EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000015189 (Gene tree)
Gene ID: 100931083
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 12045 bases
Position: chrGL834464.1:1716581-1728625
Accession: 100931083
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000017893	SMN	PF06003.12	5.4e-17	1	1
ENSSHAP00000017892	SMN	PF06003.12	5.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000018041	SMNDC1-202	1249	-	ENSSHAP00000017893	238 (aa)	XP_003755438	G3WR38
ENSSHAT00000018040	SMNDC1-201	1440	-	ENSSHAP00000017892	199 (aa)	XP_012396746	G3WR37

Gene Model

Click here to download ENSSHAG00000015189's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000015189's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000015189	SMNDC1	100	99.580	ENSG00000119953	SMNDC1	100	99.580	Homo_sapiens
ENSSHAG00000015189	SMNDC1	100	75.210	ENSAPOG00000021772	smndc1	100	75.210	Acanthochromis_polyacanthus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSAMEG00000005251	SMNDC1	100	99.160	Ailuropoda_melanoleuca
ENSSHAG00000015189	SMNDC1	100	76.050	ENSACIG00000004819	smndc1	100	76.050	Amphilophus_citrinellus
ENSSHAG00000015189	SMNDC1	100	75.210	ENSAOCG00000017869	smndc1	100	75.210	Amphiprion_ocellaris
ENSSHAG00000015189	SMNDC1	100	75.210	ENSAPEG00000007752	smndc1	100	75.210	Amphiprion_percula
ENSSHAG00000015189	SMNDC1	100	76.471	ENSATEG00000006830	smndc1	100	76.471	Anabas_testudineus
ENSSHAG00000015189	SMNDC1	99	96.465	ENSAPLG00000004322	SMNDC1	100	96.465	Anas_platyrhynchos
ENSSHAG00000015189	SMNDC1	100	95.378	ENSACAG00000005983	SMNDC1	100	95.378	Anolis_carolinensis
ENSSHAG00000015189	SMNDC1	100	99.160	ENSANAG00000032875	SMNDC1	100	99.160	Aotus_nancymaae
ENSSHAG00000015189	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSSHAG00000015189	SMNDC1	100	76.891	ENSAMXG00000020310	smndc1	100	76.891	Astyanax_mexicanus
ENSSHAG00000015189	SMNDC1	100	98.739	ENSBTAG00000000551	SMNDC1	100	98.739	Bos_taurus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSCJAG00000018624	SMNDC1	100	99.160	Callithrix_jacchus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSCAFG00000010720	SMNDC1	100	99.160	Canis_familiaris
ENSSHAG00000015189	SMNDC1	100	99.160	ENSCAFG00020011913	SMNDC1	100	99.160	Canis_lupus_dingo
ENSSHAG00000015189	SMNDC1	100	98.739	ENSCHIG00000010604	SMNDC1	100	98.739	Capra_hircus
ENSSHAG00000015189	SMNDC1	100	99.580	ENSTSYG00000026454	SMNDC1	100	99.580	Carlito_syrichta
ENSSHAG00000015189	SMNDC1	84	98.010	ENSCAPG00000009132	SMNDC1	100	98.010	Cavia_aperea
ENSSHAG00000015189	SMNDC1	100	98.319	ENSCPOG00000031666	SMNDC1	100	98.319	Cavia_porcellus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSCCAG00000021793	SMNDC1	100	99.160	Cebus_capucinus
ENSSHAG00000015189	SMNDC1	100	98.739	ENSCATG00000035910	SMNDC1	100	98.739	Cercocebus_atys
ENSSHAG00000015189	SMNDC1	100	98.319	ENSCLAG00000002838	SMNDC1	100	98.319	Chinchilla_lanigera
ENSSHAG00000015189	SMNDC1	100	99.160	ENSCSAG00000005169	SMNDC1	100	99.160	Chlorocebus_sabaeus
ENSSHAG00000015189	SMNDC1	81	98.446	ENSCHOG00000002936	SMNDC1	100	98.446	Choloepus_hoffmanni
ENSSHAG00000015189	SMNDC1	100	97.899	ENSCPBG00000012837	SMNDC1	100	97.899	Chrysemys_picta_bellii
ENSSHAG00000015189	SMNDC1	100	78.151	ENSCANG00000036994	-	100	78.151	Colobus_angolensis_palliatus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSCANG00000031720	-	100	99.160	Colobus_angolensis_palliatus
ENSSHAG00000015189	SMNDC1	100	91.597	ENSCANG00000034620	-	100	91.597	Colobus_angolensis_palliatus
ENSSHAG00000015189	SMNDC1	100	98.319	ENSCGRG00001012973	Smndc1	100	98.319	Cricetulus_griseus_chok1gshd
ENSSHAG00000015189	SMNDC1	100	98.319	ENSCGRG00000012396	Smndc1	100	98.319	Cricetulus_griseus_crigri
ENSSHAG00000015189	SMNDC1	100	76.050	ENSCSEG00000015621	smndc1	100	76.050	Cynoglossus_semilaevis
ENSSHAG00000015189	SMNDC1	100	76.891	ENSCVAG00000020432	smndc1	100	76.891	Cyprinodon_variegatus
ENSSHAG00000015189	SMNDC1	100	78.992	ENSDARG00000056235	smndc1	100	78.992	Danio_rerio
ENSSHAG00000015189	SMNDC1	100	99.160	ENSDNOG00000016387	SMNDC1	83	99.160	Dasypus_novemcinctus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSDORG00000023715	Smndc1	100	99.160	Dipodomys_ordii
ENSSHAG00000015189	SMNDC1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSSHAG00000015189	SMNDC1	100	70.954	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSSHAG00000015189	SMNDC1	100	99.160	ENSEASG00005014930	SMNDC1	100	99.160	Equus_asinus_asinus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSECAG00000029973	SMNDC1	100	99.160	Equus_caballus
ENSSHAG00000015189	SMNDC1	99	69.697	ENSEEUG00000013407	-	100	69.697	Erinaceus_europaeus
ENSSHAG00000015189	SMNDC1	100	78.571	ENSELUG00000000227	smndc1	100	78.571	Esox_lucius
ENSSHAG00000015189	SMNDC1	100	99.160	ENSFCAG00000027353	SMNDC1	100	99.160	Felis_catus
ENSSHAG00000015189	SMNDC1	100	96.218	ENSFALG00000002306	SMNDC1	100	96.218	Ficedula_albicollis
ENSSHAG00000015189	SMNDC1	100	98.739	ENSFDAG00000006468	SMNDC1	100	98.739	Fukomys_damarensis
ENSSHAG00000015189	SMNDC1	100	76.471	ENSFHEG00000020150	smndc1	100	76.471	Fundulus_heteroclitus
ENSSHAG00000015189	SMNDC1	100	77.311	ENSGMOG00000016585	smndc1	100	77.311	Gadus_morhua
ENSSHAG00000015189	SMNDC1	100	96.218	ENSGALG00000008561	SMNDC1	100	96.218	Gallus_gallus
ENSSHAG00000015189	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSSHAG00000015189	SMNDC1	100	76.050	ENSGACG00000009468	smndc1	100	76.050	Gasterosteus_aculeatus
ENSSHAG00000015189	SMNDC1	100	97.899	ENSGAGG00000024547	SMNDC1	100	97.899	Gopherus_agassizii
ENSSHAG00000015189	SMNDC1	100	99.160	ENSGGOG00000010071	SMNDC1	100	99.160	Gorilla_gorilla
ENSSHAG00000015189	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSSHAG00000015189	SMNDC1	100	98.739	ENSHGLG00000013390	-	100	98.739	Heterocephalus_glaber_female
ENSSHAG00000015189	SMNDC1	100	68.033	ENSHGLG00000001157	-	100	64.898	Heterocephalus_glaber_female
ENSSHAG00000015189	SMNDC1	100	76.230	ENSHGLG00100004278	-	100	75.820	Heterocephalus_glaber_male
ENSSHAG00000015189	SMNDC1	100	98.739	ENSHGLG00100004814	-	100	98.739	Heterocephalus_glaber_male
ENSSHAG00000015189	SMNDC1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSSHAG00000015189	SMNDC1	100	78.151	ENSIPUG00000004217	smndc1	100	78.151	Ictalurus_punctatus
ENSSHAG00000015189	SMNDC1	100	99.580	ENSSTOG00000006088	SMNDC1	100	99.580	Ictidomys_tridecemlineatus
ENSSHAG00000015189	SMNDC1	100	98.319	ENSJJAG00000019974	Smndc1	100	98.319	Jaculus_jaculus
ENSSHAG00000015189	SMNDC1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSSHAG00000015189	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSSHAG00000015189	SMNDC1	100	84.454	ENSLACG00000007784	SMNDC1	100	84.454	Latimeria_chalumnae
ENSSHAG00000015189	SMNDC1	100	84.454	ENSLOCG00000012355	smndc1	100	84.454	Lepisosteus_oculatus
ENSSHAG00000015189	SMNDC1	100	98.739	ENSLAFG00000014353	SMNDC1	100	98.739	Loxodonta_africana
ENSSHAG00000015189	SMNDC1	100	81.092	ENSMFAG00000038381	-	100	81.092	Macaca_fascicularis
ENSSHAG00000015189	SMNDC1	100	99.160	ENSMFAG00000002433	-	100	99.160	Macaca_fascicularis
ENSSHAG00000015189	SMNDC1	100	81.092	ENSMMUG00000045875	-	100	81.092	Macaca_mulatta
ENSSHAG00000015189	SMNDC1	100	99.160	ENSMMUG00000007775	SMNDC1	100	99.160	Macaca_mulatta
ENSSHAG00000015189	SMNDC1	100	99.160	ENSMNEG00000042963	-	100	99.160	Macaca_nemestrina
ENSSHAG00000015189	SMNDC1	100	87.815	ENSMNEG00000033853	-	100	87.815	Macaca_nemestrina
ENSSHAG00000015189	SMNDC1	100	92.887	ENSMLEG00000040236	SMNDC1	100	92.469	Mandrillus_leucophaeus
ENSSHAG00000015189	SMNDC1	89	73.709	ENSMAMG00000018233	smndc1	87	73.709	Mastacembelus_armatus
ENSSHAG00000015189	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSSHAG00000015189	SMNDC1	99	95.960	ENSMGAG00000010777	SMNDC1	84	96.000	Meleagris_gallopavo
ENSSHAG00000015189	SMNDC1	100	99.160	ENSMAUG00000012243	-	100	99.160	Mesocricetus_auratus
ENSSHAG00000015189	SMNDC1	99	79.747	ENSMAUG00000005459	-	93	79.747	Mesocricetus_auratus
ENSSHAG00000015189	SMNDC1	100	98.319	ENSMICG00000027336	-	100	98.319	Microcebus_murinus
ENSSHAG00000015189	SMNDC1	100	86.134	ENSMICG00000031640	-	100	86.134	Microcebus_murinus
ENSSHAG00000015189	SMNDC1	100	98.739	ENSMOCG00000002458	Smndc1	100	98.739	Microtus_ochrogaster
ENSSHAG00000015189	SMNDC1	100	76.471	ENSMMOG00000008856	smndc1	100	76.471	Mola_mola
ENSSHAG00000015189	SMNDC1	100	100.000	ENSMODG00000010542	SMNDC1	100	100.000	Monodelphis_domestica
ENSSHAG00000015189	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSSHAG00000015189	SMNDC1	100	98.739	MGP_CAROLIEiJ_G0023072	Smndc1	100	98.739	Mus_caroli
ENSSHAG00000015189	SMNDC1	100	99.160	ENSMUSG00000025024	Smndc1	100	99.160	Mus_musculus
ENSSHAG00000015189	SMNDC1	100	99.580	MGP_PahariEiJ_G0014560	Smndc1	100	99.580	Mus_pahari
ENSSHAG00000015189	SMNDC1	100	99.160	MGP_SPRETEiJ_G0023993	Smndc1	100	99.160	Mus_spretus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSMPUG00000002089	SMNDC1	100	99.160	Mustela_putorius_furo
ENSSHAG00000015189	SMNDC1	100	98.739	ENSMLUG00000016007	SMNDC1	100	98.739	Myotis_lucifugus
ENSSHAG00000015189	SMNDC1	100	98.739	ENSNGAG00000006833	Smndc1	100	98.739	Nannospalax_galili
ENSSHAG00000015189	SMNDC1	100	76.050	ENSNBRG00000017089	smndc1	100	76.050	Neolamprologus_brichardi
ENSSHAG00000015189	SMNDC1	100	99.160	ENSNLEG00000015471	SMNDC1	100	99.160	Nomascus_leucogenys
ENSSHAG00000015189	SMNDC1	98	58.500	ENSMEUG00000010120	-	99	59.000	Notamacropus_eugenii
ENSSHAG00000015189	SMNDC1	100	98.319	ENSOPRG00000015348	SMNDC1	100	98.319	Ochotona_princeps
ENSSHAG00000015189	SMNDC1	99	73.737	ENSODEG00000007594	-	100	66.807	Octodon_degus
ENSSHAG00000015189	SMNDC1	100	76.050	ENSONIG00000000434	smndc1	100	76.050	Oreochromis_niloticus
ENSSHAG00000015189	SMNDC1	100	98.739	ENSOANG00000001598	SMNDC1	100	98.739	Ornithorhynchus_anatinus
ENSSHAG00000015189	SMNDC1	100	74.790	ENSOCUG00000012274	-	100	76.471	Oryctolagus_cuniculus
ENSSHAG00000015189	SMNDC1	100	98.319	ENSOCUG00000008145	-	100	98.319	Oryctolagus_cuniculus
ENSSHAG00000015189	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSSHAG00000015189	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSSHAG00000015189	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSSHAG00000015189	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSSHAG00000015189	SMNDC1	100	98.739	ENSOGAG00000000571	SMNDC1	100	98.739	Otolemur_garnettii
ENSSHAG00000015189	SMNDC1	100	98.739	ENSOARG00000009500	SMNDC1	100	98.739	Ovis_aries
ENSSHAG00000015189	SMNDC1	100	99.160	ENSPPAG00000027815	SMNDC1	100	99.160	Pan_paniscus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSPPRG00000013749	SMNDC1	100	99.160	Panthera_pardus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSPTIG00000011451	SMNDC1	100	99.160	Panthera_tigris_altaica
ENSSHAG00000015189	SMNDC1	100	99.160	ENSPTRG00000002937	SMNDC1	100	99.160	Pan_troglodytes
ENSSHAG00000015189	SMNDC1	100	93.277	ENSPANG00000031346	-	100	93.277	Papio_anubis
ENSSHAG00000015189	SMNDC1	100	99.160	ENSPANG00000020805	-	100	99.160	Papio_anubis
ENSSHAG00000015189	SMNDC1	100	80.672	ENSPKIG00000017164	smndc1	100	80.672	Paramormyrops_kingsleyae
ENSSHAG00000015189	SMNDC1	100	98.319	ENSPSIG00000012257	SMNDC1	100	98.319	Pelodiscus_sinensis
ENSSHAG00000015189	SMNDC1	100	73.950	ENSPMGG00000015651	smndc1	100	73.950	Periophthalmus_magnuspinnatus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSPEMG00000022058	Smndc1	100	99.160	Peromyscus_maniculatus_bairdii
ENSSHAG00000015189	SMNDC1	100	67.623	ENSPMAG00000007705	smndc1	100	68.033	Petromyzon_marinus
ENSSHAG00000015189	SMNDC1	97	62.609	ENSPCIG00000009693	-	100	62.609	Phascolarctos_cinereus
ENSSHAG00000015189	SMNDC1	100	100.000	ENSPCIG00000018419	SMNDC1	100	100.000	Phascolarctos_cinereus
ENSSHAG00000015189	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSSHAG00000015189	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSSHAG00000015189	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSSHAG00000015189	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSSHAG00000015189	SMNDC1	100	99.160	ENSPPYG00000002643	SMNDC1	100	99.160	Pongo_abelii
ENSSHAG00000015189	SMNDC1	81	98.446	ENSPCAG00000016183	SMNDC1	100	98.446	Procavia_capensis
ENSSHAG00000015189	SMNDC1	100	98.739	ENSPCOG00000024343	SMNDC1	100	98.739	Propithecus_coquereli
ENSSHAG00000015189	SMNDC1	100	76.050	ENSPVAG00000004368	SMNDC1	100	76.050	Pteropus_vampyrus
ENSSHAG00000015189	SMNDC1	100	75.879	ENSPNYG00000024093	smndc1	98	70.222	Pundamilia_nyererei
ENSSHAG00000015189	SMNDC1	100	77.311	ENSPNAG00000025285	smndc1	100	77.311	Pygocentrus_nattereri
ENSSHAG00000015189	SMNDC1	100	98.739	ENSRNOG00000014833	Smndc1	100	98.739	Rattus_norvegicus
ENSSHAG00000015189	SMNDC1	100	82.773	ENSRBIG00000032452	-	100	82.773	Rhinopithecus_bieti
ENSSHAG00000015189	SMNDC1	100	98.739	ENSRBIG00000000224	-	100	98.739	Rhinopithecus_bieti
ENSSHAG00000015189	SMNDC1	100	83.193	ENSRROG00000039125	-	100	83.193	Rhinopithecus_roxellana
ENSSHAG00000015189	SMNDC1	100	99.160	ENSRROG00000044992	-	100	99.160	Rhinopithecus_roxellana
ENSSHAG00000015189	SMNDC1	100	99.160	ENSSBOG00000026789	SMNDC1	100	99.160	Saimiri_boliviensis_boliviensis
ENSSHAG00000015189	SMNDC1	100	80.672	ENSSFOG00015008311	smndc1	100	80.672	Scleropages_formosus
ENSSHAG00000015189	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSSHAG00000015189	SMNDC1	100	76.891	ENSSDUG00000015330	smndc1	100	76.891	Seriola_dumerili
ENSSHAG00000015189	SMNDC1	100	76.891	ENSSLDG00000017325	smndc1	100	76.891	Seriola_lalandi_dorsalis
ENSSHAG00000015189	SMNDC1	100	98.319	ENSSARG00000006063	SMNDC1	100	98.319	Sorex_araneus
ENSSHAG00000015189	SMNDC1	100	96.639	ENSSPUG00000004574	SMNDC1	100	96.639	Sphenodon_punctatus
ENSSHAG00000015189	SMNDC1	100	74.790	ENSSPAG00000000338	smndc1	100	74.790	Stegastes_partitus
ENSSHAG00000015189	SMNDC1	100	98.739	ENSSSCG00000030507	SMNDC1	100	98.739	Sus_scrofa
ENSSHAG00000015189	SMNDC1	100	96.218	ENSTGUG00000010599	SMNDC1	100	96.218	Taeniopygia_guttata
ENSSHAG00000015189	SMNDC1	100	74.370	ENSTRUG00000023281	smndc1	100	74.370	Takifugu_rubripes
ENSSHAG00000015189	SMNDC1	100	75.210	ENSTNIG00000013331	smndc1	100	75.210	Tetraodon_nigroviridis
ENSSHAG00000015189	SMNDC1	100	98.739	ENSTBEG00000014337	SMNDC1	100	98.739	Tupaia_belangeri
ENSSHAG00000015189	SMNDC1	100	99.160	ENSUAMG00000008142	SMNDC1	100	99.160	Ursus_americanus
ENSSHAG00000015189	SMNDC1	100	99.160	ENSUMAG00000023722	SMNDC1	100	99.160	Ursus_maritimus
ENSSHAG00000015189	SMNDC1	99	99.495	ENSVPAG00000003402	SMNDC1	100	99.495	Vicugna_pacos
ENSSHAG00000015189	SMNDC1	100	99.160	ENSVVUG00000007820	SMNDC1	100	99.160	Vulpes_vulpes
ENSSHAG00000015189	SMNDC1	60	83.099	ENSXETG00000015415	SMNDC1	100	83.099	Xenopus_tropicalis
ENSSHAG00000015189	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSSHAG00000015189	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus