EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000014163 (Gene tree)
Gene ID: 100924141
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 27241 bases
Position: chrGL856822.1:1409902-1437142
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000016649	EST1	PF10374.9	5.9e-24	1	1
ENSSHAP00000016649	EST1_DNA_bind	PF10373.9	1.6e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000016789	SMG5-201	2997	-	ENSSHAP00000016649	998 (aa)	-	G3WMJ4

Gene Model

Click here to download ENSSHAG00000014163's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000014163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000014163	SMG5	65	41.379	ENSSHAG00000000935	-	96	38.164
ENSSHAG00000014163	SMG5	88	39.535	ENSSHAG00000000561	-	85	39.698
ENSSHAG00000014163	SMG5	99	34.562	ENSSHAG00000009572	-	96	34.363

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000014163	SMG5	100	89.489	ENSG00000198952	SMG5	98	89.089	Homo_sapiens
ENSSHAG00000014163	SMG5	100	66.468	ENSAPOG00000019690	smg5	98	66.201	Acanthochromis_polyacanthus
ENSSHAG00000014163	SMG5	100	86.400	ENSAMEG00000014458	SMG5	100	85.743	Ailuropoda_melanoleuca
ENSSHAG00000014163	SMG5	100	64.626	ENSACIG00000001353	smg5	98	65.953	Amphilophus_citrinellus
ENSSHAG00000014163	SMG5	100	64.798	ENSAOCG00000019483	smg5	96	64.798	Amphiprion_ocellaris
ENSSHAG00000014163	SMG5	100	66.040	ENSAPEG00000022949	smg5	98	66.139	Amphiprion_percula
ENSSHAG00000014163	SMG5	100	64.591	ENSATEG00000005348	smg5	98	66.831	Anabas_testudineus
ENSSHAG00000014163	SMG5	100	79.748	ENSAPLG00000010263	SMG5	100	79.748	Anas_platyrhynchos
ENSSHAG00000014163	SMG5	100	89.189	ENSANAG00000032899	SMG5	99	88.778	Aotus_nancymaae
ENSSHAG00000014163	SMG5	100	63.973	ENSACLG00000009311	smg5	98	64.746	Astatotilapia_calliptera
ENSSHAG00000014163	SMG5	100	87.688	ENSBTAG00000009435	SMG5	98	88.589	Bos_taurus
ENSSHAG00000014163	SMG5	99	43.534	ENSBTAG00000021747	-	97	43.267	Bos_taurus
ENSSHAG00000014163	SMG5	100	89.289	ENSCJAG00000005684	SMG5	98	88.889	Callithrix_jacchus
ENSSHAG00000014163	SMG5	100	88.088	ENSCAFG00000016839	SMG5	98	87.487	Canis_familiaris
ENSSHAG00000014163	SMG5	100	88.088	ENSCAFG00020006061	SMG5	98	87.487	Canis_lupus_dingo
ENSSHAG00000014163	SMG5	100	87.487	ENSCHIG00000007709	SMG5	98	88.388	Capra_hircus
ENSSHAG00000014163	SMG5	99	44.028	ENSCHIG00000006323	-	98	43.707	Capra_hircus
ENSSHAG00000014163	SMG5	100	88.900	ENSTSYG00000004099	SMG5	98	88.500	Carlito_syrichta
ENSSHAG00000014163	SMG5	99	67.137	ENSCAPG00000003631	SMG5	100	68.323	Cavia_aperea
ENSSHAG00000014163	SMG5	100	87.300	ENSCPOG00000015696	SMG5	98	88.100	Cavia_porcellus
ENSSHAG00000014163	SMG5	100	89.389	ENSCCAG00000027409	SMG5	99	88.978	Cebus_capucinus
ENSSHAG00000014163	SMG5	100	89.590	ENSCATG00000030539	SMG5	98	89.189	Cercocebus_atys
ENSSHAG00000014163	SMG5	100	87.900	ENSCLAG00000003983	SMG5	98	88.700	Chinchilla_lanigera
ENSSHAG00000014163	SMG5	100	89.590	ENSCSAG00000002120	SMG5	98	89.189	Chlorocebus_sabaeus
ENSSHAG00000014163	SMG5	55	87.004	ENSCHOG00000008741	-	57	87.004	Choloepus_hoffmanni
ENSSHAG00000014163	SMG5	96	78.607	ENSCPBG00000025848	SMG5	100	79.658	Chrysemys_picta_bellii
ENSSHAG00000014163	SMG5	94	34.436	ENSCING00000008706	-	97	34.365	Ciona_intestinalis
ENSSHAG00000014163	SMG5	100	85.586	ENSCANG00000029208	SMG5	98	85.185	Colobus_angolensis_palliatus
ENSSHAG00000014163	SMG5	100	86.000	ENSCGRG00001006336	Smg5	98	86.300	Cricetulus_griseus_chok1gshd
ENSSHAG00000014163	SMG5	100	86.000	ENSCGRG00000005111	Smg5	100	86.286	Cricetulus_griseus_crigri
ENSSHAG00000014163	SMG5	100	63.395	ENSCSEG00000014220	smg5	98	64.712	Cynoglossus_semilaevis
ENSSHAG00000014163	SMG5	100	59.226	ENSCVAG00000000529	smg5	97	59.842	Cyprinodon_variegatus
ENSSHAG00000014163	SMG5	100	84.685	ENSDNOG00000000051	SMG5	98	84.284	Dasypus_novemcinctus
ENSSHAG00000014163	SMG5	95	36.164	ENSDNOG00000039862	-	100	35.744	Dasypus_novemcinctus
ENSSHAG00000014163	SMG5	100	88.500	ENSDORG00000010382	Smg5	98	87.800	Dipodomys_ordii
ENSSHAG00000014163	SMG5	64	37.037	FBgn0019890	Smg5	60	37.037	Drosophila_melanogaster
ENSSHAG00000014163	SMG5	82	90.654	ENSETEG00000010336	SMG5	88	90.654	Echinops_telfairi
ENSSHAG00000014163	SMG5	93	47.246	ENSEBUG00000003739	smg5	98	46.688	Eptatretus_burgeri
ENSSHAG00000014163	SMG5	100	88.989	ENSEASG00005019122	SMG5	98	88.589	Equus_asinus_asinus
ENSSHAG00000014163	SMG5	100	88.989	ENSECAG00000001389	SMG5	98	88.589	Equus_caballus
ENSSHAG00000014163	SMG5	74	96.830	ENSEEUG00000012690	SMG5	75	96.830	Erinaceus_europaeus
ENSSHAG00000014163	SMG5	100	64.873	ENSELUG00000012585	smg5	98	64.579	Esox_lucius
ENSSHAG00000014163	SMG5	100	87.588	ENSFCAG00000011783	SMG5	98	87.000	Felis_catus
ENSSHAG00000014163	SMG5	59	82.972	ENSFALG00000001166	-	99	82.972	Ficedula_albicollis
ENSSHAG00000014163	SMG5	99	86.587	ENSFDAG00000017388	SMG5	100	86.787	Fukomys_damarensis
ENSSHAG00000014163	SMG5	99	60.743	ENSFHEG00000013939	smg5	100	60.402	Fundulus_heteroclitus
ENSSHAG00000014163	SMG5	100	77.810	ENSGALG00000029918	-	98	76.550	Gallus_gallus
ENSSHAG00000014163	SMG5	52	51.036	ENSGAFG00000021691	smg5	98	57.077	Gambusia_affinis
ENSSHAG00000014163	SMG5	100	80.309	ENSGAGG00000016131	SMG5	98	80.193	Gopherus_agassizii
ENSSHAG00000014163	SMG5	100	89.590	ENSGGOG00000010932	SMG5	98	89.189	Gorilla_gorilla
ENSSHAG00000014163	SMG5	100	64.016	ENSHBUG00000008654	smg5	98	65.044	Haplochromis_burtoni
ENSSHAG00000014163	SMG5	100	86.300	ENSHGLG00000019152	SMG5	98	86.500	Heterocephalus_glaber_female
ENSSHAG00000014163	SMG5	90	86.903	ENSHGLG00100015948	SMG5	97	87.125	Heterocephalus_glaber_male
ENSSHAG00000014163	SMG5	100	53.731	ENSHCOG00000010229	smg5	91	73.750	Hippocampus_comes
ENSSHAG00000014163	SMG5	100	61.887	ENSIPUG00000006624	Smg5	98	62.257	Ictalurus_punctatus
ENSSHAG00000014163	SMG5	100	88.388	ENSSTOG00000001780	SMG5	98	87.988	Ictidomys_tridecemlineatus
ENSSHAG00000014163	SMG5	100	86.913	ENSJJAG00000022763	Smg5	98	86.913	Jaculus_jaculus
ENSSHAG00000014163	SMG5	52	60.145	ENSKMAG00000014586	smg5	98	62.072	Kryptolebias_marmoratus
ENSSHAG00000014163	SMG5	100	64.551	ENSLBEG00000002145	smg5	98	65.358	Labrus_bergylta
ENSSHAG00000014163	SMG5	99	65.980	ENSLACG00000010521	SMG5	97	65.784	Latimeria_chalumnae
ENSSHAG00000014163	SMG5	95	79.851	ENSLOCG00000008380	smg5	91	79.800	Lepisosteus_oculatus
ENSSHAG00000014163	SMG5	99	88.277	ENSLAFG00000006241	SMG5	98	87.876	Loxodonta_africana
ENSSHAG00000014163	SMG5	100	89.489	ENSMFAG00000045357	SMG5	98	89.089	Macaca_fascicularis
ENSSHAG00000014163	SMG5	100	89.389	ENSMMUG00000000090	SMG5	98	88.989	Macaca_mulatta
ENSSHAG00000014163	SMG5	100	89.389	ENSMNEG00000044425	SMG5	98	88.989	Macaca_nemestrina
ENSSHAG00000014163	SMG5	100	83.250	ENSMLEG00000041192	SMG5	98	82.851	Mandrillus_leucophaeus
ENSSHAG00000014163	SMG5	100	61.191	ENSMAMG00000010683	smg5	100	61.069	Mastacembelus_armatus
ENSSHAG00000014163	SMG5	100	62.295	ENSMZEG00005015815	smg5	98	63.153	Maylandia_zebra
ENSSHAG00000014163	SMG5	64	57.698	ENSMZEG00005016543	smg5	100	57.100	Maylandia_zebra
ENSSHAG00000014163	SMG5	100	85.600	ENSMAUG00000010381	Smg5	98	85.900	Mesocricetus_auratus
ENSSHAG00000014163	SMG5	100	89.489	ENSMICG00000002257	SMG5	98	89.089	Microcebus_murinus
ENSSHAG00000014163	SMG5	100	85.529	ENSMOCG00000016590	Smg5	98	85.230	Microtus_ochrogaster
ENSSHAG00000014163	SMG5	100	57.790	ENSMMOG00000017199	smg5	98	58.243	Mola_mola
ENSSHAG00000014163	SMG5	77	36.434	ENSMODG00000010675	-	85	37.209	Monodelphis_domestica
ENSSHAG00000014163	SMG5	87	97.572	ENSMODG00000016901	SMG5	96	97.572	Monodelphis_domestica
ENSSHAG00000014163	SMG5	79	38.992	ENSMODG00000004532	-	85	38.992	Monodelphis_domestica
ENSSHAG00000014163	SMG5	99	34.149	ENSMODG00000004511	-	99	34.086	Monodelphis_domestica
ENSSHAG00000014163	SMG5	79	38.601	ENSMODG00000004735	-	86	38.684	Monodelphis_domestica
ENSSHAG00000014163	SMG5	100	59.765	ENSMALG00000010375	smg5	98	59.892	Monopterus_albus
ENSSHAG00000014163	SMG5	100	85.700	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSSHAG00000014163	SMG5	100	85.900	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSSHAG00000014163	SMG5	100	85.415	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSSHAG00000014163	SMG5	100	85.700	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSSHAG00000014163	SMG5	96	85.893	ENSMPUG00000004546	SMG5	100	84.744	Mustela_putorius_furo
ENSSHAG00000014163	SMG5	100	87.351	ENSMLUG00000008518	SMG5	98	87.450	Myotis_lucifugus
ENSSHAG00000014163	SMG5	100	87.688	ENSNGAG00000020706	Smg5	98	87.688	Nannospalax_galili
ENSSHAG00000014163	SMG5	97	62.717	ENSNBRG00000004332	smg5	96	63.636	Neolamprologus_brichardi
ENSSHAG00000014163	SMG5	100	89.489	ENSNLEG00000012439	SMG5	98	89.089	Nomascus_leucogenys
ENSSHAG00000014163	SMG5	100	95.491	ENSMEUG00000012834	SMG5	98	95.491	Notamacropus_eugenii
ENSSHAG00000014163	SMG5	100	87.387	ENSOPRG00000009152	SMG5	98	86.987	Ochotona_princeps
ENSSHAG00000014163	SMG5	100	88.388	ENSODEG00000012237	SMG5	98	88.388	Octodon_degus
ENSSHAG00000014163	SMG5	100	59.821	ENSONIG00000008632	smg5	55	56.019	Oreochromis_niloticus
ENSSHAG00000014163	SMG5	90	40.573	ENSOCUG00000023338	-	97	40.463	Oryctolagus_cuniculus
ENSSHAG00000014163	SMG5	100	88.689	ENSOCUG00000012886	SMG5	100	88.288	Oryctolagus_cuniculus
ENSSHAG00000014163	SMG5	52	57.726	ENSORLG00000016239	smg5	98	61.426	Oryzias_latipes
ENSSHAG00000014163	SMG5	100	64.314	ENSORLG00020013127	smg5	98	65.010	Oryzias_latipes_hni
ENSSHAG00000014163	SMG5	100	64.519	ENSORLG00015019014	smg5	98	65.510	Oryzias_latipes_hsok
ENSSHAG00000014163	SMG5	81	58.977	ENSOMEG00000021330	smg5	90	59.846	Oryzias_melastigma
ENSSHAG00000014163	SMG5	100	88.288	ENSOGAG00000004966	SMG5	98	87.888	Otolemur_garnettii
ENSSHAG00000014163	SMG5	100	87.588	ENSOARG00000005778	SMG5	98	88.488	Ovis_aries
ENSSHAG00000014163	SMG5	99	43.886	ENSOARG00000011963	-	98	43.267	Ovis_aries
ENSSHAG00000014163	SMG5	100	89.690	ENSPPAG00000011996	SMG5	98	89.289	Pan_paniscus
ENSSHAG00000014163	SMG5	100	87.487	ENSPPRG00000011901	SMG5	100	86.887	Panthera_pardus
ENSSHAG00000014163	SMG5	99	81.440	ENSPTIG00000007892	SMG5	98	80.750	Panthera_tigris_altaica
ENSSHAG00000014163	SMG5	100	89.690	ENSPTRG00000049282	-	98	89.289	Pan_troglodytes
ENSSHAG00000014163	SMG5	100	89.690	ENSPTRG00000023925	SMG5	98	89.289	Pan_troglodytes
ENSSHAG00000014163	SMG5	100	89.590	ENSPANG00000011201	SMG5	98	89.189	Papio_anubis
ENSSHAG00000014163	SMG5	100	64.579	ENSPKIG00000009402	smg5	98	64.665	Paramormyrops_kingsleyae
ENSSHAG00000014163	SMG5	100	81.639	ENSPSIG00000015198	SMG5	100	81.441	Pelodiscus_sinensis
ENSSHAG00000014163	SMG5	100	59.777	ENSPMGG00000010465	smg5	98	59.477	Periophthalmus_magnuspinnatus
ENSSHAG00000014163	SMG5	56	46.018	ENSPEMG00000010022	-	94	46.018	Peromyscus_maniculatus_bairdii
ENSSHAG00000014163	SMG5	100	86.100	ENSPEMG00000001819	Smg5	98	86.400	Peromyscus_maniculatus_bairdii
ENSSHAG00000014163	SMG5	100	49.710	ENSPMAG00000000410	smg5	98	50.960	Petromyzon_marinus
ENSSHAG00000014163	SMG5	100	97.197	ENSPCIG00000018938	SMG5	98	97.197	Phascolarctos_cinereus
ENSSHAG00000014163	SMG5	52	59.783	ENSPFOG00000010191	smg5	98	60.763	Poecilia_formosa
ENSSHAG00000014163	SMG5	52	59.450	ENSPLAG00000009332	smg5	98	60.581	Poecilia_latipinna
ENSSHAG00000014163	SMG5	100	64.648	ENSPMEG00000014105	smg5	98	64.878	Poecilia_mexicana
ENSSHAG00000014163	SMG5	93	69.324	ENSPREG00000017713	smg5	98	60.672	Poecilia_reticulata
ENSSHAG00000014163	SMG5	100	89.790	ENSPPYG00000000723	SMG5	98	89.389	Pongo_abelii
ENSSHAG00000014163	SMG5	71	98.883	ENSPCAG00000008412	SMG5	75	98.883	Procavia_capensis
ENSSHAG00000014163	SMG5	100	88.989	ENSPCOG00000004741	SMG5	98	88.589	Propithecus_coquereli
ENSSHAG00000014163	SMG5	100	78.478	ENSPVAG00000016748	SMG5	98	79.880	Pteropus_vampyrus
ENSSHAG00000014163	SMG5	100	60.089	ENSPNYG00000013397	smg5	98	60.628	Pundamilia_nyererei
ENSSHAG00000014163	SMG5	100	61.694	ENSPNAG00000028363	smg5	98	62.072	Pygocentrus_nattereri
ENSSHAG00000014163	SMG5	100	85.900	ENSRNOG00000019590	Smg5	98	86.000	Rattus_norvegicus
ENSSHAG00000014163	SMG5	100	89.289	ENSRBIG00000027428	SMG5	98	88.889	Rhinopithecus_bieti
ENSSHAG00000014163	SMG5	100	89.189	ENSRROG00000030035	SMG5	98	88.789	Rhinopithecus_roxellana
ENSSHAG00000014163	SMG5	100	89.489	ENSSBOG00000033339	SMG5	98	89.089	Saimiri_boliviensis_boliviensis
ENSSHAG00000014163	SMG5	100	65.743	ENSSFOG00015024175	smg5	98	66.238	Scleropages_formosus
ENSSHAG00000014163	SMG5	100	60.306	ENSSMAG00000013059	smg5	98	60.306	Scophthalmus_maximus
ENSSHAG00000014163	SMG5	100	59.821	ENSSDUG00000007122	smg5	98	60.807	Seriola_dumerili
ENSSHAG00000014163	SMG5	95	61.003	ENSSLDG00000011418	smg5	95	62.062	Seriola_lalandi_dorsalis
ENSSHAG00000014163	SMG5	90	76.000	ENSSARG00000012484	SMG5	97	75.556	Sorex_araneus
ENSSHAG00000014163	SMG5	96	78.571	ENSSPUG00000002260	SMG5	100	78.169	Sphenodon_punctatus
ENSSHAG00000014163	SMG5	100	65.137	ENSSPAG00000014266	smg5	97	65.392	Stegastes_partitus
ENSSHAG00000014163	SMG5	99	69.208	ENSSSCG00000039308	-	97	69.609	Sus_scrofa
ENSSHAG00000014163	SMG5	51	38.281	ENSSSCG00000037182	-	82	38.281	Sus_scrofa
ENSSHAG00000014163	SMG5	100	89.590	ENSSSCG00000006490	-	100	88.715	Sus_scrofa
ENSSHAG00000014163	SMG5	100	81.312	ENSTGUG00000003748	-	98	81.312	Taeniopygia_guttata
ENSSHAG00000014163	SMG5	100	63.663	ENSTRUG00000012580	smg5	98	63.663	Takifugu_rubripes
ENSSHAG00000014163	SMG5	100	65.286	ENSTNIG00000010303	smg5	98	64.405	Tetraodon_nigroviridis
ENSSHAG00000014163	SMG5	59	99.015	ENSTBEG00000002777	SMG5	57	99.015	Tupaia_belangeri
ENSSHAG00000014163	SMG5	97	87.358	ENSTTRG00000001401	SMG5	94	86.943	Tursiops_truncatus
ENSSHAG00000014163	SMG5	100	87.187	ENSUAMG00000013721	SMG5	98	86.086	Ursus_americanus
ENSSHAG00000014163	SMG5	100	82.735	ENSUMAG00000018041	SMG5	97	81.637	Ursus_maritimus
ENSSHAG00000014163	SMG5	94	87.864	ENSVPAG00000009446	SMG5	99	79.860	Vicugna_pacos
ENSSHAG00000014163	SMG5	100	87.988	ENSVVUG00000005887	SMG5	98	87.387	Vulpes_vulpes
ENSSHAG00000014163	SMG5	79	65.875	ENSXETG00000033791	SMG5	99	64.560	Xenopus_tropicalis
ENSSHAG00000014163	SMG5	100	64.047	ENSXMAG00000013499	smg5	98	64.665	Xiphophorus_maculatus