
ENSSHAG00000013518	SMARCA1	82	81.126	ENSEEUG00000014927	SMARCA1	83	81.126	Erinaceus_europaeus
ENSSHAG00000013518	SMARCA1	99	84.552	ENSELUG00000010515	smarca1	95	84.716	Esox_lucius
ENSSHAG00000013518	SMARCA1	99	86.434	ENSFCAG00000018496	SMARCA1	92	86.434	Felis_catus
ENSSHAG00000013518	SMARCA1	93	88.512	ENSFALG00000000209	SMARCA1	98	88.512	Ficedula_albicollis
ENSSHAG00000013518	SMARCA1	97	85.166	ENSFDAG00000009818	SMARCA1	95	85.166	Fukomys_damarensis
ENSSHAG00000013518	SMARCA1	99	79.527	ENSFHEG00000007687	smarca5	91	81.776	Fundulus_heteroclitus
ENSSHAG00000013518	SMARCA1	97	88.936	ENSGALG00000008431	SMARCA1	94	88.936	Gallus_gallus
ENSSHAG00000013518	SMARCA1	99	79.733	ENSGAFG00000017731	smarca5	94	79.733	Gambusia_affinis
ENSSHAG00000013518	SMARCA1	99	89.311	ENSGAGG00000023575	SMARCA1	100	89.311	Gopherus_agassizii
ENSSHAG00000013518	SMARCA1	76	81.912	ENSGGOG00000012841	-	91	81.899	Gorilla_gorilla
ENSSHAG00000013518	SMARCA1	99	85.817	ENSHGLG00000003080	SMARCA1	92	85.817	Heterocephalus_glaber_female
ENSSHAG00000013518	SMARCA1	99	85.802	ENSHGLG00100001102	SMARCA1	97	85.802	Heterocephalus_glaber_male
ENSSHAG00000013518	SMARCA1	99	79.938	ENSHCOG00000005458	smarca5	94	79.938	Hippocampus_comes
ENSSHAG00000013518	SMARCA1	99	80.433	ENSIPUG00000005229	SMARCA5	96	80.433	Ictalurus_punctatus
ENSSHAG00000013518	SMARCA1	99	83.591	ENSIPUG00000016905	Smarca1	98	83.574	Ictalurus_punctatus
ENSSHAG00000013518	SMARCA1	99	86.331	ENSSTOG00000014524	SMARCA1	94	86.317	Ictidomys_tridecemlineatus
ENSSHAG00000013518	SMARCA1	99	86.125	ENSJJAG00000002593	Smarca1	92	86.125	Jaculus_jaculus
ENSSHAG00000013518	SMARCA1	99	79.321	ENSKMAG00000003777	smarca5	94	79.321	Kryptolebias_marmoratus
ENSSHAG00000013518	SMARCA1	99	80.144	ENSLBEG00000018112	smarca5	94	80.144	Labrus_bergylta
ENSSHAG00000013518	SMARCA1	93	81.400	ENSLBEG00000013295	SMARCA1	100	82.576	Labrus_bergylta
ENSSHAG00000013518	SMARCA1	99	86.845	ENSLACG00000016697	SMARCA1	96	86.845	Latimeria_chalumnae
ENSSHAG00000013518	SMARCA1	99	85.802	ENSLOCG00000014591	smarca1	95	85.802	Lepisosteus_oculatus
ENSSHAG00000013518	SMARCA1	99	86.317	ENSLAFG00000000896	SMARCA1	97	86.317	Loxodonta_africana
ENSSHAG00000013518	SMARCA1	99	86.742	ENSMFAG00000002117	SMARCA1	94	86.856	Macaca_fascicularis
ENSSHAG00000013518	SMARCA1	99	85.685	ENSMMUG00000008818	SMARCA1	96	87.406	Macaca_mulatta
ENSSHAG00000013518	SMARCA1	99	85.685	ENSMNEG00000041768	SMARCA1	94	86.856	Macaca_nemestrina
ENSSHAG00000013518	SMARCA1	99	86.742	ENSMLEG00000043198	SMARCA1	92	86.742	Mandrillus_leucophaeus
ENSSHAG00000013518	SMARCA1	99	79.527	ENSMAMG00000014294	smarca5	93	79.527	Mastacembelus_armatus
ENSSHAG00000013518	SMARCA1	99	80.041	ENSMZEG00005009369	smarca5	94	80.041	Maylandia_zebra
ENSSHAG00000013518	SMARCA1	99	87.411	ENSMGAG00000007042	SMARCA1	97	87.411	Meleagris_gallopavo
ENSSHAG00000013518	SMARCA1	97	85.609	ENSMAUG00000008133	Smarca1	91	85.609	Mesocricetus_auratus
ENSSHAG00000013518	SMARCA1	99	86.639	ENSMICG00000015768	SMARCA1	92	86.639	Microcebus_murinus
ENSSHAG00000013518	SMARCA1	99	86.023	ENSMOCG00000009464	Smarca1	91	86.023	Microtus_ochrogaster
ENSSHAG00000013518	SMARCA1	99	78.417	ENSMMOG00000005547	smarca5	98	78.292	Mola_mola
ENSSHAG00000013518	SMARCA1	99	89.620	ENSMODG00000013187	-	94	89.620	Monodelphis_domestica
ENSSHAG00000013518	SMARCA1	99	79.218	ENSMALG00000002081	smarca5	95	79.393	Monopterus_albus
ENSSHAG00000013518	SMARCA1	99	85.509	MGP_CAROLIEiJ_G0033034	Smarca1	92	85.509	Mus_caroli
ENSSHAG00000013518	SMARCA1	99	85.509	ENSMUSG00000031099	Smarca1	92	85.509	Mus_musculus
ENSSHAG00000013518	SMARCA1	99	85.303	MGP_PahariEiJ_G0031579	Smarca1	92	85.303	Mus_pahari
ENSSHAG00000013518	SMARCA1	99	85.509	MGP_SPRETEiJ_G0034192	Smarca1	92	85.509	Mus_spretus
ENSSHAG00000013518	SMARCA1	99	85.482	ENSMPUG00000017423	SMARCA1	87	85.482	Mustela_putorius_furo
ENSSHAG00000013518	SMARCA1	99	84.498	ENSMLUG00000029614	SMARCA1	92	84.498	Myotis_lucifugus
ENSSHAG00000013518	SMARCA1	97	86.555	ENSNGAG00000006492	Smarca1	91	86.555	Nannospalax_galili
ENSSHAG00000013518	SMARCA1	99	79.938	ENSNBRG00000004463	smarca5	97	79.938	Neolamprologus_brichardi
ENSSHAG00000013518	SMARCA1	99	84.873	ENSNLEG00000015179	SMARCA1	95	85.924	Nomascus_leucogenys
ENSSHAG00000013518	SMARCA1	93	79.784	ENSMEUG00000008819	SMARCA1	97	79.784	Notamacropus_eugenii
ENSSHAG00000013518	SMARCA1	97	85.373	ENSODEG00000012163	SMARCA1	91	85.373	Octodon_degus
ENSSHAG00000013518	SMARCA1	99	79.938	ENSONIG00000009993	smarca5	94	79.938	Oreochromis_niloticus
ENSSHAG00000013518	SMARCA1	99	89.620	ENSOANG00000002862	SMARCA1	100	89.620	Ornithorhynchus_anatinus
ENSSHAG00000013518	SMARCA1	99	86.228	ENSOCUG00000001047	SMARCA1	92	86.228	Oryctolagus_cuniculus
ENSSHAG00000013518	SMARCA1	99	80.350	ENSORLG00000021998	smarca5	93	80.350	Oryzias_latipes
ENSSHAG00000013518	SMARCA1	99	80.247	ENSORLG00020017679	smarca5	93	80.247	Oryzias_latipes_hni
ENSSHAG00000013518	SMARCA1	99	80.473	ENSORLG00015017210	smarca5	94	80.350	Oryzias_latipes_hsok
ENSSHAG00000013518	SMARCA1	99	80.350	ENSOMEG00000000086	smarca5	94	80.350	Oryzias_melastigma
ENSSHAG00000013518	SMARCA1	97	85.788	ENSOGAG00000004399	SMARCA1	89	86.426	Otolemur_garnettii
ENSSHAG00000013518	SMARCA1	99	86.434	ENSOARG00000014638	SMARCA1	99	86.434	Ovis_aries
ENSSHAG00000013518	SMARCA1	99	86.742	ENSPPAG00000034647	SMARCA1	92	86.742	Pan_paniscus
ENSSHAG00000013518	SMARCA1	99	86.536	ENSPPRG00000008929	SMARCA1	92	86.536	Panthera_pardus
ENSSHAG00000013518	SMARCA1	99	84.545	ENSPTIG00000000915	SMARCA1	95	84.545	Panthera_tigris_altaica
ENSSHAG00000013518	SMARCA1	99	86.742	ENSPTRG00000049876	SMARCA1	91	86.870	Pan_troglodytes
ENSSHAG00000013518	SMARCA1	99	86.742	ENSPANG00000003871	SMARCA1	92	86.742	Papio_anubis
ENSSHAG00000013518	SMARCA1	95	84.979	ENSPKIG00000013411	smarca1	94	84.979	Paramormyrops_kingsleyae
ENSSHAG00000013518	SMARCA1	99	89.003	ENSPSIG00000010101	SMARCA1	100	89.003	Pelodiscus_sinensis
ENSSHAG00000013518	SMARCA1	97	86.029	ENSPEMG00000017503	Smarca1	91	86.029	Peromyscus_maniculatus_bairdii
ENSSHAG00000013518	SMARCA1	99	90.236	ENSPCIG00000015460	SMARCA1	95	90.236	Phascolarctos_cinereus
ENSSHAG00000013518	SMARCA1	99	79.630	ENSPFOG00000007649	smarca5	94	79.630	Poecilia_formosa
ENSSHAG00000013518	SMARCA1	99	79.630	ENSPLAG00000003363	smarca5	94	79.630	Poecilia_latipinna
ENSSHAG00000013518	SMARCA1	99	79.733	ENSPMEG00000019849	smarca5	94	79.733	Poecilia_mexicana
ENSSHAG00000013518	SMARCA1	99	79.733	ENSPREG00000023250	smarca5	94	79.733	Poecilia_reticulata
ENSSHAG00000013518	SMARCA1	99	83.864	ENSPPYG00000020703	SMARCA1	92	83.864	Pongo_abelii
ENSSHAG00000013518	SMARCA1	80	78.400	ENSPCOG00000020722	SMARCA1	93	82.467	Propithecus_coquereli
ENSSHAG00000013518	SMARCA1	97	79.876	ENSPVAG00000003805	SMARCA1	90	80.382	Pteropus_vampyrus
ENSSHAG00000013518	SMARCA1	59	81.166	ENSPNYG00000012299	smarca5	87	81.106	Pundamilia_nyererei
ENSSHAG00000013518	SMARCA1	99	86.023	ENSRNOG00000003762	Smarca1	92	86.023	Rattus_norvegicus
ENSSHAG00000013518	SMARCA1	99	86.639	ENSRROG00000034167	SMARCA1	92	86.639	Rhinopithecus_roxellana
ENSSHAG00000013518	SMARCA1	99	86.639	ENSSBOG00000020641	SMARCA1	99	86.639	Saimiri_boliviensis_boliviensis
ENSSHAG00000013518	SMARCA1	99	80.536	ENSSFOG00015016794	smarca5	100	80.536	Scleropages_formosus
ENSSHAG00000013518	SMARCA1	99	84.205	ENSSFOG00015009043	smarca1	95	84.205	Scleropages_formosus
ENSSHAG00000013518	SMARCA1	99	79.321	ENSSMAG00000004801	smarca5	94	79.321	Scophthalmus_maximus
ENSSHAG00000013518	SMARCA1	99	79.115	ENSSDUG00000020690	smarca5	94	79.115	Seriola_dumerili
ENSSHAG00000013518	SMARCA1	99	79.115	ENSSLDG00000025190	smarca5	94	79.115	Seriola_lalandi_dorsalis
ENSSHAG00000013518	SMARCA1	84	82.979	ENSSARG00000000842	SMARCA1	83	82.979	Sorex_araneus
ENSSHAG00000013518	SMARCA1	97	88.608	ENSSPUG00000000590	SMARCA1	92	88.608	Sphenodon_punctatus
ENSSHAG00000013518	SMARCA1	99	79.630	ENSSPAG00000002894	smarca5	97	80.525	Stegastes_partitus
ENSSHAG00000013518	SMARCA1	99	86.303	ENSSSCG00000012649	SMARCA1	94	86.317	Sus_scrofa
ENSSHAG00000013518	SMARCA1	99	88.284	ENSTGUG00000003899	-	99	88.284	Taeniopygia_guttata
ENSSHAG00000013518	SMARCA1	99	79.630	ENSTRUG00000014094	smarca5	94	79.630	Takifugu_rubripes
ENSSHAG00000013518	SMARCA1	99	79.034	ENSTNIG00000017717	smarca5	93	78.909	Tetraodon_nigroviridis
ENSSHAG00000013518	SMARCA1	91	84.785	ENSTBEG00000014973	SMARCA1	91	84.785	Tupaia_belangeri
ENSSHAG00000013518	SMARCA1	97	82.676	ENSTTRG00000006168	SMARCA1	97	82.573	Tursiops_truncatus
ENSSHAG00000013518	SMARCA1	99	86.331	ENSUAMG00000020201	SMARCA1	92	86.331	Ursus_americanus
ENSSHAG00000013518	SMARCA1	99	82.407	ENSUMAG00000004073	SMARCA1	97	81.421	Ursus_maritimus
ENSSHAG00000013518	SMARCA1	78	85.209	ENSVPAG00000010492	-	79	85.209	Vicugna_pacos
ENSSHAG00000013518	SMARCA1	99	86.536	ENSVVUG00000008878	SMARCA1	97	87.325	Vulpes_vulpes
ENSSHAG00000013518	SMARCA1	99	85.920	ENSXETG00000001526	smarca1	97	85.920	Xenopus_tropicalis
ENSSHAG00000013518	SMARCA1	99	79.733	ENSXCOG00000011170	smarca5	96	79.733	Xiphophorus_couchianus
ENSSHAG00000013518	SMARCA1	99	79.733	ENSXMAG00000009678	smarca5	98	81.291	Xiphophorus_maculatus