EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000015972 (Gene tree)
Gene ID: 100929369
Gene Symbol: PRDM12
Alias: PFM9
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 17921 bases
Position: chrGL834652.1:1973121-1991041
Accession: 100929369
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000018820	zf-C2H2	PF00096.26	1e-11	1	2
ENSSHAP00000018820	zf-C2H2	PF00096.26	1e-11	2	2
ENSSHAP00000018820	zf-met	PF12874.7	5.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000018975	PRDM12-201	1071	XM_003757403	ENSSHAP00000018820	356 (aa)	XP_003757451	G3WTR5

Gene Model

Click here to download ENSSHAG00000015972's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000015972's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000015972	PRDM12	54	42.105	ENSSHAG00000003250	PRDM5	94	42.105

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000015972	PRDM12	94	94.328	ENSG00000130711	PRDM12	100	89.674	Homo_sapiens
ENSSHAG00000015972	PRDM12	99	66.757	ENSAPOG00000018234	-	100	66.757	Acanthochromis_polyacanthus
ENSSHAG00000015972	PRDM12	99	75.648	ENSAPOG00000016051	prdm12b	100	76.104	Acanthochromis_polyacanthus
ENSSHAG00000015972	PRDM12	91	91.667	ENSAMEG00000016234	PRDM12	99	91.975	Ailuropoda_melanoleuca
ENSSHAG00000015972	PRDM12	99	76.903	ENSACIG00000005193	-	100	77.428	Amphilophus_citrinellus
ENSSHAG00000015972	PRDM12	99	76.984	ENSACIG00000019578	prdm12b	100	77.249	Amphilophus_citrinellus
ENSSHAG00000015972	PRDM12	99	76.702	ENSAOCG00000015040	prdm12b	100	77.428	Amphiprion_ocellaris
ENSSHAG00000015972	PRDM12	100	72.727	ENSAPEG00000022849	-	100	74.286	Amphiprion_percula
ENSSHAG00000015972	PRDM12	99	77.309	ENSAPEG00000015092	prdm12b	100	78.042	Amphiprion_percula
ENSSHAG00000015972	PRDM12	95	81.341	ENSATEG00000014595	-	99	81.341	Anabas_testudineus
ENSSHAG00000015972	PRDM12	96	94.428	ENSANAG00000020616	PRDM12	100	94.428	Aotus_nancymaae
ENSSHAG00000015972	PRDM12	99	73.990	ENSACLG00000007631	-	100	75.758	Astatotilapia_calliptera
ENSSHAG00000015972	PRDM12	99	79.670	ENSACLG00000011876	prdm12b	100	79.670	Astatotilapia_calliptera
ENSSHAG00000015972	PRDM12	99	83.065	ENSAMXG00000033665	prdm12b	100	84.677	Astyanax_mexicanus
ENSSHAG00000015972	PRDM12	99	80.441	ENSAMXG00000008540	PRDM12	100	80.441	Astyanax_mexicanus
ENSSHAG00000015972	PRDM12	94	95.522	ENSBTAG00000023797	PRDM12	100	92.265	Bos_taurus
ENSSHAG00000015972	PRDM12	94	94.627	ENSCJAG00000020540	PRDM12	100	91.690	Callithrix_jacchus
ENSSHAG00000015972	PRDM12	82	94.521	ENSCAFG00000023076	PRDM12	99	90.062	Canis_familiaris
ENSSHAG00000015972	PRDM12	94	95.224	ENSCAFG00020024046	PRDM12	100	91.233	Canis_lupus_dingo
ENSSHAG00000015972	PRDM12	94	95.224	ENSCHIG00000025005	PRDM12	100	91.736	Capra_hircus
ENSSHAG00000015972	PRDM12	88	94.586	ENSCPOG00000005901	PRDM12	95	94.586	Cavia_porcellus
ENSSHAG00000015972	PRDM12	94	94.627	ENSCCAG00000037485	PRDM12	100	90.934	Cebus_capucinus
ENSSHAG00000015972	PRDM12	94	94.627	ENSCATG00000020327	PRDM12	100	90.934	Cercocebus_atys
ENSSHAG00000015972	PRDM12	94	94.030	ENSCLAG00000005499	PRDM12	92	94.030	Chinchilla_lanigera
ENSSHAG00000015972	PRDM12	94	94.627	ENSCSAG00000014756	PRDM12	100	90.685	Chlorocebus_sabaeus
ENSSHAG00000015972	PRDM12	100	95.225	ENSCPBG00000022628	PRDM12	100	95.225	Chrysemys_picta_bellii
ENSSHAG00000015972	PRDM12	94	95.224	ENSCGRG00001015005	Prdm12	100	90.736	Cricetulus_griseus_chok1gshd
ENSSHAG00000015972	PRDM12	99	78.284	ENSCVAG00000017166	prdm12b	100	78.495	Cyprinodon_variegatus
ENSSHAG00000015972	PRDM12	99	73.657	ENSCVAG00000000944	-	100	74.425	Cyprinodon_variegatus
ENSSHAG00000015972	PRDM12	99	85.326	ENSDARG00000007430	prdm12b	100	85.326	Danio_rerio
ENSSHAG00000015972	PRDM12	94	95.509	ENSDNOG00000042302	PRDM12	99	92.521	Dasypus_novemcinctus
ENSSHAG00000015972	PRDM12	87	64.897	ENSEBUG00000016780	prdm12b	75	64.897	Eptatretus_burgeri
ENSSHAG00000015972	PRDM12	96	94.721	ENSEASG00005008472	PRDM12	100	91.460	Equus_asinus_asinus
ENSSHAG00000015972	PRDM12	96	94.428	ENSECAG00000005933	PRDM12	100	91.185	Equus_caballus
ENSSHAG00000015972	PRDM12	99	78.670	ENSELUG00000013674	PRDM12	99	78.670	Esox_lucius
ENSSHAG00000015972	PRDM12	99	82.842	ENSELUG00000009905	prdm12b	100	82.842	Esox_lucius
ENSSHAG00000015972	PRDM12	94	95.224	ENSFCAG00000043086	PRDM12	100	91.484	Felis_catus
ENSSHAG00000015972	PRDM12	100	95.506	ENSFALG00000001445	PRDM12	89	95.506	Ficedula_albicollis
ENSSHAG00000015972	PRDM12	99	77.128	ENSFHEG00000003944	prdm12b	100	78.133	Fundulus_heteroclitus
ENSSHAG00000015972	PRDM12	99	76.350	ENSFHEG00000007746	-	100	76.350	Fundulus_heteroclitus
ENSSHAG00000015972	PRDM12	99	80.618	ENSGMOG00000011797	prdm12b	99	80.899	Gadus_morhua
ENSSHAG00000015972	PRDM12	100	95.506	ENSGALG00000003895	PRDM12	100	95.506	Gallus_gallus
ENSSHAG00000015972	PRDM12	100	76.923	ENSGAFG00000010827	prdm12b	100	78.723	Gambusia_affinis
ENSSHAG00000015972	PRDM12	100	79.357	ENSGACG00000016713	prdm12b	100	79.357	Gasterosteus_aculeatus
ENSSHAG00000015972	PRDM12	100	95.506	ENSGAGG00000014083	PRDM12	100	95.506	Gopherus_agassizii
ENSSHAG00000015972	PRDM12	94	94.030	ENSGGOG00000010568	PRDM12	100	89.646	Gorilla_gorilla
ENSSHAG00000015972	PRDM12	99	78.457	ENSHBUG00000022878	prdm12b	100	78.457	Haplochromis_burtoni
ENSSHAG00000015972	PRDM12	99	73.990	ENSHBUG00000022537	-	93	75.758	Haplochromis_burtoni
ENSSHAG00000015972	PRDM12	94	93.433	ENSHGLG00000013939	PRDM12	100	89.071	Heterocephalus_glaber_female
ENSSHAG00000015972	PRDM12	91	79.592	ENSHCOG00000003663	prdm12b	100	73.096	Hippocampus_comes
ENSSHAG00000015972	PRDM12	99	74.451	ENSHCOG00000021167	-	100	74.451	Hippocampus_comes
ENSSHAG00000015972	PRDM12	99	83.784	ENSIPUG00000017053	prdm12b	100	84.054	Ictalurus_punctatus
ENSSHAG00000015972	PRDM12	99	76.438	ENSIPUG00000019544	PRDM12	100	76.438	Ictalurus_punctatus
ENSSHAG00000015972	PRDM12	95	94.985	ENSSTOG00000005986	PRDM12	88	94.985	Ictidomys_tridecemlineatus
ENSSHAG00000015972	PRDM12	93	94.864	ENSJJAG00000005424	Prdm12	100	94.864	Jaculus_jaculus
ENSSHAG00000015972	PRDM12	99	71.921	ENSKMAG00000016921	prdm12b	100	72.414	Kryptolebias_marmoratus
ENSSHAG00000015972	PRDM12	99	79.109	ENSKMAG00000021205	-	99	79.109	Kryptolebias_marmoratus
ENSSHAG00000015972	PRDM12	99	77.573	ENSLBEG00000017769	prdm12b	100	77.573	Labrus_bergylta
ENSSHAG00000015972	PRDM12	99	76.963	ENSLBEG00000007776	-	100	77.225	Labrus_bergylta
ENSSHAG00000015972	PRDM12	99	91.831	ENSLACG00000017560	PRDM12	99	91.831	Latimeria_chalumnae
ENSSHAG00000015972	PRDM12	99	85.989	ENSLOCG00000005429	prdm12b	99	87.397	Lepisosteus_oculatus
ENSSHAG00000015972	PRDM12	94	93.548	ENSLAFG00000006979	PRDM12	93	93.391	Loxodonta_africana
ENSSHAG00000015972	PRDM12	100	88.315	ENSMFAG00000040322	PRDM12	100	89.946	Macaca_fascicularis
ENSSHAG00000015972	PRDM12	94	94.627	ENSMNEG00000037234	PRDM12	100	90.934	Macaca_nemestrina
ENSSHAG00000015972	PRDM12	99	74.359	ENSMAMG00000018988	-	100	75.641	Mastacembelus_armatus
ENSSHAG00000015972	PRDM12	99	77.719	ENSMAMG00000013212	prdm12b	100	77.926	Mastacembelus_armatus
ENSSHAG00000015972	PRDM12	99	73.618	ENSMZEG00005000415	PRDM12	100	75.377	Maylandia_zebra
ENSSHAG00000015972	PRDM12	98	95.143	ENSMGAG00000005438	PRDM12	99	95.143	Meleagris_gallopavo
ENSSHAG00000015972	PRDM12	100	90.984	ENSMAUG00000013040	Prdm12	100	90.984	Mesocricetus_auratus
ENSSHAG00000015972	PRDM12	96	94.737	ENSMICG00000015480	PRDM12	100	91.460	Microcebus_murinus
ENSSHAG00000015972	PRDM12	98	93.678	ENSMOCG00000021026	Prdm12	93	94.737	Microtus_ochrogaster
ENSSHAG00000015972	PRDM12	100	98.876	ENSMODG00000012108	PRDM12	100	98.876	Monodelphis_domestica
ENSSHAG00000015972	PRDM12	99	68.011	ENSMALG00000021901	prdm12b	99	68.011	Monopterus_albus
ENSSHAG00000015972	PRDM12	94	94.925	MGP_CAROLIEiJ_G0023414	Prdm12	100	90.710	Mus_caroli
ENSSHAG00000015972	PRDM12	94	94.925	ENSMUSG00000079466	Prdm12	100	90.710	Mus_musculus
ENSSHAG00000015972	PRDM12	94	94.925	MGP_PahariEiJ_G0024871	Prdm12	100	90.710	Mus_pahari
ENSSHAG00000015972	PRDM12	94	94.925	MGP_SPRETEiJ_G0024331	Prdm12	100	90.710	Mus_spretus
ENSSHAG00000015972	PRDM12	92	94.512	ENSNGAG00000018480	Prdm12	100	90.449	Nannospalax_galili
ENSSHAG00000015972	PRDM12	99	74.863	ENSNBRG00000024312	-	100	75.956	Neolamprologus_brichardi
ENSSHAG00000015972	PRDM12	99	77.573	ENSNBRG00000006727	prdm12b	100	77.836	Neolamprologus_brichardi
ENSSHAG00000015972	PRDM12	100	88.483	ENSMEUG00000003828	PRDM12	100	88.483	Notamacropus_eugenii
ENSSHAG00000015972	PRDM12	93	93.958	ENSOPRG00000008680	PRDM12	100	93.958	Ochotona_princeps
ENSSHAG00000015972	PRDM12	96	94.152	ENSODEG00000016282	PRDM12	64	94.152	Octodon_degus
ENSSHAG00000015972	PRDM12	61	96.789	ENSOANG00000001043	PRDM12	100	96.789	Ornithorhynchus_anatinus
ENSSHAG00000015972	PRDM12	88	89.809	ENSOCUG00000008241	PRDM12	100	89.809	Oryctolagus_cuniculus
ENSSHAG00000015972	PRDM12	100	76.842	ENSORLG00000007114	prdm12b	100	76.842	Oryzias_latipes
ENSSHAG00000015972	PRDM12	99	73.214	ENSORLG00000017558	-	100	74.490	Oryzias_latipes
ENSSHAG00000015972	PRDM12	92	81.341	ENSORLG00020019565	prdm12b	100	76.178	Oryzias_latipes_hni
ENSSHAG00000015972	PRDM12	99	72.774	ENSORLG00020013167	-	100	74.300	Oryzias_latipes_hni
ENSSHAG00000015972	PRDM12	100	76.316	ENSORLG00015007621	prdm12b	100	76.316	Oryzias_latipes_hsok
ENSSHAG00000015972	PRDM12	99	73.214	ENSORLG00015003435	-	100	74.490	Oryzias_latipes_hsok
ENSSHAG00000015972	PRDM12	99	77.045	ENSOMEG00000007762	-	100	77.045	Oryzias_melastigma
ENSSHAG00000015972	PRDM12	100	75.584	ENSOMEG00000004134	prdm12b	100	75.521	Oryzias_melastigma
ENSSHAG00000015972	PRDM12	94	95.210	ENSOGAG00000007557	PRDM12	100	95.210	Otolemur_garnettii
ENSSHAG00000015972	PRDM12	83	92.177	ENSPPAG00000031506	-	99	92.177	Pan_paniscus
ENSSHAG00000015972	PRDM12	100	84.167	ENSPPRG00000023024	PRDM12	92	84.167	Panthera_pardus
ENSSHAG00000015972	PRDM12	94	94.328	ENSPTRG00000043324	-	100	89.918	Pan_troglodytes
ENSSHAG00000015972	PRDM12	94	94.328	ENSPTRG00000021475	PRDM12	100	89.918	Pan_troglodytes
ENSSHAG00000015972	PRDM12	94	94.627	ENSPANG00000025967	PRDM12	100	90.934	Papio_anubis
ENSSHAG00000015972	PRDM12	97	76.901	ENSPKIG00000004305	PRDM12	99	77.273	Paramormyrops_kingsleyae
ENSSHAG00000015972	PRDM12	99	83.690	ENSPKIG00000007228	prdm12b	100	83.957	Paramormyrops_kingsleyae
ENSSHAG00000015972	PRDM12	100	93.820	ENSPSIG00000006739	PRDM12	100	93.820	Pelodiscus_sinensis
ENSSHAG00000015972	PRDM12	99	73.177	ENSPMGG00000002356	-	100	74.026	Periophthalmus_magnuspinnatus
ENSSHAG00000015972	PRDM12	100	76.579	ENSPMGG00000008867	prdm12b	100	78.610	Periophthalmus_magnuspinnatus
ENSSHAG00000015972	PRDM12	94	95.195	ENSPEMG00000009969	Prdm12	96	91.193	Peromyscus_maniculatus_bairdii
ENSSHAG00000015972	PRDM12	100	99.157	ENSPCIG00000024119	PRDM12	100	99.157	Phascolarctos_cinereus
ENSSHAG00000015972	PRDM12	99	78.706	ENSPFOG00000019841	prdm12b	100	78.706	Poecilia_formosa
ENSSHAG00000015972	PRDM12	92	84.084	ENSPLAG00000016626	prdm12b	100	77.836	Poecilia_latipinna
ENSSHAG00000015972	PRDM12	97	75.946	ENSPMEG00000016698	prdm12b	100	77.236	Poecilia_mexicana
ENSSHAG00000015972	PRDM12	92	83.929	ENSPREG00000015073	prdm12b	100	77.546	Poecilia_reticulata
ENSSHAG00000015972	PRDM12	94	76.879	ENSPREG00000003211	-	94	76.879	Poecilia_reticulata
ENSSHAG00000015972	PRDM12	97	93.043	ENSPPYG00000019694	PRDM12	98	93.043	Pongo_abelii
ENSSHAG00000015972	PRDM12	94	95.224	ENSPCOG00000022255	PRDM12	100	91.008	Propithecus_coquereli
ENSSHAG00000015972	PRDM12	94	94.925	ENSPVAG00000001511	PRDM12	100	90.736	Pteropus_vampyrus
ENSSHAG00000015972	PRDM12	99	77.778	ENSPNYG00000009607	prdm12b	100	77.778	Pundamilia_nyererei
ENSSHAG00000015972	PRDM12	99	73.618	ENSPNYG00000013589	-	100	75.377	Pundamilia_nyererei
ENSSHAG00000015972	PRDM12	99	74.801	ENSPNAG00000013396	PRDM12	100	76.613	Pygocentrus_nattereri
ENSSHAG00000015972	PRDM12	99	84.054	ENSPNAG00000024532	prdm12b	100	85.676	Pygocentrus_nattereri
ENSSHAG00000015972	PRDM12	94	94.925	ENSRNOG00000009218	Prdm12	100	90.710	Rattus_norvegicus
ENSSHAG00000015972	PRDM12	89	94.969	ENSRBIG00000042712	PRDM12	98	87.465	Rhinopithecus_bieti
ENSSHAG00000015972	PRDM12	90	95.031	ENSRROG00000043554	PRDM12	100	95.031	Rhinopithecus_roxellana
ENSSHAG00000015972	PRDM12	99	75.255	ENSSMAG00000003754	prdm12b	100	75.255	Scophthalmus_maximus
ENSSHAG00000015972	PRDM12	99	77.403	ENSSDUG00000023498	prdm12b	100	77.403	Seriola_dumerili
ENSSHAG00000015972	PRDM12	96	81.395	ENSSDUG00000019071	-	100	77.143	Seriola_dumerili
ENSSHAG00000015972	PRDM12	99	82.123	ENSSLDG00000013562	-	100	82.123	Seriola_lalandi_dorsalis
ENSSHAG00000015972	PRDM12	99	77.749	ENSSLDG00000009557	prdm12b	100	77.749	Seriola_lalandi_dorsalis
ENSSHAG00000015972	PRDM12	100	94.944	ENSSPUG00000013424	PRDM12	100	94.944	Sphenodon_punctatus
ENSSHAG00000015972	PRDM12	99	67.268	ENSSPAG00000022420	-	100	70.321	Stegastes_partitus
ENSSHAG00000015972	PRDM12	99	76.762	ENSSPAG00000018824	prdm12b	100	77.487	Stegastes_partitus
ENSSHAG00000015972	PRDM12	94	95.224	ENSSSCG00000005703	PRDM12	100	91.233	Sus_scrofa
ENSSHAG00000015972	PRDM12	99	78.237	ENSTRUG00000013239	-	100	78.237	Takifugu_rubripes
ENSSHAG00000015972	PRDM12	99	79.245	ENSTRUG00000018659	prdm12b	100	79.245	Takifugu_rubripes
ENSSHAG00000015972	PRDM12	99	78.820	ENSTNIG00000009020	prdm12b	99	78.763	Tetraodon_nigroviridis
ENSSHAG00000015972	PRDM12	99	76.667	ENSTNIG00000005859	-	99	76.667	Tetraodon_nigroviridis
ENSSHAG00000015972	PRDM12	94	95.224	ENSUAMG00000009653	PRDM12	94	94.444	Ursus_americanus
ENSSHAG00000015972	PRDM12	94	95.195	ENSVVUG00000027662	PRDM12	79	95.195	Vulpes_vulpes
ENSSHAG00000015972	PRDM12	100	77.600	ENSXCOG00000002836	prdm12b	100	78.877	Xiphophorus_couchianus
ENSSHAG00000015972	PRDM12	99	74.611	ENSXMAG00000028012	-	100	75.389	Xiphophorus_maculatus
ENSSHAG00000015972	PRDM12	99	77.188	ENSXMAG00000005537	prdm12b	100	78.457	Xiphophorus_maculatus