EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000016888 (Gene tree)
Gene ID: 100921211
Gene Symbol: POP4
Alias: RPP29
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 10158 bases
Position: chrGL834645.1:2396892-2407049
Accession: 30081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000019900	UPF0086	PF01868.16	3.8e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000020057	POP4-201	663	-	ENSSHAP00000019900	220 (aa)	-	G3WWU5

Gene Model

Click here to download ENSSHAG00000016888's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03008	Ribosome biogenesis in eukaryotes	KEGG
shr03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000016888's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000016888	POP4	99	78.899	ENSG00000105171	POP4	100	94.792	Homo_sapiens
ENSSHAG00000016888	POP4	99	66.968	ENSAMEG00000003172	-	99	66.968	Ailuropoda_melanoleuca
ENSSHAG00000016888	POP4	99	77.169	ENSAMEG00000018329	-	99	77.169	Ailuropoda_melanoleuca
ENSSHAG00000016888	POP4	99	58.716	ENSACIG00000008358	pop4	99	58.716	Amphilophus_citrinellus
ENSSHAG00000016888	POP4	90	61.692	ENSAOCG00000010116	pop4	98	61.692	Amphiprion_ocellaris
ENSSHAG00000016888	POP4	94	60.577	ENSAPEG00000002829	pop4	87	60.577	Amphiprion_percula
ENSSHAG00000016888	POP4	94	61.244	ENSATEG00000013028	pop4	94	61.244	Anabas_testudineus
ENSSHAG00000016888	POP4	92	74.752	ENSAPLG00000014051	POP4	98	74.752	Anas_platyrhynchos
ENSSHAG00000016888	POP4	98	79.630	ENSANAG00000020295	POP4	98	79.630	Aotus_nancymaae
ENSSHAG00000016888	POP4	99	58.716	ENSACLG00000000526	pop4	99	58.716	Astatotilapia_calliptera
ENSSHAG00000016888	POP4	98	59.070	ENSAMXG00000002899	pop4	98	59.070	Astyanax_mexicanus
ENSSHAG00000016888	POP4	99	82.110	ENSBTAG00000002223	POP4	99	82.110	Bos_taurus
ENSSHAG00000016888	POP4	98	78.802	ENSCJAG00000046750	POP4	96	86.705	Callithrix_jacchus
ENSSHAG00000016888	POP4	83	80.220	ENSCAFG00000007630	POP4	100	80.220	Canis_familiaris
ENSSHAG00000016888	POP4	99	80.734	ENSCHIG00000016743	POP4	99	80.734	Capra_hircus
ENSSHAG00000016888	POP4	99	79.358	ENSTSYG00000003488	POP4	99	79.358	Carlito_syrichta
ENSSHAG00000016888	POP4	99	56.682	ENSCAPG00000011105	POP4	100	56.682	Cavia_aperea
ENSSHAG00000016888	POP4	99	77.523	ENSCPOG00000002992	POP4	99	77.523	Cavia_porcellus
ENSSHAG00000016888	POP4	98	80.556	ENSCCAG00000020285	-	98	80.556	Cebus_capucinus
ENSSHAG00000016888	POP4	98	68.519	ENSCCAG00000034244	-	98	68.519	Cebus_capucinus
ENSSHAG00000016888	POP4	99	79.358	ENSCATG00000036022	POP4	100	94.792	Cercocebus_atys
ENSSHAG00000016888	POP4	99	76.606	ENSCLAG00000013162	POP4	99	76.606	Chinchilla_lanigera
ENSSHAG00000016888	POP4	99	80.275	ENSCSAG00000004868	POP4	100	80.275	Chlorocebus_sabaeus
ENSSHAG00000016888	POP4	98	59.722	ENSCHOG00000002071	POP4	99	59.722	Choloepus_hoffmanni
ENSSHAG00000016888	POP4	99	74.312	ENSCPBG00000016132	POP4	99	74.312	Chrysemys_picta_bellii
ENSSHAG00000016888	POP4	87	32.323	ENSCING00000023871	-	97	33.333	Ciona_intestinalis
ENSSHAG00000016888	POP4	89	83.163	ENSCANG00000005924	POP4	97	83.163	Colobus_angolensis_palliatus
ENSSHAG00000016888	POP4	99	74.312	ENSCGRG00001017185	Pop4	99	76.147	Cricetulus_griseus_chok1gshd
ENSSHAG00000016888	POP4	99	74.312	ENSCGRG00000008155	Pop4	99	76.147	Cricetulus_griseus_crigri
ENSSHAG00000016888	POP4	94	53.365	ENSCSEG00000002946	pop4	94	53.846	Cynoglossus_semilaevis
ENSSHAG00000016888	POP4	93	45.631	ENSCVAG00000018602	POP4	88	45.631	Cyprinodon_variegatus
ENSSHAG00000016888	POP4	93	65.534	ENSDARG00000101472	pop4	93	66.019	Danio_rerio
ENSSHAG00000016888	POP4	99	80.184	ENSDNOG00000047663	POP4	87	80.184	Dasypus_novemcinctus
ENSSHAG00000016888	POP4	78	70.930	ENSDORG00000008577	Pop4	100	70.930	Dipodomys_ordii
ENSSHAG00000016888	POP4	75	36.571	FBgn0035831	CG8038	83	36.571	Drosophila_melanogaster
ENSSHAG00000016888	POP4	99	65.438	ENSETEG00000003607	POP4	100	65.438	Echinops_telfairi
ENSSHAG00000016888	POP4	91	45.794	ENSEBUG00000010447	pop4	83	45.794	Eptatretus_burgeri
ENSSHAG00000016888	POP4	98	41.014	ENSEBUG00000008575	pop4	98	41.014	Eptatretus_burgeri
ENSSHAG00000016888	POP4	98	39.301	ENSEBUG00000004305	pop4	98	39.301	Eptatretus_burgeri
ENSSHAG00000016888	POP4	99	88.462	ENSECAG00000020206	POP4	81	88.462	Equus_caballus
ENSSHAG00000016888	POP4	91	59.500	ENSEEUG00000013109	POP4	100	59.500	Erinaceus_europaeus
ENSSHAG00000016888	POP4	99	59.633	ENSELUG00000019812	pop4	99	59.633	Esox_lucius
ENSSHAG00000016888	POP4	99	77.982	ENSFCAG00000001619	POP4	99	77.982	Felis_catus
ENSSHAG00000016888	POP4	98	72.222	ENSFALG00000000206	POP4	96	72.222	Ficedula_albicollis
ENSSHAG00000016888	POP4	99	76.606	ENSFDAG00000017859	POP4	99	76.606	Fukomys_damarensis
ENSSHAG00000016888	POP4	92	53.883	ENSFHEG00000012745	pop4	93	53.883	Fundulus_heteroclitus
ENSSHAG00000016888	POP4	87	61.340	ENSGMOG00000000335	pop4	96	61.340	Gadus_morhua
ENSSHAG00000016888	POP4	99	72.018	ENSGALG00000041972	POP4	92	72.018	Gallus_gallus
ENSSHAG00000016888	POP4	78	49.425	ENSGAFG00000003571	pop4	96	49.425	Gambusia_affinis
ENSSHAG00000016888	POP4	99	57.534	ENSGACG00000014510	pop4	93	65.698	Gasterosteus_aculeatus
ENSSHAG00000016888	POP4	99	75.115	ENSGAGG00000024544	POP4	78	75.115	Gopherus_agassizii
ENSSHAG00000016888	POP4	99	79.909	ENSGGOG00000038346	POP4	99	79.909	Gorilla_gorilla
ENSSHAG00000016888	POP4	99	58.716	ENSHBUG00000021821	pop4	99	58.716	Haplochromis_burtoni
ENSSHAG00000016888	POP4	99	76.256	ENSHGLG00000015798	POP4	99	76.256	Heterocephalus_glaber_female
ENSSHAG00000016888	POP4	99	76.037	ENSHGLG00100009737	POP4	99	76.037	Heterocephalus_glaber_male
ENSSHAG00000016888	POP4	94	63.333	ENSHCOG00000020937	pop4	94	63.333	Hippocampus_comes
ENSSHAG00000016888	POP4	95	61.058	ENSIPUG00000013652	pop4	95	61.058	Ictalurus_punctatus
ENSSHAG00000016888	POP4	99	79.817	ENSSTOG00000011016	POP4	99	79.817	Ictidomys_tridecemlineatus
ENSSHAG00000016888	POP4	100	78.182	ENSJJAG00000013376	Pop4	99	78.440	Jaculus_jaculus
ENSSHAG00000016888	POP4	98	59.633	ENSKMAG00000012250	pop4	98	59.633	Kryptolebias_marmoratus
ENSSHAG00000016888	POP4	99	54.091	ENSLBEG00000018846	-	99	55.000	Labrus_bergylta
ENSSHAG00000016888	POP4	99	54.091	ENSLBEG00000014139	pop4	99	55.000	Labrus_bergylta
ENSSHAG00000016888	POP4	99	67.281	ENSLACG00000008581	POP4	98	67.281	Latimeria_chalumnae
ENSSHAG00000016888	POP4	98	69.444	ENSLOCG00000005597	pop4	99	69.124	Lepisosteus_oculatus
ENSSHAG00000016888	POP4	99	77.880	ENSLAFG00000000084	POP4	99	77.880	Loxodonta_africana
ENSSHAG00000016888	POP4	99	79.817	ENSMFAG00000029606	POP4	99	79.817	Macaca_fascicularis
ENSSHAG00000016888	POP4	99	78.082	ENSMMUG00000017424	POP4	99	78.995	Macaca_mulatta
ENSSHAG00000016888	POP4	99	78.082	ENSMNEG00000031374	POP4	99	78.995	Macaca_nemestrina
ENSSHAG00000016888	POP4	99	79.358	ENSMLEG00000043454	POP4	99	79.358	Mandrillus_leucophaeus
ENSSHAG00000016888	POP4	99	59.545	ENSMAMG00000011716	pop4	99	59.545	Mastacembelus_armatus
ENSSHAG00000016888	POP4	99	58.716	ENSMZEG00005002360	pop4	99	58.716	Maylandia_zebra
ENSSHAG00000016888	POP4	99	72.018	ENSMGAG00000005337	POP4	97	72.018	Meleagris_gallopavo
ENSSHAG00000016888	POP4	99	77.064	ENSMAUG00000020110	Pop4	99	77.064	Mesocricetus_auratus
ENSSHAG00000016888	POP4	99	76.712	ENSMICG00000035730	POP4	98	76.712	Microcebus_murinus
ENSSHAG00000016888	POP4	94	59.903	ENSMMOG00000015321	pop4	99	58.257	Mola_mola
ENSSHAG00000016888	POP4	98	91.204	ENSMODG00000029406	POP4	94	91.204	Monodelphis_domestica
ENSSHAG00000016888	POP4	99	61.009	ENSMALG00000012571	pop4	99	61.009	Monopterus_albus
ENSSHAG00000016888	POP4	98	75.576	MGP_CAROLIEiJ_G0029600	Pop4	98	76.959	Mus_caroli
ENSSHAG00000016888	POP4	98	76.037	ENSMUSG00000030423	Pop4	98	76.037	Mus_musculus
ENSSHAG00000016888	POP4	98	75.463	MGP_SPRETEiJ_G0030699	Pop4	98	75.926	Mus_spretus
ENSSHAG00000016888	POP4	99	66.055	ENSMPUG00000008063	-	99	66.055	Mustela_putorius_furo
ENSSHAG00000016888	POP4	99	76.147	ENSMPUG00000008041	-	99	76.147	Mustela_putorius_furo
ENSSHAG00000016888	POP4	99	61.364	ENSMLUG00000010774	POP4	99	61.364	Myotis_lucifugus
ENSSHAG00000016888	POP4	57	88.800	ENSMEUG00000003636	-	100	88.800	Notamacropus_eugenii
ENSSHAG00000016888	POP4	91	80.000	ENSOPRG00000004736	POP4	100	80.000	Ochotona_princeps
ENSSHAG00000016888	POP4	99	75.115	ENSODEG00000013025	POP4	100	75.943	Octodon_degus
ENSSHAG00000016888	POP4	99	59.174	ENSONIG00000003458	pop4	97	59.174	Oreochromis_niloticus
ENSSHAG00000016888	POP4	99	78.440	ENSOCUG00000015974	POP4	99	78.440	Oryctolagus_cuniculus
ENSSHAG00000016888	POP4	90	59.701	ENSORLG00000020317	pop4	91	59.701	Oryzias_latipes
ENSSHAG00000016888	POP4	99	56.818	ENSORLG00015011624	pop4	99	56.818	Oryzias_latipes_hsok
ENSSHAG00000016888	POP4	94	59.135	ENSOMEG00000002538	pop4	93	59.135	Oryzias_melastigma
ENSSHAG00000016888	POP4	99	77.982	ENSOGAG00000011168	POP4	99	77.982	Otolemur_garnettii
ENSSHAG00000016888	POP4	99	80.365	ENSOARG00000004041	POP4	99	80.365	Ovis_aries
ENSSHAG00000016888	POP4	99	79.358	ENSPPAG00000040372	POP4	99	79.358	Pan_paniscus
ENSSHAG00000016888	POP4	99	77.982	ENSPPRG00000010502	POP4	99	77.982	Panthera_pardus
ENSSHAG00000016888	POP4	99	77.982	ENSPTIG00000016598	POP4	99	77.982	Panthera_tigris_altaica
ENSSHAG00000016888	POP4	99	79.358	ENSPTRG00000010779	POP4	99	79.358	Pan_troglodytes
ENSSHAG00000016888	POP4	99	79.817	ENSPANG00000008546	POP4	99	79.817	Papio_anubis
ENSSHAG00000016888	POP4	90	63.942	ENSPKIG00000004468	pop4	88	67.164	Paramormyrops_kingsleyae
ENSSHAG00000016888	POP4	99	76.606	ENSPSIG00000015690	POP4	100	78.713	Pelodiscus_sinensis
ENSSHAG00000016888	POP4	90	56.863	ENSPMGG00000008608	pop4	98	57.843	Periophthalmus_magnuspinnatus
ENSSHAG00000016888	POP4	99	62.385	ENSPEMG00000019982	-	100	62.385	Peromyscus_maniculatus_bairdii
ENSSHAG00000016888	POP4	99	76.606	ENSPEMG00000014034	-	95	76.606	Peromyscus_maniculatus_bairdii
ENSSHAG00000016888	POP4	66	68.966	ENSPMAG00000006265	pop4	100	57.071	Petromyzon_marinus
ENSSHAG00000016888	POP4	99	90.323	ENSPCIG00000024738	POP4	94	90.323	Phascolarctos_cinereus
ENSSHAG00000016888	POP4	98	54.839	ENSPFOG00000000925	pop4	98	54.839	Poecilia_formosa
ENSSHAG00000016888	POP4	90	58.911	ENSPLAG00000003161	pop4	91	58.911	Poecilia_latipinna
ENSSHAG00000016888	POP4	98	54.839	ENSPMEG00000002475	pop4	98	54.839	Poecilia_mexicana
ENSSHAG00000016888	POP4	92	56.158	ENSPREG00000022403	pop4	88	56.158	Poecilia_reticulata
ENSSHAG00000016888	POP4	99	79.817	ENSPPYG00000009805	POP4	99	79.817	Pongo_abelii
ENSSHAG00000016888	POP4	98	72.222	ENSPCAG00000007737	POP4	98	72.222	Procavia_capensis
ENSSHAG00000016888	POP4	99	77.982	ENSPCOG00000018055	POP4	99	77.982	Propithecus_coquereli
ENSSHAG00000016888	POP4	98	75.463	ENSPVAG00000006069	POP4	98	75.463	Pteropus_vampyrus
ENSSHAG00000016888	POP4	99	59.174	ENSPNYG00000020038	pop4	99	59.174	Pundamilia_nyererei
ENSSHAG00000016888	POP4	95	60.766	ENSPNAG00000005591	pop4	95	60.766	Pygocentrus_nattereri
ENSSHAG00000016888	POP4	99	75.799	ENSRNOG00000027646	Pop4	99	76.712	Rattus_norvegicus
ENSSHAG00000016888	POP4	80	73.714	ENSRBIG00000044769	POP4	89	78.986	Rhinopithecus_bieti
ENSSHAG00000016888	POP4	99	79.358	ENSRROG00000028903	POP4	99	79.358	Rhinopithecus_roxellana
ENSSHAG00000016888	POP4	57	34.532	YBR257W	-	50	34.532	Saccharomyces_cerevisiae
ENSSHAG00000016888	POP4	99	80.734	ENSSBOG00000032445	POP4	99	80.734	Saimiri_boliviensis_boliviensis
ENSSHAG00000016888	POP4	95	65.238	ENSSFOG00015014556	pop4	94	65.238	Scleropages_formosus
ENSSHAG00000016888	POP4	94	61.244	ENSSMAG00000016611	pop4	99	61.137	Scophthalmus_maximus
ENSSHAG00000016888	POP4	94	60.766	ENSSDUG00000019865	pop4	84	60.766	Seriola_dumerili
ENSSHAG00000016888	POP4	94	60.766	ENSSLDG00000001763	pop4	93	60.766	Seriola_lalandi_dorsalis
ENSSHAG00000016888	POP4	99	78.802	ENSSARG00000004748	POP4	100	78.802	Sorex_araneus
ENSSHAG00000016888	POP4	94	62.981	ENSSPAG00000014364	pop4	93	62.981	Stegastes_partitus
ENSSHAG00000016888	POP4	99	80.734	ENSSSCG00000002854	POP4	99	80.734	Sus_scrofa
ENSSHAG00000016888	POP4	90	75.879	ENSTGUG00000008953	POP4	99	75.879	Taeniopygia_guttata
ENSSHAG00000016888	POP4	92	57.143	ENSTNIG00000006401	pop4	100	58.621	Tetraodon_nigroviridis
ENSSHAG00000016888	POP4	99	77.626	ENSTBEG00000002194	POP4	99	79.909	Tupaia_belangeri
ENSSHAG00000016888	POP4	99	81.193	ENSTTRG00000005882	POP4	99	81.193	Tursiops_truncatus
ENSSHAG00000016888	POP4	99	76.606	ENSUAMG00000003049	-	99	76.606	Ursus_americanus
ENSSHAG00000016888	POP4	99	76.606	ENSUMAG00000007522	-	99	76.606	Ursus_maritimus
ENSSHAG00000016888	POP4	92	78.218	ENSVVUG00000016876	-	71	78.218	Vulpes_vulpes
ENSSHAG00000016888	POP4	99	68.493	ENSXETG00000017598	pop4	99	68.493	Xenopus_tropicalis
ENSSHAG00000016888	POP4	87	58.247	ENSXCOG00000017695	pop4	83	58.247	Xiphophorus_couchianus
ENSSHAG00000016888	POP4	87	58.247	ENSXMAG00000013862	pop4	83	58.247	Xiphophorus_maculatus