EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000016207 (Gene tree)
Gene ID: 100934609
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 71790 bases
Position: chrGL849907.1:2068593-2140382
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000019092	XRN_N	PF03159.18	6.4e-84	1	1
ENSSHAP00000019091	XRN_N	PF03159.18	6.5e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000019248	XRN1-202	5049	-	ENSSHAP00000019092	1682 (aa)	-	G3WUI7
ENSSHAT00000019247	XRN1-201	5121	-	ENSSHAP00000019091	1706 (aa)	-	G3WUI6

Gene Model

Click here to download ENSSHAG00000016207's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03008	Ribosome biogenesis in eukaryotes	KEGG
shr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000016207's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000016207	XRN1	100	81.254	ENSG00000114127	XRN1	100	95.152	Homo_sapiens
ENSSHAG00000016207	XRN1	95	72.273	ENSAPOG00000000622	xrn1	94	76.695	Acanthochromis_polyacanthus
ENSSHAG00000016207	XRN1	100	80.664	ENSAMEG00000012538	XRN1	99	81.257	Ailuropoda_melanoleuca
ENSSHAG00000016207	XRN1	94	71.678	ENSACIG00000001057	xrn1	96	71.844	Amphilophus_citrinellus
ENSSHAG00000016207	XRN1	95	68.740	ENSAOCG00000014097	xrn1	97	70.218	Amphiprion_ocellaris
ENSSHAG00000016207	XRN1	100	60.136	ENSAPEG00000006620	xrn1	97	70.462	Amphiprion_percula
ENSSHAG00000016207	XRN1	95	68.097	ENSATEG00000009752	xrn1	98	68.196	Anabas_testudineus
ENSSHAG00000016207	XRN1	100	78.319	ENSAPLG00000004905	XRN1	100	77.913	Anas_platyrhynchos
ENSSHAG00000016207	XRN1	100	73.804	ENSACAG00000004985	XRN1	99	73.576	Anolis_carolinensis
ENSSHAG00000016207	XRN1	100	81.468	ENSANAG00000029013	XRN1	97	88.899	Aotus_nancymaae
ENSSHAG00000016207	XRN1	100	59.304	ENSACLG00000004806	xrn1	98	59.226	Astatotilapia_calliptera
ENSSHAG00000016207	XRN1	99	59.756	ENSAMXG00000019370	xrn1	72	94.872	Astyanax_mexicanus
ENSSHAG00000016207	XRN1	100	81.528	ENSBTAG00000011524	XRN1	99	81.646	Bos_taurus
ENSSHAG00000016207	XRN1	69	37.432	WBGene00012730	xrn-1	81	37.070	Caenorhabditis_elegans
ENSSHAG00000016207	XRN1	100	80.935	ENSCJAG00000001872	XRN1	99	81.113	Callithrix_jacchus
ENSSHAG00000016207	XRN1	100	81.054	ENSCAFG00000007783	XRN1	99	81.350	Canis_familiaris
ENSSHAG00000016207	XRN1	100	81.024	ENSCAFG00020009120	XRN1	96	87.143	Canis_lupus_dingo
ENSSHAG00000016207	XRN1	99	80.538	ENSCHIG00000019192	XRN1	98	80.655	Capra_hircus
ENSSHAG00000016207	XRN1	100	80.721	ENSTSYG00000002705	XRN1	99	80.899	Carlito_syrichta
ENSSHAG00000016207	XRN1	100	81.528	ENSCCAG00000034800	XRN1	96	89.604	Cebus_capucinus
ENSSHAG00000016207	XRN1	100	81.657	ENSCATG00000041794	XRN1	99	81.904	Cercocebus_atys
ENSSHAG00000016207	XRN1	100	79.113	ENSCLAG00000001451	XRN1	96	89.769	Chinchilla_lanigera
ENSSHAG00000016207	XRN1	100	81.716	ENSCSAG00000011265	XRN1	99	81.963	Chlorocebus_sabaeus
ENSSHAG00000016207	XRN1	60	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSSHAG00000016207	XRN1	69	44.171	ENSCSAVG00000008584	-	96	43.651	Ciona_savignyi
ENSSHAG00000016207	XRN1	100	81.587	ENSCANG00000037495	XRN1	96	89.934	Colobus_angolensis_palliatus
ENSSHAG00000016207	XRN1	100	78.696	ENSCGRG00001019411	Xrn1	96	88.449	Cricetulus_griseus_chok1gshd
ENSSHAG00000016207	XRN1	100	78.696	ENSCGRG00000012464	Xrn1	96	88.449	Cricetulus_griseus_crigri
ENSSHAG00000016207	XRN1	100	55.339	ENSCSEG00000021285	xrn1	96	76.645	Cynoglossus_semilaevis
ENSSHAG00000016207	XRN1	66	67.745	ENSCVAG00000013089	xrn1	97	72.383	Cyprinodon_variegatus
ENSSHAG00000016207	XRN1	99	61.292	ENSDARG00000091652	xrn1	98	81.184	Danio_rerio
ENSSHAG00000016207	XRN1	100	77.862	ENSDORG00000013833	Xrn1	99	78.094	Dipodomys_ordii
ENSSHAG00000016207	XRN1	75	39.097	FBgn0020261	pcm	76	38.854	Drosophila_melanogaster
ENSSHAG00000016207	XRN1	87	92.793	ENSETEG00000003978	XRN1	88	92.742	Echinops_telfairi
ENSSHAG00000016207	XRN1	100	81.420	ENSEASG00005002687	XRN1	98	87.833	Equus_asinus_asinus
ENSSHAG00000016207	XRN1	100	81.420	ENSECAG00000008301	XRN1	99	81.775	Equus_caballus
ENSSHAG00000016207	XRN1	92	78.034	ENSEEUG00000011323	XRN1	91	78.557	Erinaceus_europaeus
ENSSHAG00000016207	XRN1	100	60.971	ENSELUG00000000169	xrn1	99	60.971	Esox_lucius
ENSSHAG00000016207	XRN1	100	76.818	ENSFCAG00000027589	XRN1	93	91.628	Felis_catus
ENSSHAG00000016207	XRN1	100	76.722	ENSFALG00000007021	XRN1	99	76.266	Ficedula_albicollis
ENSSHAG00000016207	XRN1	100	79.697	ENSFDAG00000020494	XRN1	96	89.439	Fukomys_damarensis
ENSSHAG00000016207	XRN1	84	67.519	ENSGMOG00000006396	xrn1	82	68.116	Gadus_morhua
ENSSHAG00000016207	XRN1	100	76.980	ENSGALG00000002706	XRN1	99	76.581	Gallus_gallus
ENSSHAG00000016207	XRN1	100	59.211	ENSGACG00000014328	xrn1	99	59.323	Gasterosteus_aculeatus
ENSSHAG00000016207	XRN1	94	81.415	ENSGAGG00000017535	XRN1	98	81.046	Gopherus_agassizii
ENSSHAG00000016207	XRN1	100	81.609	ENSGGOG00000008047	XRN1	99	81.727	Gorilla_gorilla
ENSSHAG00000016207	XRN1	95	68.203	ENSHBUG00000005908	xrn1	98	73.457	Haplochromis_burtoni
ENSSHAG00000016207	XRN1	100	80.012	ENSHGLG00000014476	XRN1	97	89.769	Heterocephalus_glaber_female
ENSSHAG00000016207	XRN1	100	80.070	ENSHGLG00100015130	XRN1	97	89.769	Heterocephalus_glaber_male
ENSSHAG00000016207	XRN1	96	70.337	ENSHCOG00000014062	xrn1	98	70.419	Hippocampus_comes
ENSSHAG00000016207	XRN1	99	67.036	ENSIPUG00000015229	xrn1	98	67.010	Ictalurus_punctatus
ENSSHAG00000016207	XRN1	100	80.675	ENSSTOG00000013552	XRN1	97	89.439	Ictidomys_tridecemlineatus
ENSSHAG00000016207	XRN1	99	78.121	ENSJJAG00000010863	Xrn1	99	88.024	Jaculus_jaculus
ENSSHAG00000016207	XRN1	100	57.632	ENSKMAG00000021356	xrn1	94	75.899	Kryptolebias_marmoratus
ENSSHAG00000016207	XRN1	100	59.507	ENSLBEG00000018656	xrn1	94	76.860	Labrus_bergylta
ENSSHAG00000016207	XRN1	100	70.636	ENSLACG00000009020	XRN1	99	70.405	Latimeria_chalumnae
ENSSHAG00000016207	XRN1	100	65.250	ENSLOCG00000007944	xrn1	99	65.076	Lepisosteus_oculatus
ENSSHAG00000016207	XRN1	62	88.782	ENSLAFG00000015426	XRN1	98	89.176	Loxodonta_africana
ENSSHAG00000016207	XRN1	100	81.775	ENSMFAG00000032599	XRN1	99	82.022	Macaca_fascicularis
ENSSHAG00000016207	XRN1	100	81.716	ENSMMUG00000014038	XRN1	99	81.963	Macaca_mulatta
ENSSHAG00000016207	XRN1	100	81.598	ENSMNEG00000034217	XRN1	99	81.893	Macaca_nemestrina
ENSSHAG00000016207	XRN1	94	69.509	ENSMAMG00000013219	xrn1	92	78.361	Mastacembelus_armatus
ENSSHAG00000016207	XRN1	100	59.132	ENSMZEG00005015099	xrn1	98	59.055	Maylandia_zebra
ENSSHAG00000016207	XRN1	100	77.106	ENSMGAG00000006333	XRN1	99	76.641	Meleagris_gallopavo
ENSSHAG00000016207	XRN1	100	81.582	ENSMICG00000048948	XRN1	99	81.877	Microcebus_murinus
ENSSHAG00000016207	XRN1	57	88.119	ENSMOCG00000008665	Xrn1	97	88.119	Microtus_ochrogaster
ENSSHAG00000016207	XRN1	100	93.022	ENSMODG00000021236	XRN1	99	93.199	Monodelphis_domestica
ENSSHAG00000016207	XRN1	93	65.705	ENSMALG00000004098	xrn1	97	65.946	Monopterus_albus
ENSSHAG00000016207	XRN1	100	71.529	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSSHAG00000016207	XRN1	100	77.979	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSSHAG00000016207	XRN1	100	77.908	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSSHAG00000016207	XRN1	100	77.862	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSSHAG00000016207	XRN1	100	81.834	ENSMPUG00000012040	XRN1	99	82.189	Mustela_putorius_furo
ENSSHAG00000016207	XRN1	100	79.522	ENSMLUG00000016885	XRN1	99	79.522	Myotis_lucifugus
ENSSHAG00000016207	XRN1	57	86.000	ENSNGAG00000023964	Xrn1	97	86.000	Nannospalax_galili
ENSSHAG00000016207	XRN1	100	81.183	ENSNLEG00000004726	XRN1	99	81.490	Nomascus_leucogenys
ENSSHAG00000016207	XRN1	72	100.000	ENSMEUG00000014473	-	72	100.000	Notamacropus_eugenii
ENSSHAG00000016207	XRN1	79	75.748	ENSOPRG00000007337	-	77	77.409	Ochotona_princeps
ENSSHAG00000016207	XRN1	100	59.782	ENSONIG00000016673	xrn1	98	64.173	Oreochromis_niloticus
ENSSHAG00000016207	XRN1	93	80.177	ENSOANG00000006735	XRN1	100	80.177	Ornithorhynchus_anatinus
ENSSHAG00000016207	XRN1	100	79.827	ENSOCUG00000001861	XRN1	99	79.884	Oryctolagus_cuniculus
ENSSHAG00000016207	XRN1	94	70.427	ENSORLG00000013005	xrn1	97	60.820	Oryzias_latipes
ENSSHAG00000016207	XRN1	94	70.897	ENSORLG00020005559	xrn1	99	60.860	Oryzias_latipes_hni
ENSSHAG00000016207	XRN1	100	59.943	ENSORLG00015022523	xrn1	89	70.840	Oryzias_latipes_hsok
ENSSHAG00000016207	XRN1	93	71.797	ENSOMEG00000015397	xrn1	98	71.963	Oryzias_melastigma
ENSSHAG00000016207	XRN1	100	79.112	ENSOGAG00000000170	XRN1	99	79.172	Otolemur_garnettii
ENSSHAG00000016207	XRN1	99	81.743	ENSOARG00000006343	XRN1	98	81.802	Ovis_aries
ENSSHAG00000016207	XRN1	100	81.587	ENSPPAG00000010180	XRN1	99	81.797	Pan_paniscus
ENSSHAG00000016207	XRN1	100	80.840	ENSPPRG00000007125	XRN1	99	81.195	Panthera_pardus
ENSSHAG00000016207	XRN1	100	80.840	ENSPTIG00000021081	XRN1	99	81.195	Panthera_tigris_altaica
ENSSHAG00000016207	XRN1	100	81.646	ENSPTRG00000015482	XRN1	99	81.856	Pan_troglodytes
ENSSHAG00000016207	XRN1	100	81.834	ENSPANG00000010638	XRN1	99	81.845	Papio_anubis
ENSSHAG00000016207	XRN1	100	78.402	ENSPSIG00000018050	XRN1	99	78.344	Pelodiscus_sinensis
ENSSHAG00000016207	XRN1	56	77.595	ENSPMGG00000002648	xrn1	95	77.265	Periophthalmus_magnuspinnatus
ENSSHAG00000016207	XRN1	57	88.449	ENSPEMG00000020610	Xrn1	96	88.449	Peromyscus_maniculatus_bairdii
ENSSHAG00000016207	XRN1	66	50.253	ENSPMAG00000002975	xrn1	91	77.522	Petromyzon_marinus
ENSSHAG00000016207	XRN1	100	94.365	ENSPCIG00000028735	XRN1	97	97.025	Phascolarctos_cinereus
ENSSHAG00000016207	XRN1	90	64.300	ENSPFOG00000013932	xrn1	97	64.188	Poecilia_formosa
ENSSHAG00000016207	XRN1	90	63.777	ENSPLAG00000021653	xrn1	97	63.860	Poecilia_latipinna
ENSSHAG00000016207	XRN1	88	64.267	ENSPMEG00000003076	xrn1	93	64.399	Poecilia_mexicana
ENSSHAG00000016207	XRN1	100	59.932	ENSPREG00000021147	xrn1	99	59.920	Poecilia_reticulata
ENSSHAG00000016207	XRN1	100	81.313	ENSPPYG00000014172	XRN1	99	81.431	Pongo_abelii
ENSSHAG00000016207	XRN1	92	75.290	ENSPCAG00000005638	XRN1	100	75.290	Procavia_capensis
ENSSHAG00000016207	XRN1	100	81.517	ENSPCOG00000013089	XRN1	97	89.801	Propithecus_coquereli
ENSSHAG00000016207	XRN1	96	85.297	ENSPVAG00000016265	XRN1	94	85.297	Pteropus_vampyrus
ENSSHAG00000016207	XRN1	95	68.721	ENSPNYG00000010570	xrn1	98	64.960	Pundamilia_nyererei
ENSSHAG00000016207	XRN1	99	60.349	ENSPNAG00000023531	xrn1	98	60.233	Pygocentrus_nattereri
ENSSHAG00000016207	XRN1	100	77.946	ENSRNOG00000042951	Xrn1	99	77.946	Rattus_norvegicus
ENSSHAG00000016207	XRN1	100	81.479	ENSRBIG00000041227	XRN1	99	81.727	Rhinopithecus_bieti
ENSSHAG00000016207	XRN1	66	54.678	YGL173C	XRN1	79	33.707	Saccharomyces_cerevisiae
ENSSHAG00000016207	XRN1	100	81.291	ENSSBOG00000029561	XRN1	99	81.350	Saimiri_boliviensis_boliviensis
ENSSHAG00000016207	XRN1	100	60.278	ENSSFOG00015024211	xrn1	98	60.220	Scleropages_formosus
ENSSHAG00000016207	XRN1	97	68.140	ENSSMAG00000016534	xrn1	98	68.196	Scophthalmus_maximus
ENSSHAG00000016207	XRN1	89	71.547	ENSSDUG00000010306	xrn1	94	72.611	Seriola_dumerili
ENSSHAG00000016207	XRN1	94	70.669	ENSSLDG00000021543	xrn1	98	70.669	Seriola_lalandi_dorsalis
ENSSHAG00000016207	XRN1	66	87.179	ENSSARG00000007741	-	82	87.179	Sorex_araneus
ENSSHAG00000016207	XRN1	100	78.496	ENSTGUG00000008498	XRN1	99	78.143	Taeniopygia_guttata
ENSSHAG00000016207	XRN1	94	68.285	ENSTRUG00000004895	xrn1	99	74.239	Takifugu_rubripes
ENSSHAG00000016207	XRN1	100	57.833	ENSTNIG00000017615	xrn1	99	57.176	Tetraodon_nigroviridis
ENSSHAG00000016207	XRN1	85	93.931	ENSTBEG00000003256	XRN1	87	81.833	Tupaia_belangeri
ENSSHAG00000016207	XRN1	100	78.390	ENSTTRG00000012914	XRN1	99	78.508	Tursiops_truncatus
ENSSHAG00000016207	XRN1	100	80.189	ENSUAMG00000001608	XRN1	99	85.726	Ursus_americanus
ENSSHAG00000016207	XRN1	100	81.845	ENSUMAG00000013625	XRN1	99	82.318	Ursus_maritimus
ENSSHAG00000016207	XRN1	100	78.415	ENSVPAG00000004690	XRN1	99	78.770	Vicugna_pacos
ENSSHAG00000016207	XRN1	100	81.953	ENSVVUG00000024461	XRN1	99	88.511	Vulpes_vulpes
ENSSHAG00000016207	XRN1	100	69.565	ENSXETG00000000619	xrn1	93	88.858	Xenopus_tropicalis
ENSSHAG00000016207	XRN1	92	71.642	ENSXCOG00000007917	xrn1	94	71.808	Xiphophorus_couchianus
ENSSHAG00000016207	XRN1	92	71.500	ENSXMAG00000018320	xrn1	96	71.917	Xiphophorus_maculatus