EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000016999 (Gene tree)
Gene ID: 100930951
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 90559 bases
Position: chrGL849609.1:2448141-2538699
Accession: 100930951
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000020039	R3H	PF01424.22	1.4e-11	1	1
ENSSHAP00000020038	R3H	PF01424.22	1.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000020198	R3HDM1-202	3402	-	ENSSHAP00000020039	1049 (aa)	XP_012400140	G3WX84
ENSSHAT00000020197	R3HDM1-201	3528	-	ENSSHAP00000020038	1091 (aa)	-	G3WX83

Gene Model

Click here to download ENSSHAG00000016999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000016999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000016999	R3HDM1	99	46.470	ENSSHAG00000003511	R3HDM2	99	49.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000016999	R3HDM1	100	84.344	ENSG00000048991	R3HDM1	99	87.584	Homo_sapiens
ENSSHAG00000016999	R3HDM1	89	47.335	ENSAPOG00000020850	r3hdm1	97	46.950	Acanthochromis_polyacanthus
ENSSHAG00000016999	R3HDM1	100	85.339	ENSAMEG00000014886	R3HDM1	100	85.430	Ailuropoda_melanoleuca
ENSSHAG00000016999	R3HDM1	89	46.310	ENSAOCG00000005192	r3hdm1	99	46.432	Amphiprion_ocellaris
ENSSHAG00000016999	R3HDM1	88	47.952	ENSAPEG00000016108	r3hdm1	99	48.096	Amphiprion_percula
ENSSHAG00000016999	R3HDM1	88	47.231	ENSATEG00000000232	r3hdm1	99	47.681	Anabas_testudineus
ENSSHAG00000016999	R3HDM1	100	82.894	ENSAPLG00000015231	R3HDM1	100	82.712	Anas_platyrhynchos
ENSSHAG00000016999	R3HDM1	100	78.892	ENSACAG00000001676	R3HDM1	100	79.244	Anolis_carolinensis
ENSSHAG00000016999	R3HDM1	100	84.629	ENSANAG00000035334	R3HDM1	100	84.539	Aotus_nancymaae
ENSSHAG00000016999	R3HDM1	88	48.185	ENSACLG00000027282	r3hdm1	99	47.984	Astatotilapia_calliptera
ENSSHAG00000016999	R3HDM1	93	70.862	ENSAMXG00000012861	R3HDM1	100	61.996	Astyanax_mexicanus
ENSSHAG00000016999	R3HDM1	64	38.658	ENSAMXG00000020587	arpp21	88	37.772	Astyanax_mexicanus
ENSSHAG00000016999	R3HDM1	88	71.779	ENSAMXG00000003536	r3hdm1	100	63.023	Astyanax_mexicanus
ENSSHAG00000016999	R3HDM1	100	82.514	ENSBTAG00000013302	R3HDM1	100	82.798	Bos_taurus
ENSSHAG00000016999	R3HDM1	100	84.511	ENSCJAG00000011718	R3HDM1	100	84.420	Callithrix_jacchus
ENSSHAG00000016999	R3HDM1	100	85.611	ENSCAFG00000005075	R3HDM1	100	85.701	Canis_familiaris
ENSSHAG00000016999	R3HDM1	100	85.520	ENSCAFG00020016119	R3HDM1	99	87.500	Canis_lupus_dingo
ENSSHAG00000016999	R3HDM1	100	85.155	ENSCHIG00000020851	R3HDM1	100	85.155	Capra_hircus
ENSSHAG00000016999	R3HDM1	100	80.246	ENSCPOG00000012784	R3HDM1	100	84.053	Cavia_porcellus
ENSSHAG00000016999	R3HDM1	100	84.072	ENSCCAG00000027199	R3HDM1	100	83.982	Cebus_capucinus
ENSSHAG00000016999	R3HDM1	100	84.072	ENSCATG00000023642	R3HDM1	100	83.891	Cercocebus_atys
ENSSHAG00000016999	R3HDM1	100	79.895	ENSCLAG00000007962	R3HDM1	100	85.762	Chinchilla_lanigera
ENSSHAG00000016999	R3HDM1	100	81.738	ENSCSAG00000016356	R3HDM1	100	81.563	Chlorocebus_sabaeus
ENSSHAG00000016999	R3HDM1	81	86.260	ENSCHOG00000013638	R3HDM1	81	86.260	Choloepus_hoffmanni
ENSSHAG00000016999	R3HDM1	91	83.904	ENSCPBG00000009645	R3HDM1	100	91.912	Chrysemys_picta_bellii
ENSSHAG00000016999	R3HDM1	100	84.087	ENSCANG00000034748	R3HDM1	100	83.906	Colobus_angolensis_palliatus
ENSSHAG00000016999	R3HDM1	99	79.912	ENSCGRG00001012357	R3hdm1	97	79.824	Cricetulus_griseus_chok1gshd
ENSSHAG00000016999	R3HDM1	99	82.305	ENSCGRG00000012080	R3hdm1	100	85.762	Cricetulus_griseus_crigri
ENSSHAG00000016999	R3HDM1	83	44.580	ENSCSEG00000008944	r3hdm1	93	53.402	Cynoglossus_semilaevis
ENSSHAG00000016999	R3HDM1	89	47.206	ENSCVAG00000007582	r3hdm1	99	46.809	Cyprinodon_variegatus
ENSSHAG00000016999	R3HDM1	100	81.736	ENSDNOG00000000771	R3HDM1	100	81.826	Dasypus_novemcinctus
ENSSHAG00000016999	R3HDM1	100	75.408	ENSETEG00000013606	R3HDM1	100	75.681	Echinops_telfairi
ENSSHAG00000016999	R3HDM1	66	41.601	ENSEBUG00000014746	arpp21	97	43.586	Eptatretus_burgeri
ENSSHAG00000016999	R3HDM1	100	86.376	ENSEASG00005007392	R3HDM1	100	86.376	Equus_asinus_asinus
ENSSHAG00000016999	R3HDM1	100	86.310	ENSECAG00000019114	R3HDM1	100	86.310	Equus_caballus
ENSSHAG00000016999	R3HDM1	86	78.049	ENSEEUG00000012589	R3HDM1	84	78.049	Erinaceus_europaeus
ENSSHAG00000016999	R3HDM1	94	56.673	ENSELUG00000004909	R3HDM1	99	56.682	Esox_lucius
ENSSHAG00000016999	R3HDM1	93	52.839	ENSELUG00000014413	r3hdm1	100	52.589	Esox_lucius
ENSSHAG00000016999	R3HDM1	100	85.559	ENSFCAG00000027113	R3HDM1	100	85.649	Felis_catus
ENSSHAG00000016999	R3HDM1	91	76.757	ENSFALG00000013731	R3HDM1	93	70.833	Ficedula_albicollis
ENSSHAG00000016999	R3HDM1	100	79.912	ENSFDAG00000016478	R3HDM1	99	88.398	Fukomys_damarensis
ENSSHAG00000016999	R3HDM1	89	46.369	ENSFHEG00000018713	r3hdm1	100	47.288	Fundulus_heteroclitus
ENSSHAG00000016999	R3HDM1	63	61.145	ENSGMOG00000006042	-	74	64.795	Gadus_morhua
ENSSHAG00000016999	R3HDM1	87	85.294	ENSGALG00000012246	R3HDM1	99	85.294	Gallus_gallus
ENSSHAG00000016999	R3HDM1	88	47.422	ENSGAFG00000006203	r3hdm1	99	47.624	Gambusia_affinis
ENSSHAG00000016999	R3HDM1	86	47.610	ENSGACG00000014925	r3hdm1	99	46.935	Gasterosteus_aculeatus
ENSSHAG00000016999	R3HDM1	100	82.026	ENSGAGG00000007840	R3HDM1	100	81.478	Gopherus_agassizii
ENSSHAG00000016999	R3HDM1	100	84.434	ENSGGOG00000008156	R3HDM1	100	84.253	Gorilla_gorilla
ENSSHAG00000016999	R3HDM1	100	80.282	ENSHGLG00000015718	R3HDM1	99	88.029	Heterocephalus_glaber_female
ENSSHAG00000016999	R3HDM1	100	64.934	ENSHGLG00100015374	-	100	65.028	Heterocephalus_glaber_male
ENSSHAG00000016999	R3HDM1	100	80.106	ENSHGLG00100003184	-	100	85.430	Heterocephalus_glaber_male
ENSSHAG00000016999	R3HDM1	88	43.532	ENSHCOG00000013366	r3hdm1	88	59.500	Hippocampus_comes
ENSSHAG00000016999	R3HDM1	88	60.436	ENSIPUG00000001676	R3HDM1	99	60.372	Ictalurus_punctatus
ENSSHAG00000016999	R3HDM1	93	62.274	ENSIPUG00000013629	r3hdm1	94	70.032	Ictalurus_punctatus
ENSSHAG00000016999	R3HDM1	100	84.615	ENSSTOG00000007572	R3HDM1	99	89.871	Ictidomys_tridecemlineatus
ENSSHAG00000016999	R3HDM1	95	73.723	ENSLACG00000005334	R3HDM1	100	74.220	Latimeria_chalumnae
ENSSHAG00000016999	R3HDM1	100	67.864	ENSLOCG00000001641	r3hdm1	100	67.325	Lepisosteus_oculatus
ENSSHAG00000016999	R3HDM1	100	82.410	ENSLAFG00000009065	R3HDM1	100	82.410	Loxodonta_africana
ENSSHAG00000016999	R3HDM1	100	84.253	ENSMFAG00000030331	R3HDM1	100	84.072	Macaca_fascicularis
ENSSHAG00000016999	R3HDM1	100	84.072	ENSMMUG00000009844	R3HDM1	100	83.891	Macaca_mulatta
ENSSHAG00000016999	R3HDM1	100	84.163	ENSMNEG00000027793	R3HDM1	100	83.982	Macaca_nemestrina
ENSSHAG00000016999	R3HDM1	100	84.344	ENSMLEG00000043189	R3HDM1	100	84.163	Mandrillus_leucophaeus
ENSSHAG00000016999	R3HDM1	89	47.927	ENSMAMG00000004532	r3hdm1	92	57.884	Mastacembelus_armatus
ENSSHAG00000016999	R3HDM1	89	48.359	ENSMZEG00005003157	r3hdm1	92	58.091	Maylandia_zebra
ENSSHAG00000016999	R3HDM1	100	81.569	ENSMGAG00000012461	R3HDM1	100	81.387	Meleagris_gallopavo
ENSSHAG00000016999	R3HDM1	100	80.035	ENSMAUG00000010315	R3hdm1	100	86.093	Mesocricetus_auratus
ENSSHAG00000016999	R3HDM1	88	88.472	ENSMICG00000042655	-	100	89.835	Microcebus_murinus
ENSSHAG00000016999	R3HDM1	100	83.469	ENSMICG00000005900	-	100	90.110	Microcebus_murinus
ENSSHAG00000016999	R3HDM1	50	87.293	ENSMOCG00000019833	-	100	85.762	Microtus_ochrogaster
ENSSHAG00000016999	R3HDM1	90	90.848	ENSMODG00000000923	R3HDM1	97	90.848	Monodelphis_domestica
ENSSHAG00000016999	R3HDM1	99	46.288	ENSMALG00000009000	r3hdm1	99	46.060	Monopterus_albus
ENSSHAG00000016999	R3HDM1	100	80.035	MGP_CAROLIEiJ_G0014543	R3hdm1	100	90.417	Mus_caroli
ENSSHAG00000016999	R3HDM1	100	79.507	ENSMUSG00000056211	R3hdm1	100	90.417	Mus_musculus
ENSSHAG00000016999	R3HDM1	100	79.332	MGP_PahariEiJ_G0027779	R3hdm1	100	90.417	Mus_pahari
ENSSHAG00000016999	R3HDM1	100	79.683	MGP_SPRETEiJ_G0015350	R3hdm1	100	90.417	Mus_spretus
ENSSHAG00000016999	R3HDM1	100	85.494	ENSMPUG00000002412	R3HDM1	100	85.585	Mustela_putorius_furo
ENSSHAG00000016999	R3HDM1	100	84.116	ENSMLUG00000013824	R3HDM1	100	83.935	Myotis_lucifugus
ENSSHAG00000016999	R3HDM1	100	84.253	ENSNLEG00000008622	R3HDM1	100	84.072	Nomascus_leucogenys
ENSSHAG00000016999	R3HDM1	84	97.143	ENSMEUG00000011784	R3HDM1	95	97.143	Notamacropus_eugenii
ENSSHAG00000016999	R3HDM1	100	79.262	ENSODEG00000008607	R3HDM1	100	87.086	Octodon_degus
ENSSHAG00000016999	R3HDM1	95	47.736	ENSONIG00000012017	r3hdm1	98	47.553	Oreochromis_niloticus
ENSSHAG00000016999	R3HDM1	100	85.182	ENSOANG00000007987	R3HDM1	100	85.364	Ornithorhynchus_anatinus
ENSSHAG00000016999	R3HDM1	89	83.570	ENSOCUG00000017366	R3HDM1	98	83.570	Oryctolagus_cuniculus
ENSSHAG00000016999	R3HDM1	88	45.714	ENSORLG00000004297	r3hdm1	99	45.612	Oryzias_latipes
ENSSHAG00000016999	R3HDM1	89	46.334	ENSORLG00015017355	r3hdm1	100	45.691	Oryzias_latipes_hsok
ENSSHAG00000016999	R3HDM1	100	84.120	ENSOGAG00000003136	R3HDM1	100	84.211	Otolemur_garnettii
ENSSHAG00000016999	R3HDM1	100	85.141	ENSOARG00000010788	R3HDM1	100	85.141	Ovis_aries
ENSSHAG00000016999	R3HDM1	100	84.192	ENSPPAG00000027858	R3HDM1	100	84.011	Pan_paniscus
ENSSHAG00000016999	R3HDM1	100	85.377	ENSPPRG00000002626	R3HDM1	100	90.934	Panthera_pardus
ENSSHAG00000016999	R3HDM1	100	85.468	ENSPTIG00000016581	R3HDM1	100	91.209	Panthera_tigris_altaica
ENSSHAG00000016999	R3HDM1	100	84.101	ENSPTRG00000012494	R3HDM1	100	83.921	Pan_troglodytes
ENSSHAG00000016999	R3HDM1	100	84.344	ENSPANG00000026448	R3HDM1	100	84.163	Papio_anubis
ENSSHAG00000016999	R3HDM1	91	68.785	ENSPKIG00000004328	r3hdm1	91	76.433	Paramormyrops_kingsleyae
ENSSHAG00000016999	R3HDM1	100	81.768	ENSPSIG00000012915	R3HDM1	100	81.677	Pelodiscus_sinensis
ENSSHAG00000016999	R3HDM1	100	79.947	ENSPEMG00000015187	R3hdm1	100	85.762	Peromyscus_maniculatus_bairdii
ENSSHAG00000016999	R3HDM1	87	44.275	ENSPMAG00000003369	-	98	45.203	Petromyzon_marinus
ENSSHAG00000016999	R3HDM1	100	97.901	ENSPCIG00000002491	R3HDM1	100	97.901	Phascolarctos_cinereus
ENSSHAG00000016999	R3HDM1	89	46.211	ENSPFOG00000015036	r3hdm1	99	45.938	Poecilia_formosa
ENSSHAG00000016999	R3HDM1	88	47.422	ENSPLAG00000018042	r3hdm1	99	47.571	Poecilia_latipinna
ENSSHAG00000016999	R3HDM1	88	47.619	ENSPMEG00000023947	r3hdm1	99	47.720	Poecilia_mexicana
ENSSHAG00000016999	R3HDM1	89	48.155	ENSPREG00000007902	r3hdm1	88	62.233	Poecilia_reticulata
ENSSHAG00000016999	R3HDM1	100	83.183	ENSPPYG00000012815	R3HDM1	100	83.002	Pongo_abelii
ENSSHAG00000016999	R3HDM1	95	81.744	ENSPCAG00000006208	R3HDM1	95	82.834	Procavia_capensis
ENSSHAG00000016999	R3HDM1	100	81.826	ENSPCOG00000012698	R3HDM1	100	81.736	Propithecus_coquereli
ENSSHAG00000016999	R3HDM1	100	76.784	ENSPVAG00000006098	R3HDM1	100	76.694	Pteropus_vampyrus
ENSSHAG00000016999	R3HDM1	88	71.472	ENSPNAG00000013952	r3hdm1	100	63.318	Pygocentrus_nattereri
ENSSHAG00000016999	R3HDM1	63	39.087	ENSPNAG00000004162	arpp21	87	38.429	Pygocentrus_nattereri
ENSSHAG00000016999	R3HDM1	100	78.716	ENSRNOG00000004099	R3hdm1	100	78.414	Rattus_norvegicus
ENSSHAG00000016999	R3HDM1	100	83.363	ENSRBIG00000033317	R3HDM1	100	83.934	Rhinopithecus_bieti
ENSSHAG00000016999	R3HDM1	100	83.816	ENSRROG00000034534	R3HDM1	100	84.087	Rhinopithecus_roxellana
ENSSHAG00000016999	R3HDM1	100	84.887	ENSSBOG00000020389	R3HDM1	100	84.796	Saimiri_boliviensis_boliviensis
ENSSHAG00000016999	R3HDM1	100	62.489	ENSSFOG00015014134	r3hdm1	100	62.579	Scleropages_formosus
ENSSHAG00000016999	R3HDM1	100	58.244	ENSSFOG00015019851	-	96	63.889	Scleropages_formosus
ENSSHAG00000016999	R3HDM1	99	44.120	ENSSMAG00000001669	r3hdm1	99	44.110	Scophthalmus_maximus
ENSSHAG00000016999	R3HDM1	89	46.679	ENSSDUG00000010749	r3hdm1	99	47.024	Seriola_dumerili
ENSSHAG00000016999	R3HDM1	99	46.459	ENSSLDG00000004499	r3hdm1	99	46.500	Seriola_lalandi_dorsalis
ENSSHAG00000016999	R3HDM1	70	79.470	ENSSARG00000000352	-	69	79.470	Sorex_araneus
ENSSHAG00000016999	R3HDM1	100	84.307	ENSSPUG00000004167	R3HDM1	100	84.307	Sphenodon_punctatus
ENSSHAG00000016999	R3HDM1	89	48.430	ENSSPAG00000004648	r3hdm1	99	49.116	Stegastes_partitus
ENSSHAG00000016999	R3HDM1	100	85.209	ENSSSCG00000015692	R3HDM1	100	85.209	Sus_scrofa
ENSSHAG00000016999	R3HDM1	100	76.937	ENSTGUG00000011750	R3HDM1	100	76.572	Taeniopygia_guttata
ENSSHAG00000016999	R3HDM1	88	45.581	ENSTRUG00000011654	r3hdm1	99	45.644	Takifugu_rubripes
ENSSHAG00000016999	R3HDM1	83	47.252	ENSTNIG00000010362	r3hdm1	95	47.548	Tetraodon_nigroviridis
ENSSHAG00000016999	R3HDM1	100	79.527	ENSTTRG00000003935	R3HDM1	100	79.527	Tursiops_truncatus
ENSSHAG00000016999	R3HDM1	70	85.843	ENSUAMG00000024806	R3HDM1	99	89.134	Ursus_americanus
ENSSHAG00000016999	R3HDM1	100	84.072	ENSUMAG00000005552	R3HDM1	100	84.166	Ursus_maritimus
ENSSHAG00000016999	R3HDM1	97	82.456	ENSVPAG00000007333	R3HDM1	93	82.456	Vicugna_pacos
ENSSHAG00000016999	R3HDM1	100	85.028	ENSVVUG00000006457	R3HDM1	100	85.122	Vulpes_vulpes
ENSSHAG00000016999	R3HDM1	89	69.685	ENSXETG00000019330	r3hdm1	100	69.583	Xenopus_tropicalis
ENSSHAG00000016999	R3HDM1	69	50.130	ENSXCOG00000017448	r3hdm1	96	49.500	Xiphophorus_couchianus
ENSSHAG00000016999	R3HDM1	88	47.363	ENSXMAG00000007885	r3hdm1	99	46.075	Xiphophorus_maculatus