EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000016463 (Gene tree)
Gene ID: 100932973
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 59856 bases
Position: chrGL861628.1:2182450-2242305
Accession: 100932973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000019381	PRP4	PF08799.11	3.9e-13	1	1
ENSSHAP00000019382	PRP4	PF08799.11	3.9e-13	1	1
ENSSHAP00000019382	Prp18	PF02840.15	1e-62	1	1
ENSSHAP00000019381	Prp18	PF02840.15	1e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000019538	-	3650	-	ENSSHAP00000019381	342 (aa)	XP_012406341	G3WVC6
ENSSHAT00000019539	-	3538	-	ENSSHAP00000019382	342 (aa)	-	G3WVC7

Gene Model

Click here to download ENSSHAG00000016463's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000016463's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000016463	-	100	78.947	ENSSHAG00000009669	-	100	78.947

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000016463	-	100	96.784	ENSG00000165630	PRPF18	100	96.784	Homo_sapiens
ENSSHAG00000016463	-	100	85.380	ENSAPOG00000024177	prpf18	100	85.380	Acanthochromis_polyacanthus
ENSSHAG00000016463	-	100	96.199	ENSAMEG00000013591	-	100	96.199	Ailuropoda_melanoleuca
ENSSHAG00000016463	-	100	85.088	ENSACIG00000001186	prpf18	100	85.088	Amphilophus_citrinellus
ENSSHAG00000016463	-	98	85.075	ENSAOCG00000006572	prpf18	94	83.041	Amphiprion_ocellaris
ENSSHAG00000016463	-	100	85.380	ENSAPEG00000004564	prpf18	100	85.380	Amphiprion_percula
ENSSHAG00000016463	-	100	83.918	ENSATEG00000000303	prpf18	100	83.918	Anabas_testudineus
ENSSHAG00000016463	-	99	92.647	ENSAPLG00000003387	-	99	92.647	Anas_platyrhynchos
ENSSHAG00000016463	-	100	91.860	ENSACAG00000000818	-	100	91.860	Anolis_carolinensis
ENSSHAG00000016463	-	100	96.199	ENSANAG00000037445	-	100	96.199	Aotus_nancymaae
ENSSHAG00000016463	-	100	84.211	ENSACLG00000026296	prpf18	100	84.211	Astatotilapia_calliptera
ENSSHAG00000016463	-	100	84.571	ENSAMXG00000012848	prpf18	100	84.571	Astyanax_mexicanus
ENSSHAG00000016463	-	100	95.906	ENSBTAG00000017244	PRPF18	100	95.906	Bos_taurus
ENSSHAG00000016463	-	98	36.494	WBGene00009320	F32B6.3	97	36.494	Caenorhabditis_elegans
ENSSHAG00000016463	-	100	96.199	ENSCJAG00000009432	-	100	96.199	Callithrix_jacchus
ENSSHAG00000016463	-	100	96.199	ENSCAFG00000004735	-	100	96.199	Canis_familiaris
ENSSHAG00000016463	-	100	96.199	ENSCAFG00020007712	-	100	96.199	Canis_lupus_dingo
ENSSHAG00000016463	-	100	95.906	ENSCHIG00000000499	-	100	95.906	Capra_hircus
ENSSHAG00000016463	-	100	95.906	ENSTSYG00000003517	-	100	95.906	Carlito_syrichta
ENSSHAG00000016463	-	100	96.784	ENSCPOG00000021069	-	100	96.784	Cavia_porcellus
ENSSHAG00000016463	-	100	96.199	ENSCCAG00000036822	-	100	96.199	Cebus_capucinus
ENSSHAG00000016463	-	100	85.965	ENSCATG00000016633	-	100	85.965	Cercocebus_atys
ENSSHAG00000016463	-	100	96.199	ENSCLAG00000011770	-	100	96.199	Chinchilla_lanigera
ENSSHAG00000016463	-	100	94.302	ENSCSAG00000013109	-	100	94.302	Chlorocebus_sabaeus
ENSSHAG00000016463	-	100	89.888	ENSCPBG00000003100	-	100	90.449	Chrysemys_picta_bellii
ENSSHAG00000016463	-	99	54.118	ENSCING00000020481	-	97	54.118	Ciona_intestinalis
ENSSHAG00000016463	-	99	54.046	ENSCSAVG00000010546	-	99	53.890	Ciona_savignyi
ENSSHAG00000016463	-	100	96.491	ENSCANG00000034900	-	100	96.491	Colobus_angolensis_palliatus
ENSSHAG00000016463	-	100	96.784	ENSCGRG00001023665	Prpf18	100	96.784	Cricetulus_griseus_chok1gshd
ENSSHAG00000016463	-	100	96.784	ENSCGRG00000014690	Prpf18	100	96.784	Cricetulus_griseus_crigri
ENSSHAG00000016463	-	100	82.749	ENSCSEG00000005536	prpf18	99	82.749	Cynoglossus_semilaevis
ENSSHAG00000016463	-	100	83.918	ENSCVAG00000012401	prpf18	100	83.918	Cyprinodon_variegatus
ENSSHAG00000016463	-	100	84.503	ENSDARG00000058306	prpf18	100	84.503	Danio_rerio
ENSSHAG00000016463	-	100	96.491	ENSDNOG00000035607	-	100	96.491	Dasypus_novemcinctus
ENSSHAG00000016463	-	100	95.906	ENSDORG00000000858	Prpf18	100	95.906	Dipodomys_ordii
ENSSHAG00000016463	-	99	51.032	FBgn0027784	Prp18	98	50.737	Drosophila_melanogaster
ENSSHAG00000016463	-	100	85.965	ENSETEG00000015060	-	100	85.965	Echinops_telfairi
ENSSHAG00000016463	-	100	66.859	ENSEBUG00000016502	prpf18	99	65.994	Eptatretus_burgeri
ENSSHAG00000016463	-	100	96.491	ENSEASG00005019373	-	100	96.491	Equus_asinus_asinus
ENSSHAG00000016463	-	100	96.491	ENSECAG00000006997	PRPF18	100	96.491	Equus_caballus
ENSSHAG00000016463	-	92	60.759	ENSEEUG00000001171	-	100	60.759	Erinaceus_europaeus
ENSSHAG00000016463	-	100	83.382	ENSELUG00000022190	prpf18	100	83.382	Esox_lucius
ENSSHAG00000016463	-	100	95.906	ENSFCAG00000004436	-	100	95.906	Felis_catus
ENSSHAG00000016463	-	92	88.991	ENSFALG00000001912	-	97	90.154	Ficedula_albicollis
ENSSHAG00000016463	-	94	97.500	ENSFDAG00000014026	-	100	97.500	Fukomys_damarensis
ENSSHAG00000016463	-	99	63.188	ENSFDAG00000010713	-	97	63.188	Fukomys_damarensis
ENSSHAG00000016463	-	80	88.645	ENSFHEG00000020125	prpf18	98	88.764	Fundulus_heteroclitus
ENSSHAG00000016463	-	99	79.765	ENSGMOG00000012210	prpf18	99	79.765	Gadus_morhua
ENSSHAG00000016463	-	100	93.567	ENSGALG00000043593	-	100	93.567	Gallus_gallus
ENSSHAG00000016463	-	100	83.626	ENSGAFG00000006034	prpf18	100	83.626	Gambusia_affinis
ENSSHAG00000016463	-	100	83.041	ENSGACG00000012232	prpf18	100	83.041	Gasterosteus_aculeatus
ENSSHAG00000016463	-	100	93.567	ENSGAGG00000016878	-	100	93.567	Gopherus_agassizii
ENSSHAG00000016463	-	92	96.835	ENSGGOG00000025188	-	96	96.835	Gorilla_gorilla
ENSSHAG00000016463	-	100	84.211	ENSHBUG00000010264	prpf18	100	84.211	Haplochromis_burtoni
ENSSHAG00000016463	-	100	96.199	ENSHGLG00000018534	PRPF18	100	96.199	Heterocephalus_glaber_female
ENSSHAG00000016463	-	94	97.812	ENSHGLG00100012161	-	98	97.812	Heterocephalus_glaber_male
ENSSHAG00000016463	-	100	83.918	ENSHCOG00000015987	prpf18	100	83.918	Hippocampus_comes
ENSSHAG00000016463	-	100	81.586	ENSIPUG00000007432	prpf18	100	82.436	Ictalurus_punctatus
ENSSHAG00000016463	-	100	95.614	ENSSTOG00000008735	-	100	95.614	Ictidomys_tridecemlineatus
ENSSHAG00000016463	-	100	96.784	ENSJJAG00000024041	-	100	96.784	Jaculus_jaculus
ENSSHAG00000016463	-	100	71.137	ENSJJAG00000015191	-	100	71.137	Jaculus_jaculus
ENSSHAG00000016463	-	100	83.333	ENSKMAG00000012124	prpf18	100	83.333	Kryptolebias_marmoratus
ENSSHAG00000016463	-	100	81.579	ENSLBEG00000028466	prpf18	99	83.832	Labrus_bergylta
ENSSHAG00000016463	-	100	87.135	ENSLACG00000009885	prpf18	100	87.135	Latimeria_chalumnae
ENSSHAG00000016463	-	100	90.643	ENSLOCG00000016736	prpf18	100	90.643	Lepisosteus_oculatus
ENSSHAG00000016463	-	100	96.784	ENSLAFG00000007753	-	100	96.784	Loxodonta_africana
ENSSHAG00000016463	-	100	96.784	ENSMFAG00000000540	-	100	96.784	Macaca_fascicularis
ENSSHAG00000016463	-	100	96.784	ENSMMUG00000015071	PRPF18	100	96.784	Macaca_mulatta
ENSSHAG00000016463	-	100	96.784	ENSMNEG00000024679	-	100	96.784	Macaca_nemestrina
ENSSHAG00000016463	-	100	81.579	ENSMLEG00000031715	-	100	81.579	Mandrillus_leucophaeus
ENSSHAG00000016463	-	100	83.626	ENSMAMG00000006610	prpf18	100	83.626	Mastacembelus_armatus
ENSSHAG00000016463	-	100	84.211	ENSMZEG00005019392	prpf18	100	84.211	Maylandia_zebra
ENSSHAG00000016463	-	100	93.567	ENSMGAG00000005023	-	100	93.567	Meleagris_gallopavo
ENSSHAG00000016463	-	100	96.491	ENSMICG00000006572	-	100	96.491	Microcebus_murinus
ENSSHAG00000016463	-	100	96.784	ENSMOCG00000021468	Prpf18	100	96.784	Microtus_ochrogaster
ENSSHAG00000016463	-	100	83.918	ENSMMOG00000013012	prpf18	100	83.918	Mola_mola
ENSSHAG00000016463	-	99	91.379	ENSMODG00000016902	-	95	91.379	Monodelphis_domestica
ENSSHAG00000016463	-	100	86.257	ENSMODG00000024043	-	100	86.257	Monodelphis_domestica
ENSSHAG00000016463	-	100	77.457	ENSMALG00000005486	prpf18	100	77.746	Monopterus_albus
ENSSHAG00000016463	-	100	96.199	MGP_CAROLIEiJ_G0023143	Prpf18	100	98.630	Mus_caroli
ENSSHAG00000016463	-	100	95.906	ENSMUSG00000039449	Prpf18	100	98.630	Mus_musculus
ENSSHAG00000016463	-	100	96.491	MGP_PahariEiJ_G0019203	Prpf18	100	98.630	Mus_pahari
ENSSHAG00000016463	-	100	95.614	MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	Mus_spretus
ENSSHAG00000016463	-	100	95.906	ENSMPUG00000000938	-	100	95.906	Mustela_putorius_furo
ENSSHAG00000016463	-	100	95.906	ENSMLUG00000009200	-	100	95.906	Myotis_lucifugus
ENSSHAG00000016463	-	100	96.199	ENSNGAG00000012500	-	100	96.199	Nannospalax_galili
ENSSHAG00000016463	-	67	91.304	ENSNGAG00000023550	-	82	91.304	Nannospalax_galili
ENSSHAG00000016463	-	100	84.211	ENSNBRG00000001778	prpf18	100	84.211	Neolamprologus_brichardi
ENSSHAG00000016463	-	100	96.784	ENSNLEG00000012186	-	100	96.784	Nomascus_leucogenys
ENSSHAG00000016463	-	100	67.836	ENSMEUG00000005032	-	100	67.836	Notamacropus_eugenii
ENSSHAG00000016463	-	77	78.113	ENSOPRG00000002153	-	100	78.113	Ochotona_princeps
ENSSHAG00000016463	-	100	96.491	ENSODEG00000003770	-	100	96.491	Octodon_degus
ENSSHAG00000016463	-	98	84.776	ENSONIG00000014854	prpf18	96	84.776	Oreochromis_niloticus
ENSSHAG00000016463	-	100	96.491	ENSOANG00000015404	-	100	96.491	Ornithorhynchus_anatinus
ENSSHAG00000016463	-	100	96.491	ENSOCUG00000027756	-	96	96.942	Oryctolagus_cuniculus
ENSSHAG00000016463	-	100	82.286	ENSORLG00000010293	prpf18	100	82.286	Oryzias_latipes
ENSSHAG00000016463	-	100	83.918	ENSORLG00020001530	prpf18	100	83.918	Oryzias_latipes_hni
ENSSHAG00000016463	-	100	83.626	ENSORLG00015013705	prpf18	100	83.626	Oryzias_latipes_hsok
ENSSHAG00000016463	-	100	85.380	ENSOMEG00000009167	prpf18	100	85.380	Oryzias_melastigma
ENSSHAG00000016463	-	100	95.906	ENSOGAG00000007294	-	100	95.906	Otolemur_garnettii
ENSSHAG00000016463	-	100	93.447	ENSOARG00000006243	-	100	93.447	Ovis_aries
ENSSHAG00000016463	-	100	96.784	ENSPPAG00000041959	-	100	96.784	Pan_paniscus
ENSSHAG00000016463	-	100	95.906	ENSPPRG00000000107	-	100	95.906	Panthera_pardus
ENSSHAG00000016463	-	100	96.199	ENSPTIG00000021094	-	100	96.199	Panthera_tigris_altaica
ENSSHAG00000016463	-	100	96.784	ENSPTRG00000002306	PRPF18	100	96.784	Pan_troglodytes
ENSSHAG00000016463	-	100	96.491	ENSPANG00000023346	-	100	96.491	Papio_anubis
ENSSHAG00000016463	-	86	98.113	ENSPKIG00000014128	prpf18	96	83.476	Paramormyrops_kingsleyae
ENSSHAG00000016463	-	100	93.567	ENSPSIG00000016064	-	100	93.567	Pelodiscus_sinensis
ENSSHAG00000016463	-	100	78.655	ENSPMGG00000016486	prpf18	100	78.655	Periophthalmus_magnuspinnatus
ENSSHAG00000016463	-	100	96.491	ENSPEMG00000013704	Prpf18	100	96.491	Peromyscus_maniculatus_bairdii
ENSSHAG00000016463	-	100	73.410	ENSPMAG00000000204	prpf18	100	73.410	Petromyzon_marinus
ENSSHAG00000016463	-	92	100.000	ENSPCIG00000012963	-	99	100.000	Phascolarctos_cinereus
ENSSHAG00000016463	-	100	82.000	ENSPFOG00000017611	prpf18	100	82.000	Poecilia_formosa
ENSSHAG00000016463	-	100	83.333	ENSPLAG00000000369	prpf18	100	83.333	Poecilia_latipinna
ENSSHAG00000016463	-	100	83.333	ENSPMEG00000005183	prpf18	100	83.333	Poecilia_mexicana
ENSSHAG00000016463	-	100	83.333	ENSPREG00000015232	prpf18	100	83.333	Poecilia_reticulata
ENSSHAG00000016463	-	100	96.491	ENSPPYG00000002101	PRPF18	100	96.491	Pongo_abelii
ENSSHAG00000016463	-	100	78.363	ENSPCAG00000010833	-	100	78.363	Procavia_capensis
ENSSHAG00000016463	-	100	89.766	ENSPCOG00000013057	-	93	98.639	Propithecus_coquereli
ENSSHAG00000016463	-	100	59.064	ENSPVAG00000002947	-	100	59.064	Pteropus_vampyrus
ENSSHAG00000016463	-	100	83.918	ENSPNYG00000003554	prpf18	100	83.918	Pundamilia_nyererei
ENSSHAG00000016463	-	100	85.185	ENSPNAG00000023151	prpf18	100	85.185	Pygocentrus_nattereri
ENSSHAG00000016463	-	100	96.491	ENSRNOG00000018396	Prpf18	100	96.491	Rattus_norvegicus
ENSSHAG00000016463	-	100	96.199	ENSRBIG00000028028	-	100	96.199	Rhinopithecus_bieti
ENSSHAG00000016463	-	100	96.491	ENSRROG00000040695	-	100	96.491	Rhinopithecus_roxellana
ENSSHAG00000016463	-	100	96.199	ENSSBOG00000034482	-	100	96.199	Saimiri_boliviensis_boliviensis
ENSSHAG00000016463	-	77	44.528	ENSSFOG00015021154	-	89	48.927	Scleropages_formosus
ENSSHAG00000016463	-	98	81.739	ENSSFOG00015022118	prpf18	100	76.945	Scleropages_formosus
ENSSHAG00000016463	-	100	83.041	ENSSMAG00000005308	prpf18	100	83.041	Scophthalmus_maximus
ENSSHAG00000016463	-	100	85.088	ENSSDUG00000015428	prpf18	100	85.088	Seriola_dumerili
ENSSHAG00000016463	-	100	85.088	ENSSLDG00000023989	prpf18	100	85.088	Seriola_lalandi_dorsalis
ENSSHAG00000016463	-	100	65.789	ENSSARG00000005307	-	100	65.789	Sorex_araneus
ENSSHAG00000016463	-	100	93.567	ENSSPUG00000002619	-	100	93.567	Sphenodon_punctatus
ENSSHAG00000016463	-	100	85.380	ENSSPAG00000019502	prpf18	100	85.380	Stegastes_partitus
ENSSHAG00000016463	-	100	96.199	ENSSSCG00000026354	-	100	96.199	Sus_scrofa
ENSSHAG00000016463	-	100	92.982	ENSTGUG00000002286	-	100	92.982	Taeniopygia_guttata
ENSSHAG00000016463	-	100	82.456	ENSTRUG00000011278	prpf18	100	82.456	Takifugu_rubripes
ENSSHAG00000016463	-	100	82.749	ENSTNIG00000000911	prpf18	100	82.749	Tetraodon_nigroviridis
ENSSHAG00000016463	-	79	98.718	ENSTBEG00000013011	-	79	98.718	Tupaia_belangeri
ENSSHAG00000016463	-	100	96.491	ENSTTRG00000011117	PRPF18	100	96.491	Tursiops_truncatus
ENSSHAG00000016463	-	98	92.262	ENSUAMG00000001815	-	93	98.392	Ursus_americanus
ENSSHAG00000016463	-	100	91.520	ENSUMAG00000012329	-	100	91.520	Ursus_maritimus
ENSSHAG00000016463	-	100	90.643	ENSVPAG00000011486	-	100	90.643	Vicugna_pacos
ENSSHAG00000016463	-	100	96.199	ENSVVUG00000005453	-	100	96.199	Vulpes_vulpes
ENSSHAG00000016463	-	100	80.870	ENSXETG00000024057	prpf18	100	80.870	Xenopus_tropicalis
ENSSHAG00000016463	-	100	83.140	ENSXCOG00000020414	prpf18	100	83.140	Xiphophorus_couchianus
ENSSHAG00000016463	-	100	83.626	ENSXMAG00000004713	prpf18	91	83.626	Xiphophorus_maculatus