EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000014616 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 48843 bases
Position: chrGL856730.1:1536139-1584981
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000017196	ResIII	PF04851.15	2.3e-12	1	1
ENSSHAP00000017196	DEAD	PF00270.29	3.1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000017339	-	2646	-	ENSSHAP00000017196	882 (aa)	-	G3WP41

Gene Model

Click here to download ENSSHAG00000014616's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000014616's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000014616	-	68	34.098	ENSSHAG00000000758	SNRNP200	55	34.872
ENSSHAG00000014616	-	66	35.945	ENSSHAG00000016496	ASCC3	52	35.945

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000014616	-	98	71.792	ENSG00000162669	HFM1	93	46.154	Homo_sapiens
ENSSHAG00000014616	-	66	69.573	ENSAPOG00000005304	hfm1	65	69.573	Acanthochromis_polyacanthus
ENSSHAG00000014616	-	98	71.940	ENSAMEG00000000432	HFM1	60	71.940	Ailuropoda_melanoleuca
ENSSHAG00000014616	-	67	69.426	ENSACIG00000021553	hfm1	54	69.426	Amphilophus_citrinellus
ENSSHAG00000014616	-	66	69.896	ENSAOCG00000022839	hfm1	69	69.896	Amphiprion_ocellaris
ENSSHAG00000014616	-	66	69.550	ENSAPEG00000014316	hfm1	70	69.550	Amphiprion_percula
ENSSHAG00000014616	-	98	62.073	ENSAPLG00000013639	HFM1	59	62.073	Anas_platyrhynchos
ENSSHAG00000014616	-	98	70.405	ENSANAG00000029513	HFM1	61	70.405	Aotus_nancymaae
ENSSHAG00000014616	-	72	62.975	ENSACLG00000009033	hfm1	71	62.975	Astatotilapia_calliptera
ENSSHAG00000014616	-	98	71.626	ENSBTAG00000020856	HFM1	60	71.626	Bos_taurus
ENSSHAG00000014616	-	98	71.280	ENSCJAG00000001843	HFM1	60	71.280	Callithrix_jacchus
ENSSHAG00000014616	-	98	72.055	ENSCAFG00000020187	HFM1	60	72.055	Canis_familiaris
ENSSHAG00000014616	-	53	61.311	ENSCAFG00020013595	-	99	61.311	Canis_lupus_dingo
ENSSHAG00000014616	-	50	57.823	ENSCHIG00000018623	-	92	57.823	Capra_hircus
ENSSHAG00000014616	-	98	71.594	ENSTSYG00000014250	HFM1	60	71.594	Carlito_syrichta
ENSSHAG00000014616	-	98	69.017	ENSCPOG00000007421	HFM1	61	69.017	Cavia_porcellus
ENSSHAG00000014616	-	98	71.412	ENSCCAG00000033206	HFM1	59	71.412	Cebus_capucinus
ENSSHAG00000014616	-	98	71.445	ENSCATG00000030987	HFM1	60	71.445	Cercocebus_atys
ENSSHAG00000014616	-	99	69.143	ENSCLAG00000005173	HFM1	58	69.143	Chinchilla_lanigera
ENSSHAG00000014616	-	65	54.054	ENSCSAVG00000005094	-	82	54.054	Ciona_savignyi
ENSSHAG00000014616	-	53	59.322	ENSCANG00000034052	-	98	59.322	Colobus_angolensis_palliatus
ENSSHAG00000014616	-	98	61.785	ENSCGRG00001016995	Hfm1	59	61.785	Cricetulus_griseus_chok1gshd
ENSSHAG00000014616	-	98	66.859	ENSCGRG00000017181	Hfm1	60	66.859	Cricetulus_griseus_crigri
ENSSHAG00000014616	-	67	67.568	ENSCSEG00000017659	hfm1	54	67.568	Cynoglossus_semilaevis
ENSSHAG00000014616	-	61	71.402	ENSCVAG00000005075	hfm1	65	71.402	Cyprinodon_variegatus
ENSSHAG00000014616	-	70	68.455	ENSDARG00000104288	hfm1	55	68.455	Danio_rerio
ENSSHAG00000014616	-	98	70.208	ENSDNOG00000004776	HFM1	58	70.208	Dasypus_novemcinctus
ENSSHAG00000014616	-	98	65.909	ENSDORG00000014661	Hfm1	60	65.909	Dipodomys_ordii
ENSSHAG00000014616	-	66	86.552	ENSEASG00005015424	HFM1	97	59.740	Equus_asinus_asinus
ENSSHAG00000014616	-	98	72.370	ENSECAG00000024039	HFM1	58	72.370	Equus_caballus
ENSSHAG00000014616	-	67	72.635	ENSELUG00000018944	hfm1	63	72.635	Esox_lucius
ENSSHAG00000014616	-	98	72.171	ENSFCAG00000029116	HFM1	60	72.171	Felis_catus
ENSSHAG00000014616	-	98	62.345	ENSFALG00000001781	HFM1	60	63.056	Ficedula_albicollis
ENSSHAG00000014616	-	98	70.379	ENSFDAG00000020816	HFM1	58	70.379	Fukomys_damarensis
ENSSHAG00000014616	-	67	68.750	ENSGMOG00000017436	hfm1	64	68.750	Gadus_morhua
ENSSHAG00000014616	-	67	71.622	ENSGAFG00000018093	hfm1	67	67.657	Gambusia_affinis
ENSSHAG00000014616	-	67	69.426	ENSGACG00000015686	hfm1	64	69.426	Gasterosteus_aculeatus
ENSSHAG00000014616	-	98	71.561	ENSGGOG00000038524	HFM1	60	71.561	Gorilla_gorilla
ENSSHAG00000014616	-	67	69.595	ENSHBUG00000007309	hfm1	56	69.595	Haplochromis_burtoni
ENSSHAG00000014616	-	53	58.898	ENSHGLG00000007780	-	99	58.898	Heterocephalus_glaber_female
ENSSHAG00000014616	-	53	57.983	ENSHGLG00100019217	-	99	57.983	Heterocephalus_glaber_male
ENSSHAG00000014616	-	67	65.541	ENSHCOG00000019632	hfm1	71	65.541	Hippocampus_comes
ENSSHAG00000014616	-	67	70.608	ENSIPUG00000017020	hfm1	65	66.887	Ictalurus_punctatus
ENSSHAG00000014616	-	53	57.294	ENSSTOG00000008477	-	99	57.294	Ictidomys_tridecemlineatus
ENSSHAG00000014616	-	98	68.512	ENSJJAG00000017198	Hfm1	61	68.512	Jaculus_jaculus
ENSSHAG00000014616	-	67	69.426	ENSKMAG00000002282	hfm1	60	69.426	Kryptolebias_marmoratus
ENSSHAG00000014616	-	67	69.257	ENSLBEG00000006759	hfm1	69	65.455	Labrus_bergylta
ENSSHAG00000014616	-	67	76.254	ENSLACG00000010698	HFM1	56	76.421	Latimeria_chalumnae
ENSSHAG00000014616	-	70	70.900	ENSLOCG00000004931	hfm1	57	70.900	Lepisosteus_oculatus
ENSSHAG00000014616	-	76	80.149	ENSLAFG00000015903	-	90	80.149	Loxodonta_africana
ENSSHAG00000014616	-	98	67.391	ENSMFAG00000003649	HFM1	60	67.391	Macaca_fascicularis
ENSSHAG00000014616	-	98	71.445	ENSMMUG00000006819	HFM1	60	71.445	Macaca_mulatta
ENSSHAG00000014616	-	53	59.236	ENSMNEG00000039833	-	98	59.236	Macaca_nemestrina
ENSSHAG00000014616	-	53	59.322	ENSMLEG00000027571	-	98	59.322	Mandrillus_leucophaeus
ENSSHAG00000014616	-	69	69.243	ENSMAMG00000004623	hfm1	72	65.581	Mastacembelus_armatus
ENSSHAG00000014616	-	72	62.975	ENSMZEG00005004679	hfm1	71	62.975	Maylandia_zebra
ENSSHAG00000014616	-	98	62.874	ENSMGAG00000008437	HFM1	96	62.874	Meleagris_gallopavo
ENSSHAG00000014616	-	98	68.092	ENSMAUG00000018858	Hfm1	59	68.092	Mesocricetus_auratus
ENSSHAG00000014616	-	98	70.323	ENSMICG00000037935	HFM1	60	70.323	Microcebus_murinus
ENSSHAG00000014616	-	98	66.243	ENSMOCG00000014812	Hfm1	59	66.358	Microtus_ochrogaster
ENSSHAG00000014616	-	67	67.905	ENSMMOG00000006148	hfm1	65	69.347	Mola_mola
ENSSHAG00000014616	-	69	69.180	ENSMALG00000002401	hfm1	67	67.568	Monopterus_albus
ENSSHAG00000014616	-	89	74.684	MGP_CAROLIEiJ_G0027496	Hfm1	96	51.151	Mus_caroli
ENSSHAG00000014616	-	98	67.514	ENSMUSG00000043410	Hfm1	99	53.606	Mus_musculus
ENSSHAG00000014616	-	98	67.667	MGP_PahariEiJ_G0017268	Hfm1	99	53.957	Mus_pahari
ENSSHAG00000014616	-	98	67.630	MGP_SPRETEiJ_G0028495	Hfm1	99	54.087	Mus_spretus
ENSSHAG00000014616	-	98	71.478	ENSMPUG00000004594	HFM1	58	71.478	Mustela_putorius_furo
ENSSHAG00000014616	-	98	71.824	ENSMLUG00000010200	HFM1	60	71.824	Myotis_lucifugus
ENSSHAG00000014616	-	67	67.736	ENSNBRG00000002910	hfm1	69	65.541	Neolamprologus_brichardi
ENSSHAG00000014616	-	98	69.364	ENSNLEG00000010285	HFM1	60	69.364	Nomascus_leucogenys
ENSSHAG00000014616	-	98	72.486	ENSMEUG00000015788	HFM1	59	72.486	Notamacropus_eugenii
ENSSHAG00000014616	-	53	58.051	ENSODEG00000006243	-	99	58.051	Octodon_degus
ENSSHAG00000014616	-	70	68.293	ENSONIG00000010590	hfm1	58	68.293	Oreochromis_niloticus
ENSSHAG00000014616	-	67	65.878	ENSORLG00000026844	hfm1	72	65.878	Oryzias_latipes
ENSSHAG00000014616	-	70	57.810	ENSORLG00020002951	hfm1	65	47.133	Oryzias_latipes_hni
ENSSHAG00000014616	-	98	69.827	ENSOGAG00000032369	HFM1	70	69.827	Otolemur_garnettii
ENSSHAG00000014616	-	98	72.203	ENSOARG00000015812	HFM1	60	72.203	Ovis_aries
ENSSHAG00000014616	-	98	72.023	ENSPPAG00000024582	HFM1	65	72.023	Pan_paniscus
ENSSHAG00000014616	-	98	72.286	ENSPPRG00000003270	HFM1	60	72.286	Panthera_pardus
ENSSHAG00000014616	-	98	72.171	ENSPTIG00000018881	HFM1	60	72.171	Panthera_tigris_altaica
ENSSHAG00000014616	-	98	72.023	ENSPTRG00000000948	HFM1	60	72.023	Pan_troglodytes
ENSSHAG00000014616	-	98	71.561	ENSPANG00000009838	HFM1	60	71.561	Papio_anubis
ENSSHAG00000014616	-	68	69.357	ENSPKIG00000003810	hfm1	69	68.212	Paramormyrops_kingsleyae
ENSSHAG00000014616	-	67	66.440	ENSPMGG00000011059	hfm1	71	66.440	Periophthalmus_magnuspinnatus
ENSSHAG00000014616	-	98	67.708	ENSPEMG00000022852	Hfm1	60	67.708	Peromyscus_maniculatus_bairdii
ENSSHAG00000014616	-	99	84.096	ENSPCIG00000014233	HFM1	58	84.954	Phascolarctos_cinereus
ENSSHAG00000014616	-	67	71.622	ENSPFOG00000017194	hfm1	56	71.622	Poecilia_formosa
ENSSHAG00000014616	-	67	71.791	ENSPLAG00000000571	hfm1	54	71.791	Poecilia_latipinna
ENSSHAG00000014616	-	67	71.791	ENSPMEG00000019475	hfm1	54	71.791	Poecilia_mexicana
ENSSHAG00000014616	-	69	69.458	ENSPREG00000007803	hfm1	66	69.608	Poecilia_reticulata
ENSSHAG00000014616	-	98	71.329	ENSPPYG00000001163	HFM1	60	71.329	Pongo_abelii
ENSSHAG00000014616	-	53	44.397	ENSPCOG00000026252	-	99	44.397	Propithecus_coquereli
ENSSHAG00000014616	-	98	66.127	ENSPVAG00000009713	HFM1	61	66.127	Pteropus_vampyrus
ENSSHAG00000014616	-	72	62.975	ENSPNYG00000001795	hfm1	71	62.975	Pundamilia_nyererei
ENSSHAG00000014616	-	69	66.612	ENSPNAG00000010865	hfm1	59	66.612	Pygocentrus_nattereri
ENSSHAG00000014616	-	98	67.514	ENSRNOG00000023299	Hfm1	60	67.514	Rattus_norvegicus
ENSSHAG00000014616	-	53	59.110	ENSRBIG00000033899	-	98	59.110	Rhinopithecus_bieti
ENSSHAG00000014616	-	98	71.329	ENSRROG00000045569	HFM1	60	71.329	Rhinopithecus_roxellana
ENSSHAG00000014616	-	98	71.214	ENSSBOG00000027456	HFM1	61	71.214	Saimiri_boliviensis_boliviensis
ENSSHAG00000014616	-	98	56.128	ENSSFOG00015020129	hfm1	56	56.128	Scleropages_formosus
ENSSHAG00000014616	-	69	67.921	ENSSMAG00000006907	hfm1	59	67.921	Scophthalmus_maximus
ENSSHAG00000014616	-	67	66.892	ENSSDUG00000011424	hfm1	66	66.892	Seriola_dumerili
ENSSHAG00000014616	-	67	66.948	ENSSLDG00000016386	hfm1	65	66.948	Seriola_lalandi_dorsalis
ENSSHAG00000014616	-	67	67.399	ENSSPAG00000001023	hfm1	66	67.399	Stegastes_partitus
ENSSHAG00000014616	-	97	71.545	ENSSSCG00000006912	HFM1	62	71.545	Sus_scrofa
ENSSHAG00000014616	-	67	81.113	ENSTGUG00000006172	HFM1	62	81.113	Taeniopygia_guttata
ENSSHAG00000014616	-	53	65.817	ENSTNIG00000006962	hfm1	96	65.817	Tetraodon_nigroviridis
ENSSHAG00000014616	-	98	70.439	ENSTTRG00000013933	HFM1	61	70.439	Tursiops_truncatus
ENSSHAG00000014616	-	52	52.700	ENSUAMG00000008754	-	96	52.700	Ursus_americanus
ENSSHAG00000014616	-	53	61.099	ENSUMAG00000001345	-	99	61.099	Ursus_maritimus
ENSSHAG00000014616	-	86	77.461	ENSVPAG00000011331	HFM1	52	77.461	Vicugna_pacos
ENSSHAG00000014616	-	66	85.862	ENSVVUG00000020760	HFM1	95	60.259	Vulpes_vulpes
ENSSHAG00000014616	-	69	67.987	ENSXMAG00000004178	hfm1	66	67.987	Xiphophorus_maculatus