EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000017072 (Gene tree)
Gene ID: 100922084
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Plus strand
Length: 118228 bases
Position: chrGL834627.1:2490407-2608634
Accession: 19057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000020123	ResIII	PF04851.15	4.3e-08	1	1
ENSSHAP00000020124	ResIII	PF04851.15	4.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000020284	CHD6-202	8166	-	ENSSHAP00000020124	2721 (aa)	-	G3WXG9
ENSSHAT00000020283	CHD6-201	9734	-	ENSSHAP00000020123	2663 (aa)	-	G3WXG8

Gene Model

Click here to download ENSSHAG00000017072's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000017072's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000017072	CHD6	79	63.182	ENSSHAG00000002719	CHD9	65	65.330
ENSSHAG00000017072	CHD6	67	61.806	ENSSHAG00000008118	CHD8	65	63.570
ENSSHAG00000017072	CHD6	76	67.614	ENSSHAG00000011522	CHD7	73	65.291

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000017072	CHD6	100	80.528	ENSG00000124177	CHD6	99	96.525	Homo_sapiens
ENSSHAG00000017072	CHD6	75	75.099	ENSAPOG00000013736	chd6	65	75.230	Acanthochromis_polyacanthus
ENSSHAG00000017072	CHD6	99	80.198	ENSAMEG00000009496	CHD6	99	80.198	Ailuropoda_melanoleuca
ENSSHAG00000017072	CHD6	74	75.495	ENSATEG00000005608	chd6	64	75.894	Anabas_testudineus
ENSSHAG00000017072	CHD6	93	81.226	ENSAPLG00000015592	CHD6	99	74.448	Anas_platyrhynchos
ENSSHAG00000017072	CHD6	99	69.565	ENSACAG00000006842	CHD6	99	69.307	Anolis_carolinensis
ENSSHAG00000017072	CHD6	100	79.993	ENSANAG00000037548	CHD6	99	91.560	Aotus_nancymaae
ENSSHAG00000017072	CHD6	80	71.313	ENSAMXG00000009576	chd6	74	73.193	Astyanax_mexicanus
ENSSHAG00000017072	CHD6	99	77.880	ENSBTAG00000005733	CHD6	99	77.439	Bos_taurus
ENSSHAG00000017072	CHD6	100	80.169	ENSCJAG00000017920	CHD6	99	91.743	Callithrix_jacchus
ENSSHAG00000017072	CHD6	99	80.198	ENSCAFG00000009236	CHD6	99	79.794	Canis_familiaris
ENSSHAG00000017072	CHD6	99	80.221	ENSCAFG00020012906	CHD6	95	94.208	Canis_lupus_dingo
ENSSHAG00000017072	CHD6	99	77.872	ENSCHIG00000017606	CHD6	100	77.154	Capra_hircus
ENSSHAG00000017072	CHD6	84	79.624	ENSTSYG00000014635	CHD6	100	79.624	Carlito_syrichta
ENSSHAG00000017072	CHD6	100	78.967	ENSCPOG00000015641	CHD6	100	78.527	Cavia_porcellus
ENSSHAG00000017072	CHD6	100	80.242	ENSCCAG00000036828	CHD6	99	91.560	Cebus_capucinus
ENSSHAG00000017072	CHD6	100	80.462	ENSCATG00000039248	CHD6	99	91.560	Cercocebus_atys
ENSSHAG00000017072	CHD6	100	79.539	ENSCLAG00000013743	CHD6	100	79.026	Chinchilla_lanigera
ENSSHAG00000017072	CHD6	100	80.682	ENSCSAG00000013997	CHD6	100	80.169	Chlorocebus_sabaeus
ENSSHAG00000017072	CHD6	91	83.652	ENSCHOG00000012647	CHD6	95	83.608	Choloepus_hoffmanni
ENSSHAG00000017072	CHD6	99	76.141	ENSCPBG00000019382	CHD6	99	76.096	Chrysemys_picta_bellii
ENSSHAG00000017072	CHD6	100	80.718	ENSCANG00000043435	CHD6	99	91.560	Colobus_angolensis_palliatus
ENSSHAG00000017072	CHD6	100	78.320	ENSCGRG00001002694	Chd6	100	77.615	Cricetulus_griseus_chok1gshd
ENSSHAG00000017072	CHD6	82	74.244	ENSDARG00000017244	chd6	75	78.065	Danio_rerio
ENSSHAG00000017072	CHD6	99	79.655	ENSDNOG00000004176	CHD6	99	79.245	Dasypus_novemcinctus
ENSSHAG00000017072	CHD6	99	80.221	ENSEASG00005023433	CHD6	95	95.946	Equus_asinus_asinus
ENSSHAG00000017072	CHD6	99	80.309	ENSECAG00000011761	CHD6	99	79.904	Equus_caballus
ENSSHAG00000017072	CHD6	72	80.352	ENSELUG00000012309	chd6	92	80.536	Esox_lucius
ENSSHAG00000017072	CHD6	99	80.125	ENSFCAG00000003572	CHD6	99	79.721	Felis_catus
ENSSHAG00000017072	CHD6	99	72.842	ENSFALG00000012563	CHD6	99	72.655	Ficedula_albicollis
ENSSHAG00000017072	CHD6	99	79.691	ENSFDAG00000013791	CHD6	99	79.176	Fukomys_damarensis
ENSSHAG00000017072	CHD6	73	69.764	ENSGMOG00000011715	chd6	85	69.907	Gadus_morhua
ENSSHAG00000017072	CHD6	76	71.681	ENSGACG00000000037	chd6	81	73.342	Gasterosteus_aculeatus
ENSSHAG00000017072	CHD6	100	80.491	ENSGGOG00000013123	CHD6	99	91.560	Gorilla_gorilla
ENSSHAG00000017072	CHD6	77	72.073	ENSHBUG00000014701	chd6	66	75.050	Haplochromis_burtoni
ENSSHAG00000017072	CHD6	100	79.384	ENSHGLG00000004548	CHD6	100	78.797	Heterocephalus_glaber_female
ENSSHAG00000017072	CHD6	100	79.384	ENSHGLG00100006401	CHD6	100	78.797	Heterocephalus_glaber_male
ENSSHAG00000017072	CHD6	80	74.589	ENSIPUG00000003692	chd6	74	76.568	Ictalurus_punctatus
ENSSHAG00000017072	CHD6	100	79.640	ENSSTOG00000013382	CHD6	100	79.127	Ictidomys_tridecemlineatus
ENSSHAG00000017072	CHD6	83	77.882	ENSLACG00000010881	CHD6	86	77.900	Latimeria_chalumnae
ENSSHAG00000017072	CHD6	73	80.461	ENSLOCG00000007386	chd6	85	75.588	Lepisosteus_oculatus
ENSSHAG00000017072	CHD6	99	80.800	ENSLAFG00000012144	CHD6	100	79.948	Loxodonta_africana
ENSSHAG00000017072	CHD6	100	80.828	ENSMFAG00000032830	CHD6	99	91.560	Macaca_fascicularis
ENSSHAG00000017072	CHD6	100	80.828	ENSMMUG00000020458	CHD6	99	91.560	Macaca_mulatta
ENSSHAG00000017072	CHD6	100	80.792	ENSMNEG00000040847	CHD6	99	91.560	Macaca_nemestrina
ENSSHAG00000017072	CHD6	99	81.119	ENSMLEG00000031965	CHD6	99	91.560	Mandrillus_leucophaeus
ENSSHAG00000017072	CHD6	76	75.862	ENSMAMG00000013111	chd6	64	75.862	Mastacembelus_armatus
ENSSHAG00000017072	CHD6	99	74.367	ENSMGAG00000001121	CHD6	99	74.431	Meleagris_gallopavo
ENSSHAG00000017072	CHD6	100	80.425	ENSMICG00000016641	CHD6	99	91.193	Microcebus_murinus
ENSSHAG00000017072	CHD6	89	94.559	ENSMODG00000000720	-	100	94.559	Monodelphis_domestica
ENSSHAG00000017072	CHD6	100	77.219	MGP_CAROLIEiJ_G0024604	Chd6	100	88.533	Mus_caroli
ENSSHAG00000017072	CHD6	100	77.219	ENSMUSG00000057133	Chd6	100	88.364	Mus_musculus
ENSSHAG00000017072	CHD6	100	77.293	MGP_PahariEiJ_G0026048	Chd6	100	88.786	Mus_pahari
ENSSHAG00000017072	CHD6	100	77.183	MGP_SPRETEiJ_G0025526	Chd6	100	88.449	Mus_spretus
ENSSHAG00000017072	CHD6	99	79.194	ENSMPUG00000017695	CHD6	99	78.864	Mustela_putorius_furo
ENSSHAG00000017072	CHD6	99	79.699	ENSMLUG00000016247	CHD6	99	79.222	Myotis_lucifugus
ENSSHAG00000017072	CHD6	78	72.862	ENSNBRG00000013839	chd6	79	73.360	Neolamprologus_brichardi
ENSSHAG00000017072	CHD6	99	79.396	ENSNLEG00000006496	CHD6	99	78.684	Nomascus_leucogenys
ENSSHAG00000017072	CHD6	100	76.412	ENSOPRG00000013376	-	100	75.862	Ochotona_princeps
ENSSHAG00000017072	CHD6	82	74.744	ENSONIG00000000393	chd6	83	74.935	Oreochromis_niloticus
ENSSHAG00000017072	CHD6	100	72.269	ENSOANG00000014347	CHD6	99	71.616	Ornithorhynchus_anatinus
ENSSHAG00000017072	CHD6	99	78.104	ENSOCUG00000012394	CHD6	99	77.553	Oryctolagus_cuniculus
ENSSHAG00000017072	CHD6	74	75.017	ENSORLG00020021891	chd6	95	85.772	Oryzias_latipes_hni
ENSSHAG00000017072	CHD6	99	79.446	ENSOGAG00000002427	CHD6	99	78.756	Otolemur_garnettii
ENSSHAG00000017072	CHD6	99	75.954	ENSOARG00000002597	CHD6	99	75.477	Ovis_aries
ENSSHAG00000017072	CHD6	99	80.088	ENSPPRG00000014756	CHD6	99	79.684	Panthera_pardus
ENSSHAG00000017072	CHD6	99	80.015	ENSPTIG00000011094	CHD6	99	79.611	Panthera_tigris_altaica
ENSSHAG00000017072	CHD6	100	80.601	ENSPTRG00000013504	CHD6	99	91.560	Pan_troglodytes
ENSSHAG00000017072	CHD6	100	80.828	ENSPANG00000025554	CHD6	99	91.743	Papio_anubis
ENSSHAG00000017072	CHD6	81	73.620	ENSPKIG00000005578	chd6	80	72.970	Paramormyrops_kingsleyae
ENSSHAG00000017072	CHD6	77	76.901	ENSPMGG00000014877	chd6	86	75.447	Periophthalmus_magnuspinnatus
ENSSHAG00000017072	CHD6	99	94.877	ENSPCIG00000028037	CHD6	99	94.877	Phascolarctos_cinereus
ENSSHAG00000017072	CHD6	78	69.479	ENSPLAG00000003128	chd6	68	72.873	Poecilia_latipinna
ENSSHAG00000017072	CHD6	73	72.623	ENSPREG00000022653	chd6	99	86.081	Poecilia_reticulata
ENSSHAG00000017072	CHD6	100	80.469	ENSPPYG00000011016	CHD6	100	79.956	Pongo_abelii
ENSSHAG00000017072	CHD6	99	80.242	ENSPCOG00000001089	CHD6	99	91.376	Propithecus_coquereli
ENSSHAG00000017072	CHD6	78	73.958	ENSPNYG00000022516	chd6	79	74.869	Pundamilia_nyererei
ENSSHAG00000017072	CHD6	78	73.897	ENSPNAG00000012825	chd6	76	74.755	Pygocentrus_nattereri
ENSSHAG00000017072	CHD6	100	76.529	ENSRNOG00000016744	Chd6	100	75.897	Rattus_norvegicus
ENSSHAG00000017072	CHD6	100	80.169	ENSSBOG00000022089	CHD6	99	91.560	Saimiri_boliviensis_boliviensis
ENSSHAG00000017072	CHD6	78	76.654	ENSSFOG00015012920	chd6	76	77.255	Scleropages_formosus
ENSSHAG00000017072	CHD6	58	98.026	ENSSARG00000002615	-	60	98.026	Sorex_araneus
ENSSHAG00000017072	CHD6	99	79.361	ENSSSCG00000007360	CHD6	100	80.645	Sus_scrofa
ENSSHAG00000017072	CHD6	91	81.519	ENSTGUG00000003179	CHD6	93	81.855	Taeniopygia_guttata
ENSSHAG00000017072	CHD6	75	77.153	ENSTNIG00000017487	chd6	83	75.363	Tetraodon_nigroviridis
ENSSHAG00000017072	CHD6	99	76.751	ENSTTRG00000013438	CHD6	99	76.274	Tursiops_truncatus
ENSSHAG00000017072	CHD6	99	79.153	ENSUAMG00000024036	CHD6	95	94.208	Ursus_americanus
ENSSHAG00000017072	CHD6	99	80.398	ENSUMAG00000002017	CHD6	95	94.208	Ursus_maritimus
ENSSHAG00000017072	CHD6	94	84.142	ENSVPAG00000007941	CHD6	96	84.142	Vicugna_pacos
ENSSHAG00000017072	CHD6	99	80.345	ENSVVUG00000029164	CHD6	99	79.941	Vulpes_vulpes
ENSSHAG00000017072	CHD6	88	72.069	ENSXETG00000021445	chd6	88	71.823	Xenopus_tropicalis