EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000013538 (Gene tree)
Gene ID: 100925958
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 74918 bases
Position: chrGL849892.1:1255818-1330735
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000015887	ResIII	PF04851.15	1.7e-05	1	1
ENSSHAP00000015888	ResIII	PF04851.15	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000016017	SMARCAL1-201	2835	-	ENSSHAP00000015887	945 (aa)	-	G3WKD2
ENSSHAT00000016018	SMARCAL1-202	2733	-	ENSSHAP00000015888	911 (aa)	-	G3WKD3

Gene Model

Click here to download ENSSHAG00000013538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000013538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000013538	SMARCAL1	100	58.411	ENSG00000138375	SMARCAL1	99	74.214	Homo_sapiens
ENSSHAG00000013538	SMARCAL1	79	57.359	ENSAPOG00000020156	SMARCAL1	78	57.359	Acanthochromis_polyacanthus
ENSSHAG00000013538	SMARCAL1	71	60.030	ENSACIG00000001500	smarcal1	83	60.030	Amphilophus_citrinellus
ENSSHAG00000013538	SMARCAL1	75	58.781	ENSAOCG00000014266	SMARCAL1	98	48.986	Amphiprion_ocellaris
ENSSHAG00000013538	SMARCAL1	79	57.873	ENSAPEG00000015861	SMARCAL1	99	58.915	Amphiprion_percula
ENSSHAG00000013538	SMARCAL1	99	49.630	ENSATEG00000020624	SMARCAL1	99	48.954	Anabas_testudineus
ENSSHAG00000013538	SMARCAL1	100	51.351	ENSAPLG00000009864	SMARCAL1	99	51.789	Anas_platyrhynchos
ENSSHAG00000013538	SMARCAL1	83	77.778	ENSACAG00000004612	SMARCAL1	77	77.778	Anolis_carolinensis
ENSSHAG00000013538	SMARCAL1	96	51.163	ENSACLG00000015990	SMARCAL1	97	50.054	Astatotilapia_calliptera
ENSSHAG00000013538	SMARCAL1	99	51.728	ENSAMXG00000003350	smarcal1	99	51.233	Astyanax_mexicanus
ENSSHAG00000013538	SMARCAL1	99	62.236	ENSCPBG00000013599	SMARCAL1	99	62.236	Chrysemys_picta_bellii
ENSSHAG00000013538	SMARCAL1	70	45.008	ENSCING00000009308	-	100	45.016	Ciona_intestinalis
ENSSHAG00000013538	SMARCAL1	97	48.802	ENSCSEG00000010785	SMARCAL1	99	50.221	Cynoglossus_semilaevis
ENSSHAG00000013538	SMARCAL1	100	49.784	ENSCVAG00000018780	SMARCAL1	99	49.946	Cyprinodon_variegatus
ENSSHAG00000013538	SMARCAL1	78	41.723	ENSEBUG00000011906	SMARCAL1	99	41.745	Eptatretus_burgeri
ENSSHAG00000013538	SMARCAL1	78	55.659	ENSELUG00000010440	-	99	55.659	Esox_lucius
ENSSHAG00000013538	SMARCAL1	99	52.984	ENSFALG00000003981	SMARCAL1	99	52.722	Ficedula_albicollis
ENSSHAG00000013538	SMARCAL1	79	55.846	ENSFHEG00000008380	SMARCAL1	99	49.142	Fundulus_heteroclitus
ENSSHAG00000013538	SMARCAL1	56	56.492	ENSGMOG00000010034	smarcal1	94	54.889	Gadus_morhua
ENSSHAG00000013538	SMARCAL1	99	52.626	ENSGALG00000011475	RPL37A	99	52.472	Gallus_gallus
ENSSHAG00000013538	SMARCAL1	71	58.979	ENSGACG00000006073	SMARCAL1	100	61.949	Gasterosteus_aculeatus
ENSSHAG00000013538	SMARCAL1	79	66.364	ENSGAGG00000015660	SMARCAL1	78	66.364	Gopherus_agassizii
ENSSHAG00000013538	SMARCAL1	98	49.475	ENSHBUG00000002973	smarcal1	97	50.161	Haplochromis_burtoni
ENSSHAG00000013538	SMARCAL1	95	51.091	ENSHCOG00000017921	smarcal1	81	57.933	Hippocampus_comes
ENSSHAG00000013538	SMARCAL1	97	47.826	ENSKMAG00000012023	SMARCAL1	99	47.021	Kryptolebias_marmoratus
ENSSHAG00000013538	SMARCAL1	91	48.546	ENSLBEG00000003493	smarcal1	100	48.546	Labrus_bergylta
ENSSHAG00000013538	SMARCAL1	71	56.753	ENSLBEG00000022915	smarcal1	85	56.753	Labrus_bergylta
ENSSHAG00000013538	SMARCAL1	85	56.676	ENSLACG00000010974	SMARCAL1	99	48.223	Latimeria_chalumnae
ENSSHAG00000013538	SMARCAL1	92	53.310	ENSLOCG00000009637	smarcal1	88	62.348	Lepisosteus_oculatus
ENSSHAG00000013538	SMARCAL1	97	49.782	ENSMAMG00000000828	SMARCAL1	99	49.836	Mastacembelus_armatus
ENSSHAG00000013538	SMARCAL1	96	51.052	ENSMZEG00005007660	SMARCAL1	97	49.946	Maylandia_zebra
ENSSHAG00000013538	SMARCAL1	99	54.386	ENSMGAG00000011658	SMARCAL1	99	54.592	Meleagris_gallopavo
ENSSHAG00000013538	SMARCAL1	91	55.378	ENSMMOG00000003842	smarcal1	93	57.674	Mola_mola
ENSSHAG00000013538	SMARCAL1	100	69.836	ENSMODG00000015544	SMARCAL1	99	69.836	Monodelphis_domestica
ENSSHAG00000013538	SMARCAL1	71	59.091	ENSNBRG00000016273	smarcal1	85	59.119	Neolamprologus_brichardi
ENSSHAG00000013538	SMARCAL1	93	69.820	ENSMEUG00000004395	SMARCAL1	100	69.820	Notamacropus_eugenii
ENSSHAG00000013538	SMARCAL1	98	50.756	ENSONIG00000009036	smarcal1	100	59.448	Oreochromis_niloticus
ENSSHAG00000013538	SMARCAL1	98	50.871	ENSORLG00000016455	SMARCAL1	98	50.871	Oryzias_latipes
ENSSHAG00000013538	SMARCAL1	97	51.045	ENSORLG00020001610	SMARCAL1	97	51.045	Oryzias_latipes_hni
ENSSHAG00000013538	SMARCAL1	97	51.381	ENSORLG00015001865	SMARCAL1	97	51.381	Oryzias_latipes_hsok
ENSSHAG00000013538	SMARCAL1	97	52.658	ENSOMEG00000001845	smarcal1	96	52.658	Oryzias_melastigma
ENSSHAG00000013538	SMARCAL1	79	55.662	ENSPMGG00000019092	SMARCAL1	99	48.466	Periophthalmus_magnuspinnatus
ENSSHAG00000013538	SMARCAL1	100	72.979	ENSPCIG00000022514	SMARCAL1	99	73.539	Phascolarctos_cinereus
ENSSHAG00000013538	SMARCAL1	85	56.259	ENSPFOG00000000560	SMARCAL1	88	56.463	Poecilia_formosa
ENSSHAG00000013538	SMARCAL1	85	56.396	ENSPMEG00000018146	SMARCAL1	88	56.327	Poecilia_mexicana
ENSSHAG00000013538	SMARCAL1	63	60.700	ENSPREG00000009591	SMARCAL1	89	69.302	Poecilia_reticulata
ENSSHAG00000013538	SMARCAL1	100	51.668	ENSPNAG00000014900	smarcal1	94	51.665	Pygocentrus_nattereri
ENSSHAG00000013538	SMARCAL1	99	48.472	ENSSMAG00000010427	SMARCAL1	99	47.902	Scophthalmus_maximus
ENSSHAG00000013538	SMARCAL1	73	57.932	ENSSDUG00000017470	SMARCAL1	74	57.932	Seriola_dumerili
ENSSHAG00000013538	SMARCAL1	99	49.572	ENSSLDG00000007224	SMARCAL1	99	49.572	Seriola_lalandi_dorsalis
ENSSHAG00000013538	SMARCAL1	91	61.454	ENSSPUG00000015369	SMARCAL1	83	61.591	Sphenodon_punctatus
ENSSHAG00000013538	SMARCAL1	70	59.568	ENSSPAG00000003742	smarcal1	98	51.306	Stegastes_partitus
ENSSHAG00000013538	SMARCAL1	94	54.415	ENSSSCG00000035501	SMARCAL1	99	54.415	Sus_scrofa
ENSSHAG00000013538	SMARCAL1	75	64.611	ENSTGUG00000005079	SMARCAL1	99	64.611	Taeniopygia_guttata
ENSSHAG00000013538	SMARCAL1	98	48.053	ENSTRUG00000010701	SMARCAL1	99	48.053	Takifugu_rubripes
ENSSHAG00000013538	SMARCAL1	100	51.461	ENSTTRG00000009001	SMARCAL1	99	51.461	Tursiops_truncatus
ENSSHAG00000013538	SMARCAL1	99	53.403	ENSXETG00000000465	smarcal1	99	53.403	Xenopus_tropicalis