EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000015359 (Gene tree)
Gene ID: 100930982
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 389622 bases
Position: chrGL861653.1:1766195-2155816
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000018091	TUDOR	PF00567.24	5e-28	1	1
ENSSHAP00000018091	SNase	PF00565.17	2.9e-66	1	5
ENSSHAP00000018091	SNase	PF00565.17	2.9e-66	2	5
ENSSHAP00000018091	SNase	PF00565.17	2.9e-66	3	5
ENSSHAP00000018091	SNase	PF00565.17	2.9e-66	4	5
ENSSHAP00000018091	SNase	PF00565.17	2.9e-66	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000018240	SND1-201	2667	-	ENSSHAP00000018091	888 (aa)	-	G3WRN6

Gene Model

Click here to download ENSSHAG00000015359's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000015359's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000015359	SND1	100	92.793	ENSG00000197157	SND1	98	92.793	Homo_sapiens
ENSSHAG00000015359	SND1	100	81.461	ENSAPOG00000017599	snd1	98	81.461	Acanthochromis_polyacanthus
ENSSHAG00000015359	SND1	100	92.809	ENSAMEG00000004664	SND1	92	92.809	Ailuropoda_melanoleuca
ENSSHAG00000015359	SND1	100	78.515	ENSACIG00000003551	snd1	98	78.515	Amphilophus_citrinellus
ENSSHAG00000015359	SND1	100	81.236	ENSAOCG00000014166	snd1	98	81.236	Amphiprion_ocellaris
ENSSHAG00000015359	SND1	100	81.236	ENSAPEG00000007067	snd1	98	81.236	Amphiprion_percula
ENSSHAG00000015359	SND1	98	80.641	ENSATEG00000018475	snd1	87	80.641	Anabas_testudineus
ENSSHAG00000015359	SND1	100	92.905	ENSANAG00000034463	SND1	99	93.326	Aotus_nancymaae
ENSSHAG00000015359	SND1	100	81.124	ENSACLG00000022897	snd1	98	81.124	Astatotilapia_calliptera
ENSSHAG00000015359	SND1	100	81.250	ENSAMXG00000016318	snd1	98	81.250	Astyanax_mexicanus
ENSSHAG00000015359	SND1	100	92.905	ENSBTAG00000010692	SND1	98	92.905	Bos_taurus
ENSSHAG00000015359	SND1	99	45.293	WBGene00006626	tsn-1	97	45.736	Caenorhabditis_elegans
ENSSHAG00000015359	SND1	100	92.905	ENSCJAG00000017668	SND1	99	93.326	Callithrix_jacchus
ENSSHAG00000015359	SND1	100	93.018	ENSCAFG00000001700	SND1	98	93.018	Canis_familiaris
ENSSHAG00000015359	SND1	100	93.018	ENSCAFG00020021639	SND1	98	93.018	Canis_lupus_dingo
ENSSHAG00000015359	SND1	100	93.131	ENSCHIG00000023390	SND1	98	93.552	Capra_hircus
ENSSHAG00000015359	SND1	75	91.373	ENSTSYG00000004979	SND1	96	91.373	Carlito_syrichta
ENSSHAG00000015359	SND1	99	80.834	ENSCAPG00000010677	SND1	98	80.834	Cavia_aperea
ENSSHAG00000015359	SND1	100	92.342	ENSCPOG00000006251	SND1	98	92.342	Cavia_porcellus
ENSSHAG00000015359	SND1	100	93.018	ENSCCAG00000036847	SND1	98	93.439	Cebus_capucinus
ENSSHAG00000015359	SND1	100	93.018	ENSCATG00000035214	SND1	99	93.228	Cercocebus_atys
ENSSHAG00000015359	SND1	100	92.455	ENSCLAG00000011796	SND1	98	92.455	Chinchilla_lanigera
ENSSHAG00000015359	SND1	100	93.018	ENSCSAG00000010182	SND1	98	93.018	Chlorocebus_sabaeus
ENSSHAG00000015359	SND1	80	86.275	ENSCHOG00000002218	SND1	86	86.275	Choloepus_hoffmanni
ENSSHAG00000015359	SND1	100	89.640	ENSCPBG00000018094	SND1	98	89.640	Chrysemys_picta_bellii
ENSSHAG00000015359	SND1	100	55.322	ENSCING00000000524	-	97	55.322	Ciona_intestinalis
ENSSHAG00000015359	SND1	100	56.488	ENSCSAVG00000008807	-	97	56.488	Ciona_savignyi
ENSSHAG00000015359	SND1	100	93.018	ENSCANG00000035119	SND1	98	93.018	Colobus_angolensis_palliatus
ENSSHAG00000015359	SND1	100	91.329	ENSCGRG00001022514	Snd1	98	91.329	Cricetulus_griseus_chok1gshd
ENSSHAG00000015359	SND1	99	91.545	ENSCGRG00000012277	Snd1	100	91.545	Cricetulus_griseus_crigri
ENSSHAG00000015359	SND1	100	80.787	ENSCSEG00000008661	snd1	98	80.787	Cynoglossus_semilaevis
ENSSHAG00000015359	SND1	100	81.573	ENSCVAG00000010316	snd1	100	80.345	Cyprinodon_variegatus
ENSSHAG00000015359	SND1	100	82.155	ENSDARG00000006766	snd1	98	82.155	Danio_rerio
ENSSHAG00000015359	SND1	99	90.519	ENSDNOG00000006795	SND1	99	90.519	Dasypus_novemcinctus
ENSSHAG00000015359	SND1	100	92.568	ENSDORG00000000336	Snd1	98	92.568	Dipodomys_ordii
ENSSHAG00000015359	SND1	99	48.959	FBgn0035121	Tudor-SN	97	48.959	Drosophila_melanogaster
ENSSHAG00000015359	SND1	92	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSSHAG00000015359	SND1	59	67.209	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSSHAG00000015359	SND1	100	91.372	ENSEASG00005008513	SND1	98	91.372	Equus_asinus_asinus
ENSSHAG00000015359	SND1	100	92.905	ENSECAG00000011451	SND1	98	92.905	Equus_caballus
ENSSHAG00000015359	SND1	100	80.856	ENSEEUG00000014737	SND1	98	80.856	Erinaceus_europaeus
ENSSHAG00000015359	SND1	99	80.000	ENSELUG00000001805	snd1	94	80.000	Esox_lucius
ENSSHAG00000015359	SND1	100	93.018	ENSFCAG00000008289	SND1	98	93.018	Felis_catus
ENSSHAG00000015359	SND1	100	92.455	ENSFDAG00000015881	SND1	98	92.455	Fukomys_damarensis
ENSSHAG00000015359	SND1	100	79.231	ENSFHEG00000004093	snd1	97	80.796	Fundulus_heteroclitus
ENSSHAG00000015359	SND1	63	73.729	ENSGMOG00000018932	snd1	63	73.729	Gadus_morhua
ENSSHAG00000015359	SND1	100	81.573	ENSGAFG00000008421	snd1	99	81.941	Gambusia_affinis
ENSSHAG00000015359	SND1	100	52.778	ENSGACG00000019793	snd1	98	52.778	Gasterosteus_aculeatus
ENSSHAG00000015359	SND1	100	92.905	ENSGGOG00000009614	SND1	99	93.326	Gorilla_gorilla
ENSSHAG00000015359	SND1	100	81.124	ENSHBUG00000019135	snd1	98	81.124	Haplochromis_burtoni
ENSSHAG00000015359	SND1	100	92.342	ENSHGLG00000003618	SND1	98	92.342	Heterocephalus_glaber_female
ENSSHAG00000015359	SND1	100	92.342	ENSHGLG00100012449	SND1	98	92.342	Heterocephalus_glaber_male
ENSSHAG00000015359	SND1	100	80.112	ENSHCOG00000005266	snd1	98	80.112	Hippocampus_comes
ENSSHAG00000015359	SND1	100	80.246	ENSIPUG00000013279	snd1	98	80.246	Ictalurus_punctatus
ENSSHAG00000015359	SND1	100	92.680	ENSSTOG00000002140	SND1	98	92.680	Ictidomys_tridecemlineatus
ENSSHAG00000015359	SND1	100	92.905	ENSJJAG00000009561	Snd1	98	92.905	Jaculus_jaculus
ENSSHAG00000015359	SND1	100	81.461	ENSKMAG00000016997	snd1	98	81.461	Kryptolebias_marmoratus
ENSSHAG00000015359	SND1	100	81.533	ENSLBEG00000013563	snd1	98	79.888	Labrus_bergylta
ENSSHAG00000015359	SND1	100	82.851	ENSLOCG00000015537	snd1	98	82.851	Lepisosteus_oculatus
ENSSHAG00000015359	SND1	100	92.793	ENSLAFG00000009696	SND1	98	92.793	Loxodonta_africana
ENSSHAG00000015359	SND1	100	93.018	ENSMFAG00000038114	SND1	99	93.228	Macaca_fascicularis
ENSSHAG00000015359	SND1	100	93.018	ENSMMUG00000015432	SND1	98	93.018	Macaca_mulatta
ENSSHAG00000015359	SND1	100	93.018	ENSMNEG00000039808	SND1	99	93.439	Macaca_nemestrina
ENSSHAG00000015359	SND1	100	92.905	ENSMLEG00000029040	SND1	99	93.326	Mandrillus_leucophaeus
ENSSHAG00000015359	SND1	100	80.787	ENSMAMG00000011739	snd1	98	80.787	Mastacembelus_armatus
ENSSHAG00000015359	SND1	100	81.124	ENSMZEG00005005681	snd1	98	81.124	Maylandia_zebra
ENSSHAG00000015359	SND1	100	92.680	ENSMICG00000000097	SND1	98	92.680	Microcebus_murinus
ENSSHAG00000015359	SND1	100	91.779	ENSMOCG00000005040	Snd1	98	91.779	Microtus_ochrogaster
ENSSHAG00000015359	SND1	100	80.899	ENSMMOG00000001795	snd1	98	80.899	Mola_mola
ENSSHAG00000015359	SND1	100	94.932	ENSMODG00000015182	SND1	98	94.932	Monodelphis_domestica
ENSSHAG00000015359	SND1	100	80.674	ENSMALG00000012071	snd1	98	80.674	Monopterus_albus
ENSSHAG00000015359	SND1	100	91.779	MGP_CAROLIEiJ_G0028159	Snd1	98	91.779	Mus_caroli
ENSSHAG00000015359	SND1	100	91.667	ENSMUSG00000001424	Snd1	98	91.667	Mus_musculus
ENSSHAG00000015359	SND1	100	91.667	MGP_PahariEiJ_G0021917	Snd1	98	91.667	Mus_pahari
ENSSHAG00000015359	SND1	100	91.779	MGP_SPRETEiJ_G0029159	Snd1	98	91.779	Mus_spretus
ENSSHAG00000015359	SND1	100	92.680	ENSMPUG00000006545	SND1	98	92.680	Mustela_putorius_furo
ENSSHAG00000015359	SND1	99	91.853	ENSMLUG00000017130	SND1	100	91.853	Myotis_lucifugus
ENSSHAG00000015359	SND1	100	92.005	ENSNGAG00000011186	Snd1	98	92.005	Nannospalax_galili
ENSSHAG00000015359	SND1	100	81.011	ENSNBRG00000006681	snd1	98	81.011	Neolamprologus_brichardi
ENSSHAG00000015359	SND1	100	92.905	ENSNLEG00000012263	SND1	99	93.326	Nomascus_leucogenys
ENSSHAG00000015359	SND1	92	100.000	ENSOPRG00000013405	SND1	90	100.000	Ochotona_princeps
ENSSHAG00000015359	SND1	100	92.568	ENSODEG00000011502	SND1	98	92.568	Octodon_degus
ENSSHAG00000015359	SND1	100	80.899	ENSONIG00000011481	snd1	95	80.899	Oreochromis_niloticus
ENSSHAG00000015359	SND1	100	92.230	ENSOANG00000000817	SND1	98	92.230	Ornithorhynchus_anatinus
ENSSHAG00000015359	SND1	100	92.342	ENSOCUG00000001620	SND1	98	92.342	Oryctolagus_cuniculus
ENSSHAG00000015359	SND1	100	80.337	ENSORLG00000015201	snd1	98	80.337	Oryzias_latipes
ENSSHAG00000015359	SND1	100	80.449	ENSORLG00020013991	snd1	98	80.449	Oryzias_latipes_hni
ENSSHAG00000015359	SND1	100	80.449	ENSORLG00015012436	snd1	98	80.449	Oryzias_latipes_hsok
ENSSHAG00000015359	SND1	100	80.787	ENSOMEG00000006406	snd1	98	80.787	Oryzias_melastigma
ENSSHAG00000015359	SND1	100	92.584	ENSOGAG00000013356	SND1	92	92.584	Otolemur_garnettii
ENSSHAG00000015359	SND1	99	91.063	ENSOARG00000002149	SND1	99	91.063	Ovis_aries
ENSSHAG00000015359	SND1	100	92.793	ENSPPAG00000042947	SND1	99	93.213	Pan_paniscus
ENSSHAG00000015359	SND1	100	93.018	ENSPPRG00000004494	SND1	98	93.018	Panthera_pardus
ENSSHAG00000015359	SND1	100	92.905	ENSPTIG00000014214	SND1	98	92.905	Panthera_tigris_altaica
ENSSHAG00000015359	SND1	100	92.793	ENSPTRG00000023911	SND1	99	93.213	Pan_troglodytes
ENSSHAG00000015359	SND1	99	93.228	ENSPANG00000011997	SND1	99	93.228	Papio_anubis
ENSSHAG00000015359	SND1	100	78.930	ENSPKIG00000023494	snd1	98	78.930	Paramormyrops_kingsleyae
ENSSHAG00000015359	SND1	94	79.641	ENSPMGG00000003629	snd1	100	79.641	Periophthalmus_magnuspinnatus
ENSSHAG00000015359	SND1	100	91.779	ENSPEMG00000010240	Snd1	98	91.779	Peromyscus_maniculatus_bairdii
ENSSHAG00000015359	SND1	99	71.783	ENSPMAG00000007915	-	99	71.783	Petromyzon_marinus
ENSSHAG00000015359	SND1	100	95.383	ENSPCIG00000011561	SND1	98	95.383	Phascolarctos_cinereus
ENSSHAG00000015359	SND1	100	81.011	ENSPFOG00000001557	snd1	98	81.011	Poecilia_formosa
ENSSHAG00000015359	SND1	100	81.011	ENSPLAG00000018459	snd1	95	81.011	Poecilia_latipinna
ENSSHAG00000015359	SND1	100	81.461	ENSPMEG00000006803	snd1	98	81.461	Poecilia_mexicana
ENSSHAG00000015359	SND1	100	81.461	ENSPREG00000002189	snd1	98	81.461	Poecilia_reticulata
ENSSHAG00000015359	SND1	93	92.219	ENSPPYG00000017972	SND1	97	92.219	Pongo_abelii
ENSSHAG00000015359	SND1	100	80.968	ENSPCAG00000011305	SND1	98	80.968	Procavia_capensis
ENSSHAG00000015359	SND1	100	92.793	ENSPCOG00000026791	SND1	99	93.100	Propithecus_coquereli
ENSSHAG00000015359	SND1	100	90.766	ENSPVAG00000013945	SND1	98	90.766	Pteropus_vampyrus
ENSSHAG00000015359	SND1	100	81.124	ENSPNYG00000000932	snd1	98	81.124	Pundamilia_nyererei
ENSSHAG00000015359	SND1	100	80.915	ENSPNAG00000001206	snd1	98	80.915	Pygocentrus_nattereri
ENSSHAG00000015359	SND1	100	91.554	ENSRNOG00000031173	Snd1	99	90.611	Rattus_norvegicus
ENSSHAG00000015359	SND1	75	91.337	ENSRBIG00000027782	-	93	91.255	Rhinopithecus_bieti
ENSSHAG00000015359	SND1	100	93.018	ENSRROG00000033020	SND1	98	93.018	Rhinopithecus_roxellana
ENSSHAG00000015359	SND1	100	93.131	ENSSBOG00000032461	SND1	99	93.552	Saimiri_boliviensis_boliviensis
ENSSHAG00000015359	SND1	100	80.645	ENSSFOG00015001103	snd1	98	80.645	Scleropages_formosus
ENSSHAG00000015359	SND1	100	80.112	ENSSMAG00000001932	snd1	92	80.112	Scophthalmus_maximus
ENSSHAG00000015359	SND1	100	81.236	ENSSDUG00000002699	snd1	91	81.236	Seriola_dumerili
ENSSHAG00000015359	SND1	100	73.933	ENSSLDG00000001950	snd1	98	73.933	Seriola_lalandi_dorsalis
ENSSHAG00000015359	SND1	88	95.283	ENSSARG00000004877	SND1	92	95.283	Sorex_araneus
ENSSHAG00000015359	SND1	75	83.652	ENSSPUG00000017586	SND1	96	83.652	Sphenodon_punctatus
ENSSHAG00000015359	SND1	74	82.250	ENSSPAG00000021398	snd1	95	82.250	Stegastes_partitus
ENSSHAG00000015359	SND1	100	92.793	ENSSSCG00000016590	SND1	98	92.793	Sus_scrofa
ENSSHAG00000015359	SND1	100	81.467	ENSTRUG00000014067	snd1	98	80.449	Takifugu_rubripes
ENSSHAG00000015359	SND1	100	80.787	ENSTNIG00000011019	snd1	98	80.787	Tetraodon_nigroviridis
ENSSHAG00000015359	SND1	95	87.146	ENSTBEG00000003999	SND1	100	87.146	Tupaia_belangeri
ENSSHAG00000015359	SND1	100	88.739	ENSTTRG00000006059	SND1	98	88.739	Tursiops_truncatus
ENSSHAG00000015359	SND1	93	93.156	ENSUAMG00000005604	-	93	93.156	Ursus_americanus
ENSSHAG00000015359	SND1	70	83.880	ENSUAMG00000002820	-	84	83.880	Ursus_americanus
ENSSHAG00000015359	SND1	100	93.131	ENSUMAG00000005960	SND1	98	93.131	Ursus_maritimus
ENSSHAG00000015359	SND1	79	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSSHAG00000015359	SND1	100	93.018	ENSVVUG00000007226	SND1	98	93.018	Vulpes_vulpes
ENSSHAG00000015359	SND1	99	81.828	ENSXETG00000023043	snd1	100	81.693	Xenopus_tropicalis
ENSSHAG00000015359	SND1	95	78.147	ENSXCOG00000013629	snd1	99	78.147	Xiphophorus_couchianus
ENSSHAG00000015359	SND1	100	81.573	ENSXMAG00000011469	snd1	98	81.573	Xiphophorus_maculatus