EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000013832 (Gene tree)
Gene ID: 100928199
Gene Symbol: -
Alias: HUD|PNEM
Full Name: -
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 107705 bases
Position: chrGL856723.1:1327886-1435590
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000016252	RRM_5	PF13893.6	1.4e-13	1	2
ENSSHAP00000016252	RRM_5	PF13893.6	1.4e-13	2	2
ENSSHAP00000016253	RRM_5	PF13893.6	1.5e-13	1	2
ENSSHAP00000016253	RRM_5	PF13893.6	1.5e-13	2	2
ENSSHAP00000016252	RRM_1	PF00076.22	1e-65	1	3
ENSSHAP00000016252	RRM_1	PF00076.22	1e-65	2	3
ENSSHAP00000016252	RRM_1	PF00076.22	1e-65	3	3
ENSSHAP00000016253	RRM_1	PF00076.22	1.1e-65	1	3
ENSSHAP00000016253	RRM_1	PF00076.22	1.1e-65	2	3
ENSSHAP00000016253	RRM_1	PF00076.22	1.1e-65	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000016388	-	3810	-	ENSSHAP00000016253	371 (aa)	-	G3WLE8
ENSSHAT00000016387	-	4070	-	ENSSHAP00000016252	366 (aa)	-	G3WLE7

Gene Model

Click here to download ENSSHAG00000013832's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000013832's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000013832	-	69	39.506	ENSSHAG00000008823	CELF5	51	39.506
ENSSHAG00000013832	-	70	40.741	ENSSHAG00000017438	CELF1	56	40.741
ENSSHAG00000013832	-	64	35.754	ENSSHAG00000004939	RBMS2	78	34.673
ENSSHAG00000013832	-	68	39.506	ENSSHAG00000009688	-	51	39.506
ENSSHAG00000013832	-	98	86.667	ENSSHAG00000006756	ELAVL2	100	87.097
ENSSHAG00000013832	-	88	36.145	ENSSHAG00000003431	-	59	36.145
ENSSHAG00000013832	-	71	40.449	ENSSHAG00000015744	CELF3	55	40.449
ENSSHAG00000013832	-	64	36.872	ENSSHAG00000012271	RBMS1	50	34.419
ENSSHAG00000013832	-	94	64.535	ENSSHAG00000001657	-	94	64.535
ENSSHAG00000013832	-	67	38.889	ENSSHAG00000006035	CIRBP	53	38.889
ENSSHAG00000013832	-	87	35.897	ENSSHAG00000012508	TIAL1	73	35.897
ENSSHAG00000013832	-	90	71.299	ENSSHAG00000008109	ELAVL1	98	71.299
ENSSHAG00000013832	-	88	34.940	ENSSHAG00000018139	PABPC4	58	34.940
ENSSHAG00000013832	-	64	37.989	ENSSHAG00000002411	RBMS3	52	38.333
ENSSHAG00000013832	-	94	35.897	ENSSHAG00000012544	TIA1	71	35.897
ENSSHAG00000013832	-	90	34.940	ENSSHAG00000000511	-	59	31.126
ENSSHAG00000013832	-	96	83.682	ENSSHAG00000005583	ELAVL3	100	83.682

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000013832	-	100	98.907	ENSG00000162374	ELAVL4	100	98.907	Homo_sapiens
ENSSHAG00000013832	-	99	94.809	ENSAPOG00000020329	elavl4	96	94.795	Acanthochromis_polyacanthus
ENSSHAG00000013832	-	100	94.474	ENSAMEG00000017455	ELAVL4	100	93.766	Ailuropoda_melanoleuca
ENSSHAG00000013832	-	98	95.291	ENSACIG00000008793	elavl4	100	95.291	Amphilophus_citrinellus
ENSSHAG00000013832	-	66	91.304	ENSAOCG00000022907	elavl4	89	91.304	Amphiprion_ocellaris
ENSSHAG00000013832	-	66	83.200	ENSAOCG00000022503	elavl4	69	83.200	Amphiprion_ocellaris
ENSSHAG00000013832	-	100	94.022	ENSAPEG00000022826	elavl4	95	94.022	Amphiprion_percula
ENSSHAG00000013832	-	100	94.293	ENSATEG00000006136	elavl4	100	94.580	Anabas_testudineus
ENSSHAG00000013832	-	100	95.756	ENSACAG00000004527	ELAVL4	100	95.026	Anolis_carolinensis
ENSSHAG00000013832	-	100	98.634	ENSANAG00000030598	ELAVL4	100	98.634	Aotus_nancymaae
ENSSHAG00000013832	-	99	94.309	ENSACLG00000002786	elavl4	96	94.293	Astatotilapia_calliptera
ENSSHAG00000013832	-	99	96.154	ENSAMXG00000000687	elavl4	96	96.143	Astyanax_mexicanus
ENSSHAG00000013832	-	100	98.634	ENSBTAG00000021046	ELAVL4	100	98.634	Bos_taurus
ENSSHAG00000013832	-	88	62.385	WBGene00001368	exc-7	70	62.385	Caenorhabditis_elegans
ENSSHAG00000013832	-	100	98.087	ENSCJAG00000013725	ELAVL4	100	98.361	Callithrix_jacchus
ENSSHAG00000013832	-	100	98.634	ENSCAFG00000003927	ELAVL4	100	98.634	Canis_familiaris
ENSSHAG00000013832	-	100	97.814	ENSCAFG00020013581	ELAVL4	100	98.093	Canis_lupus_dingo
ENSSHAG00000013832	-	100	98.634	ENSCHIG00000002038	ELAVL4	100	98.634	Capra_hircus
ENSSHAG00000013832	-	88	98.400	ENSTSYG00000004130	ELAVL4	94	98.400	Carlito_syrichta
ENSSHAG00000013832	-	98	70.195	ENSCAPG00000011942	-	99	70.195	Cavia_aperea
ENSSHAG00000013832	-	69	99.153	ENSCAPG00000005993	ELAVL4	72	99.153	Cavia_aperea
ENSSHAG00000013832	-	100	98.087	ENSCPOG00000002044	-	100	98.361	Cavia_porcellus
ENSSHAG00000013832	-	98	69.061	ENSCPOG00000022816	-	99	69.061	Cavia_porcellus
ENSSHAG00000013832	-	100	98.087	ENSCCAG00000024797	ELAVL4	100	98.361	Cebus_capucinus
ENSSHAG00000013832	-	100	98.361	ENSCATG00000029867	ELAVL4	100	98.634	Cercocebus_atys
ENSSHAG00000013832	-	100	98.634	ENSCLAG00000005476	ELAVL4	100	98.634	Chinchilla_lanigera
ENSSHAG00000013832	-	100	98.907	ENSCSAG00000001257	ELAVL4	100	98.907	Chlorocebus_sabaeus
ENSSHAG00000013832	-	100	94.211	ENSCHOG00000002464	ELAVL4	100	93.506	Choloepus_hoffmanni
ENSSHAG00000013832	-	100	99.180	ENSCPBG00000010017	ELAVL4	100	99.725	Chrysemys_picta_bellii
ENSSHAG00000013832	-	92	43.548	ENSCING00000009052	-	100	43.548	Ciona_intestinalis
ENSSHAG00000013832	-	100	98.361	ENSCANG00000043683	ELAVL4	100	98.634	Colobus_angolensis_palliatus
ENSSHAG00000013832	-	100	98.087	ENSCGRG00001020348	Elavl4	100	98.361	Cricetulus_griseus_chok1gshd
ENSSHAG00000013832	-	100	98.087	ENSCGRG00000009162	Elavl4	100	98.361	Cricetulus_griseus_crigri
ENSSHAG00000013832	-	99	95.082	ENSCSEG00000020141	elavl4	96	95.068	Cynoglossus_semilaevis
ENSSHAG00000013832	-	99	94.309	ENSCVAG00000019080	elavl4	100	89.894	Cyprinodon_variegatus
ENSSHAG00000013832	-	99	96.703	ENSDARG00000045639	elavl4	91	95.913	Danio_rerio
ENSSHAG00000013832	-	100	98.087	ENSDNOG00000033502	ELAVL4	100	97.305	Dasypus_novemcinctus
ENSSHAG00000013832	-	100	98.087	ENSDORG00000012729	Elavl4	100	98.361	Dipodomys_ordii
ENSSHAG00000013832	-	99	88.329	ENSETEG00000013779	ELAVL4	100	88.329	Echinops_telfairi
ENSSHAG00000013832	-	100	97.814	ENSEASG00005010728	ELAVL4	99	98.352	Equus_asinus_asinus
ENSSHAG00000013832	-	100	98.361	ENSECAG00000022284	ELAVL4	100	98.361	Equus_caballus
ENSSHAG00000013832	-	100	94.474	ENSEEUG00000008766	ELAVL4	100	93.766	Erinaceus_europaeus
ENSSHAG00000013832	-	99	95.913	ENSELUG00000008025	elavl4	91	95.913	Esox_lucius
ENSSHAG00000013832	-	100	98.087	ENSFCAG00000010438	ELAVL4	100	98.361	Felis_catus
ENSSHAG00000013832	-	100	99.180	ENSFALG00000005331	ELAVL4	100	98.383	Ficedula_albicollis
ENSSHAG00000013832	-	100	98.634	ENSFDAG00000014507	ELAVL4	100	98.634	Fukomys_damarensis
ENSSHAG00000013832	-	100	94.565	ENSFHEG00000004530	elavl4	93	94.837	Fundulus_heteroclitus
ENSSHAG00000013832	-	98	96.379	ENSGMOG00000006515	elavl4	100	96.379	Gadus_morhua
ENSSHAG00000013832	-	100	99.727	ENSGALG00000010533	ELAVL4	100	99.727	Gallus_gallus
ENSSHAG00000013832	-	86	93.711	ENSGAFG00000015956	elavl4	84	94.304	Gambusia_affinis
ENSSHAG00000013832	-	98	94.460	ENSGACG00000011152	elavl4	100	94.460	Gasterosteus_aculeatus
ENSSHAG00000013832	-	99	99.725	ENSGAGG00000018269	ELAVL4	99	97.838	Gopherus_agassizii
ENSSHAG00000013832	-	100	98.361	ENSGGOG00000000634	ELAVL4	100	98.634	Gorilla_gorilla
ENSSHAG00000013832	-	99	95.082	ENSHBUG00000009691	elavl4	96	95.068	Haplochromis_burtoni
ENSSHAG00000013832	-	100	98.361	ENSHGLG00000000485	ELAVL4	100	98.361	Heterocephalus_glaber_female
ENSSHAG00000013832	-	100	98.361	ENSHGLG00100002567	ELAVL4	100	98.361	Heterocephalus_glaber_male
ENSSHAG00000013832	-	98	95.568	ENSHCOG00000002490	elavl4	100	95.568	Hippocampus_comes
ENSSHAG00000013832	-	99	95.879	ENSIPUG00000001381	elavl4	92	95.879	Ictalurus_punctatus
ENSSHAG00000013832	-	100	98.634	ENSSTOG00000027271	ELAVL4	100	98.634	Ictidomys_tridecemlineatus
ENSSHAG00000013832	-	100	98.087	ENSJJAG00000023099	Elavl4	100	98.361	Jaculus_jaculus
ENSSHAG00000013832	-	99	94.309	ENSKMAG00000022289	elavl4	92	94.309	Kryptolebias_marmoratus
ENSSHAG00000013832	-	52	99.130	ENSLBEG00000015023	elavl4	100	99.130	Labrus_bergylta
ENSSHAG00000013832	-	99	94.580	ENSLBEG00000007096	elavl4	93	90.415	Labrus_bergylta
ENSSHAG00000013832	-	99	99.174	ENSLACG00000008316	ELAVL4	100	97.832	Latimeria_chalumnae
ENSSHAG00000013832	-	99	96.978	ENSLOCG00000009363	elavl4	89	96.978	Lepisosteus_oculatus
ENSSHAG00000013832	-	100	94.474	ENSLAFG00000001087	ELAVL4	100	93.927	Loxodonta_africana
ENSSHAG00000013832	-	100	98.361	ENSMFAG00000039866	ELAVL4	100	98.634	Macaca_fascicularis
ENSSHAG00000013832	-	100	98.907	ENSMMUG00000021933	ELAVL4	100	98.907	Macaca_mulatta
ENSSHAG00000013832	-	100	98.634	ENSMNEG00000035576	ELAVL4	100	98.634	Macaca_nemestrina
ENSSHAG00000013832	-	100	98.361	ENSMLEG00000028616	ELAVL4	100	98.634	Mandrillus_leucophaeus
ENSSHAG00000013832	-	100	94.293	ENSMAMG00000004000	elavl4	100	94.565	Mastacembelus_armatus
ENSSHAG00000013832	-	99	95.082	ENSMZEG00005010690	elavl4	92	95.082	Maylandia_zebra
ENSSHAG00000013832	-	100	98.910	ENSMGAG00000010928	ELAVL4	99	99.183	Meleagris_gallopavo
ENSSHAG00000013832	-	100	98.087	ENSMAUG00000021566	Elavl4	100	98.361	Mesocricetus_auratus
ENSSHAG00000013832	-	100	98.361	ENSMICG00000003286	ELAVL4	100	98.886	Microcebus_murinus
ENSSHAG00000013832	-	100	98.087	ENSMOCG00000010309	Elavl4	100	98.361	Microtus_ochrogaster
ENSSHAG00000013832	-	100	94.293	ENSMMOG00000020264	elavl4	96	94.070	Mola_mola
ENSSHAG00000013832	-	94	98.258	ENSMODG00000001300	-	100	98.258	Monodelphis_domestica
ENSSHAG00000013832	-	98	62.465	ENSMODG00000003850	-	100	64.000	Monodelphis_domestica
ENSSHAG00000013832	-	99	94.809	ENSMALG00000016432	elavl4	96	94.795	Monopterus_albus
ENSSHAG00000013832	-	100	98.634	MGP_CAROLIEiJ_G0026289	Elavl4	100	98.634	Mus_caroli
ENSSHAG00000013832	-	100	98.634	ENSMUSG00000028546	Elavl4	100	98.634	Mus_musculus
ENSSHAG00000013832	-	100	98.634	MGP_PahariEiJ_G0028622	Elavl4	100	98.634	Mus_pahari
ENSSHAG00000013832	-	100	98.634	MGP_SPRETEiJ_G0027258	Elavl4	100	98.634	Mus_spretus
ENSSHAG00000013832	-	100	95.000	ENSMPUG00000007192	ELAVL4	100	95.000	Mustela_putorius_furo
ENSSHAG00000013832	-	100	97.814	ENSMLUG00000006226	ELAVL4	99	97.814	Myotis_lucifugus
ENSSHAG00000013832	-	100	97.814	ENSNGAG00000023123	Elavl4	100	98.087	Nannospalax_galili
ENSSHAG00000013832	-	100	98.361	ENSNLEG00000016303	ELAVL4	100	98.634	Nomascus_leucogenys
ENSSHAG00000013832	-	99	96.543	ENSMEUG00000007145	ELAVL4	100	96.543	Notamacropus_eugenii
ENSSHAG00000013832	-	100	94.474	ENSOPRG00000015300	ELAVL4	100	93.766	Ochotona_princeps
ENSSHAG00000013832	-	100	98.087	ENSODEG00000006770	ELAVL4	100	98.361	Octodon_degus
ENSSHAG00000013832	-	100	94.293	ENSONIG00000002360	elavl4	99	94.565	Oreochromis_niloticus
ENSSHAG00000013832	-	87	92.149	ENSOANG00000007377	ELAVL4	100	92.149	Ornithorhynchus_anatinus
ENSSHAG00000013832	-	99	98.623	ENSOCUG00000016262	ELAVL4	93	98.623	Oryctolagus_cuniculus
ENSSHAG00000013832	-	99	95.355	ENSORLG00000028487	elavl4	91	95.355	Oryzias_latipes
ENSSHAG00000013832	-	99	95.355	ENSORLG00020014277	elavl4	92	95.355	Oryzias_latipes_hni
ENSSHAG00000013832	-	99	95.355	ENSORLG00015010143	elavl4	92	95.355	Oryzias_latipes_hsok
ENSSHAG00000013832	-	99	94.809	ENSOMEG00000009988	elavl4	92	94.038	Oryzias_melastigma
ENSSHAG00000013832	-	100	98.087	ENSOGAG00000016990	ELAVL4	99	98.087	Otolemur_garnettii
ENSSHAG00000013832	-	100	98.087	ENSOARG00000004264	ELAVL4	100	97.305	Ovis_aries
ENSSHAG00000013832	-	99	98.901	ENSPPAG00000042402	ELAVL4	99	98.898	Pan_paniscus
ENSSHAG00000013832	-	100	98.087	ENSPPRG00000002764	ELAVL4	100	98.361	Panthera_pardus
ENSSHAG00000013832	-	100	98.087	ENSPTIG00000016727	ELAVL4	100	98.361	Panthera_tigris_altaica
ENSSHAG00000013832	-	100	98.361	ENSPTRG00000000723	ELAVL4	100	98.634	Pan_troglodytes
ENSSHAG00000013832	-	100	98.907	ENSPANG00000017754	ELAVL4	100	98.907	Papio_anubis
ENSSHAG00000013832	-	99	96.429	ENSPKIG00000006999	elavl4	98	95.913	Paramormyrops_kingsleyae
ENSSHAG00000013832	-	100	99.454	ENSPSIG00000008545	ELAVL4	100	99.454	Pelodiscus_sinensis
ENSSHAG00000013832	-	100	94.565	ENSPMGG00000022175	elavl4	100	94.837	Periophthalmus_magnuspinnatus
ENSSHAG00000013832	-	99	79.839	ENSPEMG00000021058	Elavl3	100	79.521	Peromyscus_maniculatus_bairdii
ENSSHAG00000013832	-	88	63.272	ENSPCIG00000017116	-	99	59.066	Phascolarctos_cinereus
ENSSHAG00000013832	-	99	95.355	ENSPFOG00000004811	elavl4	100	92.857	Poecilia_formosa
ENSSHAG00000013832	-	99	95.342	ENSPLAG00000008085	elavl4	100	94.580	Poecilia_latipinna
ENSSHAG00000013832	-	99	95.355	ENSPMEG00000015619	elavl4	89	95.355	Poecilia_mexicana
ENSSHAG00000013832	-	99	95.355	ENSPREG00000018937	elavl4	96	95.342	Poecilia_reticulata
ENSSHAG00000013832	-	100	98.087	ENSPPYG00000001367	ELAVL4	100	97.305	Pongo_abelii
ENSSHAG00000013832	-	100	94.474	ENSPCAG00000008215	ELAVL4	100	93.766	Procavia_capensis
ENSSHAG00000013832	-	100	98.361	ENSPCOG00000024957	ELAVL4	100	98.634	Propithecus_coquereli
ENSSHAG00000013832	-	88	96.970	ENSPVAG00000003632	ELAVL4	85	96.970	Pteropus_vampyrus
ENSSHAG00000013832	-	100	94.293	ENSPNYG00000021720	elavl4	100	94.565	Pundamilia_nyererei
ENSSHAG00000013832	-	99	96.154	ENSPNAG00000017169	elavl4	96	96.143	Pygocentrus_nattereri
ENSSHAG00000013832	-	100	94.474	ENSRNOG00000023601	Elavl4	100	93.766	Rattus_norvegicus
ENSSHAG00000013832	-	100	98.907	ENSRBIG00000043810	ELAVL4	100	98.907	Rhinopithecus_bieti
ENSSHAG00000013832	-	100	98.361	ENSRROG00000044786	ELAVL4	100	98.634	Rhinopithecus_roxellana
ENSSHAG00000013832	-	100	98.087	ENSSBOG00000022965	ELAVL4	100	98.626	Saimiri_boliviensis_boliviensis
ENSSHAG00000013832	-	99	96.429	ENSSFOG00015015838	elavl4	96	96.419	Scleropages_formosus
ENSSHAG00000013832	-	99	95.628	ENSSMAG00000006881	elavl4	96	94.837	Scophthalmus_maximus
ENSSHAG00000013832	-	99	95.068	ENSSDUG00000000045	elavl4	93	94.070	Seriola_dumerili
ENSSHAG00000013832	-	99	95.082	ENSSLDG00000005260	elavl4	92	95.082	Seriola_lalandi_dorsalis
ENSSHAG00000013832	-	99	94.960	ENSSARG00000010733	ELAVL4	100	94.960	Sorex_araneus
ENSSHAG00000013832	-	98	99.443	ENSSPUG00000011636	ELAVL4	100	99.443	Sphenodon_punctatus
ENSSHAG00000013832	-	100	94.293	ENSSPAG00000018867	elavl4	97	94.565	Stegastes_partitus
ENSSHAG00000013832	-	100	98.634	ENSSSCG00000037291	ELAVL4	99	98.626	Sus_scrofa
ENSSHAG00000013832	-	99	99.725	ENSTGUG00000008597	ELAVL4	100	99.725	Taeniopygia_guttata
ENSSHAG00000013832	-	98	94.460	ENSTRUG00000000523	elavl4	98	94.460	Takifugu_rubripes
ENSSHAG00000013832	-	99	94.521	ENSTNIG00000015485	elavl4	99	93.784	Tetraodon_nigroviridis
ENSSHAG00000013832	-	93	97.605	ENSTBEG00000011730	ELAVL4	78	97.605	Tupaia_belangeri
ENSSHAG00000013832	-	84	96.581	ENSTTRG00000012441	ELAVL4	66	96.581	Tursiops_truncatus
ENSSHAG00000013832	-	99	98.626	ENSUAMG00000013026	ELAVL4	100	99.127	Ursus_americanus
ENSSHAG00000013832	-	100	98.087	ENSUMAG00000023149	ELAVL4	100	99.127	Ursus_maritimus
ENSSHAG00000013832	-	100	94.474	ENSVPAG00000011606	ELAVL4	100	93.766	Vicugna_pacos
ENSSHAG00000013832	-	100	98.634	ENSVVUG00000006175	ELAVL4	100	98.634	Vulpes_vulpes
ENSSHAG00000013832	-	99	91.603	ENSXETG00000008680	elavl4	100	91.603	Xenopus_tropicalis
ENSSHAG00000013832	-	99	95.355	ENSXMAG00000025683	elavl4	96	95.342	Xiphophorus_maculatus