EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000015025 (Gene tree)
Gene ID: 100929320
Gene Symbol: ZIC1
Alias: ZIC|ZNF201
Full Name: Zic family member 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 3973 bases
Position: chrGL849906.1:1661999-1665971
Accession: 100929320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000017693	zf-C2H2	PF00096.26	1e-20	1	3
ENSSHAP00000017693	zf-C2H2	PF00096.26	1e-20	2	3
ENSSHAP00000017693	zf-C2H2	PF00096.26	1e-20	3	3
ENSSHAP00000017693	zf-met	PF12874.7	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000017839	ZIC1-201	1005	XM_003766103	ENSSHAP00000017693	334 (aa)	XP_003766151	G3WQI8

Gene Model

Click here to download ENSSHAG00000015025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000015025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000015025	ZIC1	61	41.284	ENSSHAG00000003284	-	73	42.222
ENSSHAG00000015025	ZIC1	51	38.235	ENSSHAG00000014216	-	61	43.636

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000015025	ZIC1	100	96.133	ENSG00000152977	ZIC1	89	95.868	Homo_sapiens
ENSSHAG00000015025	ZIC1	65	87.079	ENSACIG00000018732	zic1	58	89.286	Amphilophus_citrinellus
ENSSHAG00000015025	ZIC1	98	73.057	ENSEBUG00000002180	zic1	70	72.680	Eptatretus_burgeri
ENSSHAG00000015025	ZIC1	98	73.057	ENSEBUG00000006709	zic1	70	72.680	Eptatretus_burgeri
ENSSHAG00000015025	ZIC1	54	95.028	ENSFDAG00000013872	ZIC1	65	96.067	Fukomys_damarensis
ENSSHAG00000015025	ZIC1	100	92.697	ENSKMAG00000011689	zic1	75	92.697	Kryptolebias_marmoratus
ENSSHAG00000015025	ZIC1	78	88.202	ENSORLG00020012199	zic1	63	89.326	Oryzias_latipes_hni