EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000016016 (Gene tree)
Gene ID: 100934134
Gene Symbol: GPATCH1
Alias: ECGP|FLJ10206|FLJ38686|GPATC1
Full Name: G-patch domain containing 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 51052 bases
Position: chrGL834643.1:1989962-2041013
Accession: 100934134
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000018868	DUF1604	PF07713.13	1e-35	1	1
ENSSHAP00000018867	DUF1604	PF07713.13	1e-35	1	1
ENSSHAP00000018867	G-patch	PF01585.23	2e-07	1	1
ENSSHAP00000018868	G-patch	PF01585.23	2.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000019023	GPATCH1-201	3581	-	ENSSHAP00000018867	942 (aa)	XP_012409215	G3WTW2
ENSSHAT00000019024	GPATCH1-202	3557	-	ENSSHAP00000018868	934 (aa)	-	G3WTW3

Gene Model

Click here to download ENSSHAG00000016016's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000016016's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000016016	GPATCH1	99	72.669	ENSG00000076650	GPATCH1	99	73.419	Homo_sapiens
ENSSHAG00000016016	GPATCH1	99	74.464	ENSAMEG00000015575	GPATCH1	99	74.362	Ailuropoda_melanoleuca
ENSSHAG00000016016	GPATCH1	81	69.061	ENSAOCG00000006668	gpatch1	75	69.061	Amphiprion_ocellaris
ENSSHAG00000016016	GPATCH1	81	53.539	ENSAPEG00000000026	gpatch1	90	50.459	Amphiprion_percula
ENSSHAG00000016016	GPATCH1	90	49.658	ENSATEG00000014494	gpatch1	90	51.373	Anabas_testudineus
ENSSHAG00000016016	GPATCH1	90	61.130	ENSAPLG00000007584	GPATCH1	96	61.220	Anas_platyrhynchos
ENSSHAG00000016016	GPATCH1	99	69.182	ENSANAG00000027002	GPATCH1	99	72.454	Aotus_nancymaae
ENSSHAG00000016016	GPATCH1	81	52.086	ENSACLG00000024740	gpatch1	79	53.038	Astatotilapia_calliptera
ENSSHAG00000016016	GPATCH1	92	51.183	ENSAMXG00000020177	gpatch1	98	52.273	Astyanax_mexicanus
ENSSHAG00000016016	GPATCH1	90	74.912	ENSBTAG00000000721	GPATCH1	99	73.712	Bos_taurus
ENSSHAG00000016016	GPATCH1	70	30.657	WBGene00011109	R07E5.1	71	30.422	Caenorhabditis_elegans
ENSSHAG00000016016	GPATCH1	99	69.239	ENSCJAG00000000684	GPATCH1	99	72.901	Callithrix_jacchus
ENSSHAG00000016016	GPATCH1	99	74.894	ENSCAFG00000007457	GPATCH1	84	74.574	Canis_familiaris
ENSSHAG00000016016	GPATCH1	94	74.315	ENSCAFG00020019731	GPATCH1	91	75.264	Canis_lupus_dingo
ENSSHAG00000016016	GPATCH1	90	75.618	ENSCHIG00000019626	GPATCH1	99	74.142	Capra_hircus
ENSSHAG00000016016	GPATCH1	96	69.332	ENSCAPG00000008827	GPATCH1	99	68.277	Cavia_aperea
ENSSHAG00000016016	GPATCH1	99	70.551	ENSCPOG00000024477	GPATCH1	99	71.230	Cavia_porcellus
ENSSHAG00000016016	GPATCH1	99	68.757	ENSCCAG00000024676	GPATCH1	99	72.026	Cebus_capucinus
ENSSHAG00000016016	GPATCH1	99	72.639	ENSCATG00000043637	GPATCH1	99	73.391	Cercocebus_atys
ENSSHAG00000016016	GPATCH1	96	71.460	ENSCLAG00000003395	-	100	70.871	Chinchilla_lanigera
ENSSHAG00000016016	GPATCH1	100	70.011	ENSCSAG00000004743	GPATCH1	100	70.864	Chlorocebus_sabaeus
ENSSHAG00000016016	GPATCH1	93	63.552	ENSCHOG00000012865	GPATCH1	100	63.322	Choloepus_hoffmanni
ENSSHAG00000016016	GPATCH1	78	68.947	ENSCPBG00000000666	GPATCH1	92	69.220	Chrysemys_picta_bellii
ENSSHAG00000016016	GPATCH1	68	35.933	ENSCING00000012518	-	84	34.452	Ciona_intestinalis
ENSSHAG00000016016	GPATCH1	90	73.288	ENSCANG00000012540	GPATCH1	99	72.831	Colobus_angolensis_palliatus
ENSSHAG00000016016	GPATCH1	96	68.702	ENSCGRG00001016736	Gpatch1	99	69.793	Cricetulus_griseus_chok1gshd
ENSSHAG00000016016	GPATCH1	79	61.538	ENSCGRG00000005069	Gpatch1	78	62.432	Cricetulus_griseus_crigri
ENSSHAG00000016016	GPATCH1	80	49.227	ENSCSEG00000019456	-	84	60.550	Cynoglossus_semilaevis
ENSSHAG00000016016	GPATCH1	93	51.007	ENSDARG00000033418	gpatch1	93	51.571	Danio_rerio
ENSSHAG00000016016	GPATCH1	90	74.678	ENSDNOG00000005291	GPATCH1	95	74.356	Dasypus_novemcinctus
ENSSHAG00000016016	GPATCH1	94	66.781	ENSDORG00000012546	Gpatch1	94	68.198	Dipodomys_ordii
ENSSHAG00000016016	GPATCH1	82	31.710	FBgn0036386	CG8833	67	32.961	Drosophila_melanogaster
ENSSHAG00000016016	GPATCH1	99	65.525	ENSETEG00000003626	GPATCH1	92	66.042	Echinops_telfairi
ENSSHAG00000016016	GPATCH1	95	35.939	ENSEBUG00000011286	gpatch1	91	36.770	Eptatretus_burgeri
ENSSHAG00000016016	GPATCH1	90	74.289	ENSEASG00005021162	GPATCH1	93	75.062	Equus_asinus_asinus
ENSSHAG00000016016	GPATCH1	90	75.000	ENSECAG00000022743	GPATCH1	88	74.678	Equus_caballus
ENSSHAG00000016016	GPATCH1	77	75.000	ENSEEUG00000012925	GPATCH1	78	75.000	Erinaceus_europaeus
ENSSHAG00000016016	GPATCH1	99	46.830	ENSELUG00000018195	gpatch1	90	49.432	Esox_lucius
ENSSHAG00000016016	GPATCH1	99	73.298	ENSFCAG00000014917	GPATCH1	99	73.298	Felis_catus
ENSSHAG00000016016	GPATCH1	99	60.460	ENSFALG00000007821	GPATCH1	91	60.970	Ficedula_albicollis
ENSSHAG00000016016	GPATCH1	96	70.667	ENSFDAG00000003871	GPATCH1	100	70.374	Fukomys_damarensis
ENSSHAG00000016016	GPATCH1	81	46.144	ENSGMOG00000003830	gpatch1	95	45.012	Gadus_morhua
ENSSHAG00000016016	GPATCH1	93	63.326	ENSGALG00000004839	GPATCH1	94	63.509	Gallus_gallus
ENSSHAG00000016016	GPATCH1	90	47.664	ENSGACG00000017544	gpatch1	93	48.889	Gasterosteus_aculeatus
ENSSHAG00000016016	GPATCH1	100	66.279	ENSGAGG00000010067	GPATCH1	100	65.742	Gopherus_agassizii
ENSSHAG00000016016	GPATCH1	98	71.647	ENSGGOG00000010862	GPATCH1	99	72.907	Gorilla_gorilla
ENSSHAG00000016016	GPATCH1	81	52.229	ENSHBUG00000023462	gpatch1	90	51.076	Haplochromis_burtoni
ENSSHAG00000016016	GPATCH1	99	71.762	ENSHGLG00000009334	GPATCH1	99	71.306	Heterocephalus_glaber_female
ENSSHAG00000016016	GPATCH1	99	71.868	ENSHGLG00100018074	GPATCH1	99	71.413	Heterocephalus_glaber_male
ENSSHAG00000016016	GPATCH1	93	51.522	ENSIPUG00000014977	gpatch1	90	52.794	Ictalurus_punctatus
ENSSHAG00000016016	GPATCH1	99	72.901	ENSSTOG00000003720	GPATCH1	99	72.582	Ictidomys_tridecemlineatus
ENSSHAG00000016016	GPATCH1	90	71.849	ENSJJAG00000023765	Gpatch1	99	70.708	Jaculus_jaculus
ENSSHAG00000016016	GPATCH1	90	50.116	ENSKMAG00000017950	gpatch1	92	49.944	Kryptolebias_marmoratus
ENSSHAG00000016016	GPATCH1	93	48.446	ENSLBEG00000026527	gpatch1	88	50.958	Labrus_bergylta
ENSSHAG00000016016	GPATCH1	88	55.889	ENSLACG00000008130	GPATCH1	91	56.604	Latimeria_chalumnae
ENSSHAG00000016016	GPATCH1	81	57.847	ENSLOCG00000001800	gpatch1	90	55.000	Lepisosteus_oculatus
ENSSHAG00000016016	GPATCH1	99	73.644	ENSLAFG00000013589	GPATCH1	99	73.936	Loxodonta_africana
ENSSHAG00000016016	GPATCH1	90	73.404	ENSMFAG00000034418	GPATCH1	83	86.792	Macaca_fascicularis
ENSSHAG00000016016	GPATCH1	99	72.443	ENSMMUG00000011790	GPATCH1	99	73.197	Macaca_mulatta
ENSSHAG00000016016	GPATCH1	99	72.056	ENSMNEG00000045084	GPATCH1	99	72.805	Macaca_nemestrina
ENSSHAG00000016016	GPATCH1	99	62.232	ENSMLEG00000043840	GPATCH1	99	62.876	Mandrillus_leucophaeus
ENSSHAG00000016016	GPATCH1	81	51.960	ENSMZEG00005001926	gpatch1	80	52.911	Maylandia_zebra
ENSSHAG00000016016	GPATCH1	89	64.447	ENSMGAG00000005775	GPATCH1	89	63.995	Meleagris_gallopavo
ENSSHAG00000016016	GPATCH1	90	65.610	ENSMICG00000004829	GPATCH1	93	66.471	Microcebus_murinus
ENSSHAG00000016016	GPATCH1	99	69.626	ENSMOCG00000000174	Gpatch1	100	69.412	Microtus_ochrogaster
ENSSHAG00000016016	GPATCH1	94	47.443	ENSMMOG00000002140	gpatch1	97	47.225	Mola_mola
ENSSHAG00000016016	GPATCH1	100	87.473	ENSMODG00000012226	GPATCH1	99	87.566	Monodelphis_domestica
ENSSHAG00000016016	GPATCH1	81	49.812	ENSMALG00000014386	gpatch1	90	49.829	Monopterus_albus
ENSSHAG00000016016	GPATCH1	99	71.140	ENSMUSG00000063808	Gpatch1	100	88.776	Mus_musculus
ENSSHAG00000016016	GPATCH1	99	70.975	MGP_PahariEiJ_G0012816	Gpatch1	100	89.796	Mus_pahari
ENSSHAG00000016016	GPATCH1	99	70.957	MGP_SPRETEiJ_G0030681	Gpatch1	100	89.796	Mus_spretus
ENSSHAG00000016016	GPATCH1	100	74.655	ENSMPUG00000007658	GPATCH1	100	74.337	Mustela_putorius_furo
ENSSHAG00000016016	GPATCH1	99	73.927	ENSMLUG00000012161	GPATCH1	99	73.712	Myotis_lucifugus
ENSSHAG00000016016	GPATCH1	100	71.050	ENSNGAG00000012455	Gpatch1	100	69.947	Nannospalax_galili
ENSSHAG00000016016	GPATCH1	99	72.270	ENSNLEG00000007659	GPATCH1	99	73.019	Nomascus_leucogenys
ENSSHAG00000016016	GPATCH1	78	80.381	ENSMEUG00000015174	GPATCH1	79	80.109	Notamacropus_eugenii
ENSSHAG00000016016	GPATCH1	99	69.035	ENSODEG00000007103	GPATCH1	99	68.877	Octodon_degus
ENSSHAG00000016016	GPATCH1	81	54.452	ENSONIG00000003302	gpatch1	91	53.442	Oreochromis_niloticus
ENSSHAG00000016016	GPATCH1	99	72.204	ENSOANG00000012732	GPATCH1	99	71.140	Ornithorhynchus_anatinus
ENSSHAG00000016016	GPATCH1	99	73.283	ENSOCUG00000015905	GPATCH1	99	73.191	Oryctolagus_cuniculus
ENSSHAG00000016016	GPATCH1	90	48.772	ENSORLG00000018706	gpatch1	88	49.590	Oryzias_latipes
ENSSHAG00000016016	GPATCH1	90	48.208	ENSOMEG00000022688	gpatch1	90	49.767	Oryzias_melastigma
ENSSHAG00000016016	GPATCH1	84	74.359	ENSOGAG00000004016	GPATCH1	96	75.658	Otolemur_garnettii
ENSSHAG00000016016	GPATCH1	89	74.822	ENSOARG00000004365	GPATCH1	99	73.622	Ovis_aries
ENSSHAG00000016016	GPATCH1	99	72.669	ENSPPAG00000020990	GPATCH1	99	73.419	Pan_paniscus
ENSSHAG00000016016	GPATCH1	99	73.617	ENSPPRG00000017245	GPATCH1	99	73.298	Panthera_pardus
ENSSHAG00000016016	GPATCH1	99	74.468	ENSPTIG00000019649	GPATCH1	99	74.149	Panthera_tigris_altaica
ENSSHAG00000016016	GPATCH1	99	72.669	ENSPTRG00000010803	GPATCH1	99	73.419	Pan_troglodytes
ENSSHAG00000016016	GPATCH1	90	74.205	ENSPANG00000012374	GPATCH1	96	73.974	Papio_anubis
ENSSHAG00000016016	GPATCH1	81	55.287	ENSPKIG00000020745	gpatch1	77	56.795	Paramormyrops_kingsleyae
ENSSHAG00000016016	GPATCH1	99	65.079	ENSPSIG00000013433	GPATCH1	99	65.503	Pelodiscus_sinensis
ENSSHAG00000016016	GPATCH1	99	70.957	ENSPEMG00000000636	Gpatch1	99	70.386	Peromyscus_maniculatus_bairdii
ENSSHAG00000016016	GPATCH1	91	92.084	ENSPCIG00000021003	GPATCH1	97	91.851	Phascolarctos_cinereus
ENSSHAG00000016016	GPATCH1	70	47.647	ENSPREG00000008264	gpatch1	99	41.336	Poecilia_reticulata
ENSSHAG00000016016	GPATCH1	99	70.457	ENSPPYG00000009824	GPATCH1	99	71.095	Pongo_abelii
ENSSHAG00000016016	GPATCH1	83	67.521	ENSPCAG00000005931	GPATCH1	92	67.867	Procavia_capensis
ENSSHAG00000016016	GPATCH1	93	68.764	ENSPCOG00000009674	GPATCH1	97	68.353	Propithecus_coquereli
ENSSHAG00000016016	GPATCH1	90	74.659	ENSPVAG00000017767	GPATCH1	91	74.659	Pteropus_vampyrus
ENSSHAG00000016016	GPATCH1	81	52.685	ENSPNYG00000018189	gpatch1	89	54.033	Pundamilia_nyererei
ENSSHAG00000016016	GPATCH1	92	52.427	ENSPNAG00000013187	gpatch1	92	53.094	Pygocentrus_nattereri
ENSSHAG00000016016	GPATCH1	99	71.565	ENSRNOG00000011584	Gpatch1	99	71.353	Rattus_norvegicus
ENSSHAG00000016016	GPATCH1	99	65.632	ENSRBIG00000034723	GPATCH1	99	62.741	Rhinopithecus_bieti
ENSSHAG00000016016	GPATCH1	99	72.377	ENSRROG00000024428	GPATCH1	99	73.126	Rhinopithecus_roxellana
ENSSHAG00000016016	GPATCH1	99	70.204	ENSSBOG00000034650	GPATCH1	99	71.919	Saimiri_boliviensis_boliviensis
ENSSHAG00000016016	GPATCH1	90	54.186	ENSSFOG00015011535	gpatch1	90	54.576	Scleropages_formosus
ENSSHAG00000016016	GPATCH1	96	53.261	ENSSMAG00000002883	gpatch1	93	47.562	Scophthalmus_maximus
ENSSHAG00000016016	GPATCH1	81	52.292	ENSSDUG00000007444	gpatch1	90	51.724	Seriola_dumerili
ENSSHAG00000016016	GPATCH1	81	52.632	ENSSLDG00000002856	gpatch1	94	53.373	Seriola_lalandi_dorsalis
ENSSHAG00000016016	GPATCH1	72	76.855	ENSSARG00000004108	GPATCH1	72	77.415	Sorex_araneus
ENSSHAG00000016016	GPATCH1	90	75.736	ENSSSCG00000002865	GPATCH1	94	75.736	Sus_scrofa
ENSSHAG00000016016	GPATCH1	92	61.636	ENSTGUG00000009401	GPATCH1	91	61.702	Taeniopygia_guttata
ENSSHAG00000016016	GPATCH1	81	49.936	ENSTRUG00000005785	-	90	48.775	Takifugu_rubripes
ENSSHAG00000016016	GPATCH1	81	49.936	ENSTRUG00000025081	gpatch1	90	48.775	Takifugu_rubripes
ENSSHAG00000016016	GPATCH1	81	51.220	ENSTNIG00000002554	gpatch1	97	51.344	Tetraodon_nigroviridis
ENSSHAG00000016016	GPATCH1	64	63.128	ENSTBEG00000007750	-	84	63.128	Tupaia_belangeri
ENSSHAG00000016016	GPATCH1	90	67.450	ENSTTRG00000012221	GPATCH1	99	67.410	Tursiops_truncatus
ENSSHAG00000016016	GPATCH1	90	74.556	ENSUMAG00000014645	GPATCH1	96	75.810	Ursus_maritimus
ENSSHAG00000016016	GPATCH1	79	89.143	ENSVPAG00000010313	GPATCH1	86	89.071	Vicugna_pacos
ENSSHAG00000016016	GPATCH1	94	74.315	ENSVVUG00000016572	GPATCH1	91	75.264	Vulpes_vulpes
ENSSHAG00000016016	GPATCH1	99	50.262	ENSXETG00000018276	gpatch1	99	50.785	Xenopus_tropicalis