EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000014739 (Gene tree)
Gene ID: 100918772
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 56992 bases
Position: chrGL834782.1:1564059-1621050
Accession: 17264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000017347	RNA_pol_Rpb1_5	PF04998.17	3.2e-93	1	1
ENSSHAP00000017347	RNA_pol_Rpb1_2	PF00623.20	3.2e-70	1	1
ENSSHAP00000017347	RNA_pol_Rpb1_3	PF04983.18	6.7e-34	1	1
ENSSHAP00000017347	RNA_pol_Rpb1_1	PF04997.12	3.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000017492	POLR1A-201	5172	-	ENSSHAP00000017347	1723 (aa)	-	G3WPJ2

Gene Model

Click here to download ENSSHAG00000014739's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000014739's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000014739	POLR1A	67	32.381	ENSSHAG00000002858	-	53	42.478
ENSSHAG00000014739	POLR1A	56	65.455	ENSSHAG00000007588	POLR3A	57	70.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000014739	POLR1A	100	72.962	ENSG00000068654	POLR1A	100	73.948	Homo_sapiens
ENSSHAG00000014739	POLR1A	69	60.815	ENSAPOG00000017945	polr1a	99	60.815	Acanthochromis_polyacanthus
ENSSHAG00000014739	POLR1A	100	73.903	ENSAMEG00000005807	POLR1A	100	74.516	Ailuropoda_melanoleuca
ENSSHAG00000014739	POLR1A	96	62.311	ENSACIG00000022147	polr1a	100	62.105	Amphilophus_citrinellus
ENSSHAG00000014739	POLR1A	100	61.313	ENSAOCG00000017336	polr1a	98	70.548	Amphiprion_ocellaris
ENSSHAG00000014739	POLR1A	93	70.548	ENSAPEG00000016105	polr1a	98	70.548	Amphiprion_percula
ENSSHAG00000014739	POLR1A	100	61.012	ENSATEG00000016773	polr1a	100	60.644	Anabas_testudineus
ENSSHAG00000014739	POLR1A	85	68.065	ENSAPLG00000013871	POLR1A	99	67.995	Anas_platyrhynchos
ENSSHAG00000014739	POLR1A	99	63.182	ENSACAG00000012141	POLR1A	99	62.665	Anolis_carolinensis
ENSSHAG00000014739	POLR1A	100	73.126	ENSANAG00000033927	POLR1A	100	73.183	Aotus_nancymaae
ENSSHAG00000014739	POLR1A	100	57.258	ENSACLG00000020541	polr1a	100	56.627	Astatotilapia_calliptera
ENSSHAG00000014739	POLR1A	100	73.961	ENSBTAG00000006481	POLR1A	100	73.961	Bos_taurus
ENSSHAG00000014739	POLR1A	99	36.237	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSSHAG00000014739	POLR1A	100	73.199	ENSCJAG00000019547	POLR1A	100	73.199	Callithrix_jacchus
ENSSHAG00000014739	POLR1A	100	73.599	ENSCAFG00000007613	POLR1A	100	73.426	Canis_familiaris
ENSSHAG00000014739	POLR1A	100	73.657	ENSCAFG00020014752	POLR1A	100	73.484	Canis_lupus_dingo
ENSSHAG00000014739	POLR1A	100	72.775	ENSCHIG00000018204	POLR1A	100	72.601	Capra_hircus
ENSSHAG00000014739	POLR1A	100	72.517	ENSTSYG00000002761	POLR1A	100	72.575	Carlito_syrichta
ENSSHAG00000014739	POLR1A	97	68.939	ENSCAPG00000010132	POLR1A	100	68.998	Cavia_aperea
ENSSHAG00000014739	POLR1A	100	72.874	ENSCPOG00000012350	POLR1A	100	72.999	Cavia_porcellus
ENSSHAG00000014739	POLR1A	100	73.199	ENSCCAG00000019839	POLR1A	100	73.199	Cebus_capucinus
ENSSHAG00000014739	POLR1A	100	73.192	ENSCATG00000029786	POLR1A	100	74.063	Cercocebus_atys
ENSSHAG00000014739	POLR1A	100	73.110	ENSCLAG00000005187	POLR1A	100	73.110	Chinchilla_lanigera
ENSSHAG00000014739	POLR1A	100	73.413	ENSCSAG00000016251	POLR1A	100	73.890	Chlorocebus_sabaeus
ENSSHAG00000014739	POLR1A	99	68.983	ENSCPBG00000001115	POLR1A	99	68.934	Chrysemys_picta_bellii
ENSSHAG00000014739	POLR1A	99	42.061	ENSCSAVG00000007184	-	99	42.149	Ciona_savignyi
ENSSHAG00000014739	POLR1A	100	70.855	ENSCANG00000031785	POLR1A	100	71.141	Colobus_angolensis_palliatus
ENSSHAG00000014739	POLR1A	96	78.425	ENSCGRG00001006651	Polr1a	100	78.425	Cricetulus_griseus_chok1gshd
ENSSHAG00000014739	POLR1A	59	69.574	ENSCGRG00000010834	Polr1a	100	69.864	Cricetulus_griseus_crigri
ENSSHAG00000014739	POLR1A	100	56.542	ENSCSEG00000020190	polr1a	100	56.582	Cynoglossus_semilaevis
ENSSHAG00000014739	POLR1A	100	59.206	ENSCVAG00000020941	polr1a	100	59.264	Cyprinodon_variegatus
ENSSHAG00000014739	POLR1A	100	61.543	ENSDARG00000098375	polr1a	100	61.073	Danio_rerio
ENSSHAG00000014739	POLR1A	100	69.723	ENSDNOG00000010829	POLR1A	100	69.666	Dasypus_novemcinctus
ENSSHAG00000014739	POLR1A	100	72.586	ENSDORG00000008298	Polr1a	100	72.586	Dipodomys_ordii
ENSSHAG00000014739	POLR1A	91	49.767	FBgn0019938	RpI1	99	38.320	Drosophila_melanogaster
ENSSHAG00000014739	POLR1A	72	93.750	ENSETEG00000000412	-	72	93.750	Echinops_telfairi
ENSSHAG00000014739	POLR1A	86	65.891	ENSEBUG00000005667	-	99	65.891	Eptatretus_burgeri
ENSSHAG00000014739	POLR1A	100	73.587	ENSEASG00005001625	POLR1A	100	73.575	Equus_asinus_asinus
ENSSHAG00000014739	POLR1A	100	73.760	ENSECAG00000010092	POLR1A	100	74.717	Equus_caballus
ENSSHAG00000014739	POLR1A	100	73.760	ENSECAG00000030510	-	100	74.717	Equus_caballus
ENSSHAG00000014739	POLR1A	100	73.760	ENSECAG00000036306	-	100	74.717	Equus_caballus
ENSSHAG00000014739	POLR1A	81	90.551	ENSEEUG00000000676	POLR1A	81	90.551	Erinaceus_europaeus
ENSSHAG00000014739	POLR1A	100	62.464	ENSELUG00000012769	polr1a	99	61.266	Esox_lucius
ENSSHAG00000014739	POLR1A	100	73.687	ENSFCAG00000008966	POLR1A	100	73.687	Felis_catus
ENSSHAG00000014739	POLR1A	99	66.064	ENSFALG00000010082	POLR1A	99	66.122	Ficedula_albicollis
ENSSHAG00000014739	POLR1A	100	73.518	ENSFDAG00000013726	POLR1A	100	73.518	Fukomys_damarensis
ENSSHAG00000014739	POLR1A	100	56.978	ENSFHEG00000005996	polr1a	100	56.864	Fundulus_heteroclitus
ENSSHAG00000014739	POLR1A	99	55.659	ENSGMOG00000002230	polr1a	99	55.286	Gadus_morhua
ENSSHAG00000014739	POLR1A	91	63.416	ENSGALG00000038160	-	99	63.735	Gallus_gallus
ENSSHAG00000014739	POLR1A	100	59.296	ENSGAFG00000015266	polr1a	100	59.002	Gambusia_affinis
ENSSHAG00000014739	POLR1A	100	59.112	ENSGACG00000018791	polr1a	100	59.851	Gasterosteus_aculeatus
ENSSHAG00000014739	POLR1A	90	68.782	ENSGAGG00000004984	-	99	68.431	Gopherus_agassizii
ENSSHAG00000014739	POLR1A	100	72.962	ENSGGOG00000001788	POLR1A	100	73.948	Gorilla_gorilla
ENSSHAG00000014739	POLR1A	86	62.135	ENSHBUG00000020021	polr1a	99	62.637	Haplochromis_burtoni
ENSSHAG00000014739	POLR1A	100	73.499	ENSHGLG00000006334	POLR1A	100	73.499	Heterocephalus_glaber_female
ENSSHAG00000014739	POLR1A	100	73.245	ENSHGLG00100006614	POLR1A	100	73.245	Heterocephalus_glaber_male
ENSSHAG00000014739	POLR1A	100	58.252	ENSHCOG00000003345	polr1a	100	57.994	Hippocampus_comes
ENSSHAG00000014739	POLR1A	100	61.534	ENSIPUG00000013174	polr1a	100	60.276	Ictalurus_punctatus
ENSSHAG00000014739	POLR1A	100	72.675	ENSSTOG00000012580	POLR1A	100	72.822	Ictidomys_tridecemlineatus
ENSSHAG00000014739	POLR1A	100	73.702	ENSJJAG00000013113	Polr1a	100	73.545	Jaculus_jaculus
ENSSHAG00000014739	POLR1A	100	60.507	ENSKMAG00000007399	polr1a	100	60.634	Kryptolebias_marmoratus
ENSSHAG00000014739	POLR1A	94	63.191	ENSLBEG00000015401	polr1a	99	62.404	Labrus_bergylta
ENSSHAG00000014739	POLR1A	53	72.668	ENSLACG00000003218	polr1a	99	72.668	Latimeria_chalumnae
ENSSHAG00000014739	POLR1A	100	64.951	ENSLOCG00000010881	polr1a	100	63.777	Lepisosteus_oculatus
ENSSHAG00000014739	POLR1A	100	73.830	ENSLAFG00000014948	POLR1A	100	73.860	Loxodonta_africana
ENSSHAG00000014739	POLR1A	100	72.842	ENSMFAG00000046097	POLR1A	100	74.006	Macaca_fascicularis
ENSSHAG00000014739	POLR1A	100	72.842	ENSMMUG00000015815	POLR1A	100	74.006	Macaca_mulatta
ENSSHAG00000014739	POLR1A	100	72.842	ENSMNEG00000043313	POLR1A	100	74.006	Macaca_nemestrina
ENSSHAG00000014739	POLR1A	100	73.307	ENSMLEG00000042428	POLR1A	100	73.718	Mandrillus_leucophaeus
ENSSHAG00000014739	POLR1A	100	60.436	ENSMAMG00000016565	polr1a	100	60.599	Mastacembelus_armatus
ENSSHAG00000014739	POLR1A	100	60.299	ENSMZEG00005004915	polr1a	100	60.276	Maylandia_zebra
ENSSHAG00000014739	POLR1A	99	64.430	ENSMGAG00000013111	POLR1A	99	64.430	Meleagris_gallopavo
ENSSHAG00000014739	POLR1A	92	73.220	ENSMAUG00000008497	Polr1a	100	73.409	Mesocricetus_auratus
ENSSHAG00000014739	POLR1A	100	73.890	ENSMICG00000000757	POLR1A	100	73.890	Microcebus_murinus
ENSSHAG00000014739	POLR1A	100	73.626	ENSMOCG00000000122	Polr1a	100	73.815	Microtus_ochrogaster
ENSSHAG00000014739	POLR1A	100	59.086	ENSMMOG00000010216	polr1a	100	59.306	Mola_mola
ENSSHAG00000014739	POLR1A	100	76.905	ENSMODG00000009335	POLR1A	100	76.410	Monodelphis_domestica
ENSSHAG00000014739	POLR1A	92	69.930	ENSMALG00000013363	polr1a	96	69.930	Monopterus_albus
ENSSHAG00000014739	POLR1A	100	72.701	MGP_CAROLIEiJ_G0028494	Polr1a	100	72.759	Mus_caroli
ENSSHAG00000014739	POLR1A	100	72.659	ENSMUSG00000049553	Polr1a	100	72.775	Mus_musculus
ENSSHAG00000014739	POLR1A	100	73.064	MGP_PahariEiJ_G0022230	Polr1a	100	73.064	Mus_pahari
ENSSHAG00000014739	POLR1A	100	71.160	MGP_SPRETEiJ_G0029499	Polr1a	100	72.014	Mus_spretus
ENSSHAG00000014739	POLR1A	100	73.472	ENSMPUG00000009135	POLR1A	100	73.441	Mustela_putorius_furo
ENSSHAG00000014739	POLR1A	100	73.387	ENSMLUG00000015723	POLR1A	100	73.172	Myotis_lucifugus
ENSSHAG00000014739	POLR1A	100	72.832	ENSNGAG00000017907	Polr1a	100	73.195	Nannospalax_galili
ENSSHAG00000014739	POLR1A	100	60.138	ENSNBRG00000000519	polr1a	100	60.276	Neolamprologus_brichardi
ENSSHAG00000014739	POLR1A	100	71.748	ENSNLEG00000002264	POLR1A	100	72.555	Nomascus_leucogenys
ENSSHAG00000014739	POLR1A	75	98.425	ENSMEUG00000011665	-	75	98.425	Notamacropus_eugenii
ENSSHAG00000014739	POLR1A	99	67.366	ENSOPRG00000008269	POLR1A	100	67.037	Ochotona_princeps
ENSSHAG00000014739	POLR1A	100	72.659	ENSODEG00000003542	POLR1A	100	72.659	Octodon_degus
ENSSHAG00000014739	POLR1A	100	60.425	ENSONIG00000015895	polr1a	100	60.482	Oreochromis_niloticus
ENSSHAG00000014739	POLR1A	100	72.219	ENSOCUG00000010138	POLR1A	100	73.660	Oryctolagus_cuniculus
ENSSHAG00000014739	POLR1A	100	60.276	ENSORLG00000008753	polr1a	99	59.908	Oryzias_latipes
ENSSHAG00000014739	POLR1A	100	58.902	ENSORLG00020020726	polr1a	99	58.813	Oryzias_latipes_hni
ENSSHAG00000014739	POLR1A	100	56.912	ENSORLG00015016071	polr1a	99	56.642	Oryzias_latipes_hsok
ENSSHAG00000014739	POLR1A	100	72.795	ENSOGAG00000004031	POLR1A	100	72.738	Otolemur_garnettii
ENSSHAG00000014739	POLR1A	100	73.690	ENSOARG00000020601	POLR1A	100	73.690	Ovis_aries
ENSSHAG00000014739	POLR1A	100	72.790	ENSPPAG00000042450	POLR1A	100	73.775	Pan_paniscus
ENSSHAG00000014739	POLR1A	100	73.860	ENSPPRG00000006702	POLR1A	100	73.860	Panthera_pardus
ENSSHAG00000014739	POLR1A	100	73.433	ENSPTIG00000018783	POLR1A	100	73.433	Panthera_tigris_altaica
ENSSHAG00000014739	POLR1A	100	73.948	ENSPTRG00000012147	POLR1A	100	73.948	Pan_troglodytes
ENSSHAG00000014739	POLR1A	100	73.134	ENSPANG00000025908	POLR1A	100	74.006	Papio_anubis
ENSSHAG00000014739	POLR1A	94	75.000	ENSPKIG00000005468	polr1a	99	75.000	Paramormyrops_kingsleyae
ENSSHAG00000014739	POLR1A	62	65.530	ENSPSIG00000009321	-	99	63.728	Pelodiscus_sinensis
ENSSHAG00000014739	POLR1A	54	62.378	ENSPMGG00000009718	polr1a	92	62.378	Periophthalmus_magnuspinnatus
ENSSHAG00000014739	POLR1A	100	73.237	ENSPEMG00000022224	Polr1a	100	72.785	Peromyscus_maniculatus_bairdii
ENSSHAG00000014739	POLR1A	95	83.636	ENSPCIG00000004222	POLR1A	99	82.121	Phascolarctos_cinereus
ENSSHAG00000014739	POLR1A	100	59.505	ENSPFOG00000005025	polr1a	100	59.505	Poecilia_formosa
ENSSHAG00000014739	POLR1A	100	59.609	ENSPLAG00000021389	polr1a	100	59.666	Poecilia_latipinna
ENSSHAG00000014739	POLR1A	100	57.184	ENSPMEG00000006463	polr1a	100	58.007	Poecilia_mexicana
ENSSHAG00000014739	POLR1A	100	59.724	ENSPREG00000002389	polr1a	100	59.724	Poecilia_reticulata
ENSSHAG00000014739	POLR1A	100	73.145	ENSPPYG00000012217	POLR1A	100	73.314	Pongo_abelii
ENSSHAG00000014739	POLR1A	87	73.893	ENSPCAG00000011582	POLR1A	87	73.893	Procavia_capensis
ENSSHAG00000014739	POLR1A	100	73.906	ENSPCOG00000026987	POLR1A	100	73.963	Propithecus_coquereli
ENSSHAG00000014739	POLR1A	95	73.622	ENSPVAG00000012674	POLR1A	95	73.622	Pteropus_vampyrus
ENSSHAG00000014739	POLR1A	100	60.299	ENSPNYG00000000026	polr1a	100	60.276	Pundamilia_nyererei
ENSSHAG00000014739	POLR1A	100	62.536	ENSPNAG00000019223	polr1a	99	63.463	Pygocentrus_nattereri
ENSSHAG00000014739	POLR1A	100	73.121	ENSRNOG00000009545	Polr1a	100	73.337	Rattus_norvegicus
ENSSHAG00000014739	POLR1A	100	72.270	ENSRBIG00000028335	POLR1A	100	73.487	Rhinopithecus_bieti
ENSSHAG00000014739	POLR1A	100	72.213	ENSRROG00000031473	POLR1A	100	73.429	Rhinopithecus_roxellana
ENSSHAG00000014739	POLR1A	99	33.895	YOR341W	RPA190	99	33.668	Saccharomyces_cerevisiae
ENSSHAG00000014739	POLR1A	100	73.356	ENSSBOG00000030262	POLR1A	100	72.596	Saimiri_boliviensis_boliviensis
ENSSHAG00000014739	POLR1A	100	63.116	ENSSFOG00015019716	polr1a	100	62.623	Scleropages_formosus
ENSSHAG00000014739	POLR1A	100	60.321	ENSSMAG00000014342	polr1a	100	60.080	Scophthalmus_maximus
ENSSHAG00000014739	POLR1A	100	61.370	ENSSDUG00000014631	polr1a	100	61.370	Seriola_dumerili
ENSSHAG00000014739	POLR1A	100	60.023	ENSSLDG00000024095	polr1a	100	61.931	Seriola_lalandi_dorsalis
ENSSHAG00000014739	POLR1A	70	100.000	ENSSARG00000003136	-	70	100.000	Sorex_araneus
ENSSHAG00000014739	POLR1A	92	81.538	ENSSPUG00000004215	POLR1A	98	81.538	Sphenodon_punctatus
ENSSHAG00000014739	POLR1A	59	68.750	ENSSPAG00000016341	polr1a	96	62.641	Stegastes_partitus
ENSSHAG00000014739	POLR1A	83	72.759	ENSSSCG00000008226	POLR1A	99	72.549	Sus_scrofa
ENSSHAG00000014739	POLR1A	99	65.731	ENSTGUG00000010704	POLR1A	100	65.598	Taeniopygia_guttata
ENSSHAG00000014739	POLR1A	100	59.804	ENSTRUG00000002210	polr1a	99	59.240	Takifugu_rubripes
ENSSHAG00000014739	POLR1A	100	55.352	ENSTNIG00000010116	polr1a	100	55.238	Tetraodon_nigroviridis
ENSSHAG00000014739	POLR1A	70	100.000	ENSTBEG00000008646	POLR1A	70	100.000	Tupaia_belangeri
ENSSHAG00000014739	POLR1A	100	71.214	ENSTTRG00000008597	POLR1A	100	71.214	Tursiops_truncatus
ENSSHAG00000014739	POLR1A	68	73.412	ENSUAMG00000012158	-	94	73.412	Ursus_americanus
ENSSHAG00000014739	POLR1A	100	73.237	ENSUMAG00000006700	POLR1A	100	73.064	Ursus_maritimus
ENSSHAG00000014739	POLR1A	100	73.599	ENSVVUG00000001245	POLR1A	100	73.368	Vulpes_vulpes
ENSSHAG00000014739	POLR1A	100	64.790	ENSXETG00000001952	polr1a	100	64.135	Xenopus_tropicalis
ENSSHAG00000014739	POLR1A	100	59.677	ENSXMAG00000004032	polr1a	100	59.336	Xiphophorus_maculatus