EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSHAG00000017260 (Gene tree)
Gene ID: 100913641
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 14106 bases
Position: chrGL834709.1:2596808-2610913
Accession: 100913641
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000020348	LSM	PF01423.22	1.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000020509	LSM1-201	402	-	ENSSHAP00000020348	133 (aa)	XP_003758025	G3WY43

Gene Model

Click here to download ENSSHAG00000017260's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000017260's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSHAG00000017260	LSM1	65	34.091	ENSSHAG00000018435	-	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000017260	LSM1	100	97.744	ENSG00000175324	LSM1	100	97.744	Homo_sapiens
ENSSHAG00000017260	LSM1	100	86.466	ENSAPOG00000010833	lsm1	100	86.466	Acanthochromis_polyacanthus
ENSSHAG00000017260	LSM1	100	97.744	ENSAMEG00000011141	LSM1	100	97.744	Ailuropoda_melanoleuca
ENSSHAG00000017260	LSM1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSSHAG00000017260	LSM1	100	86.466	ENSAOCG00000017997	-	100	86.466	Amphiprion_ocellaris
ENSSHAG00000017260	LSM1	100	86.466	ENSAOCG00000017096	lsm1	100	86.466	Amphiprion_ocellaris
ENSSHAG00000017260	LSM1	100	86.466	ENSAPEG00000011669	lsm1	100	86.466	Amphiprion_percula
ENSSHAG00000017260	LSM1	100	84.962	ENSATEG00000022266	lsm1	100	84.962	Anabas_testudineus
ENSSHAG00000017260	LSM1	100	97.744	ENSANAG00000027785	LSM1	100	97.744	Aotus_nancymaae
ENSSHAG00000017260	LSM1	100	84.962	ENSACLG00000011400	lsm1	100	84.962	Astatotilapia_calliptera
ENSSHAG00000017260	LSM1	100	87.970	ENSAMXG00000005441	lsm1	100	87.970	Astyanax_mexicanus
ENSSHAG00000017260	LSM1	100	96.992	ENSBTAG00000001612	LSM1	100	96.992	Bos_taurus
ENSSHAG00000017260	LSM1	87	51.695	WBGene00003076	lsm-1	90	51.695	Caenorhabditis_elegans
ENSSHAG00000017260	LSM1	100	96.992	ENSCJAG00000048015	LSM1	100	96.992	Callithrix_jacchus
ENSSHAG00000017260	LSM1	100	97.744	ENSCAFG00000006113	LSM1	100	97.744	Canis_familiaris
ENSSHAG00000017260	LSM1	100	97.744	ENSCAFG00020001822	LSM1	100	97.744	Canis_lupus_dingo
ENSSHAG00000017260	LSM1	100	97.744	ENSCHIG00000013194	LSM1	100	97.744	Capra_hircus
ENSSHAG00000017260	LSM1	100	97.744	ENSTSYG00000010394	LSM1	100	97.744	Carlito_syrichta
ENSSHAG00000017260	LSM1	100	97.744	ENSCPOG00000032671	LSM1	100	97.744	Cavia_porcellus
ENSSHAG00000017260	LSM1	100	97.744	ENSCCAG00000037171	LSM1	100	97.744	Cebus_capucinus
ENSSHAG00000017260	LSM1	100	97.744	ENSCATG00000020377	LSM1	100	97.744	Cercocebus_atys
ENSSHAG00000017260	LSM1	100	96.241	ENSCLAG00000001137	LSM1	100	96.241	Chinchilla_lanigera
ENSSHAG00000017260	LSM1	100	97.744	ENSCSAG00000015485	LSM1	100	97.744	Chlorocebus_sabaeus
ENSSHAG00000017260	LSM1	100	96.992	ENSCHOG00000006030	LSM1	100	96.992	Choloepus_hoffmanni
ENSSHAG00000017260	LSM1	95	91.339	ENSCPBG00000006569	LSM1	86	91.339	Chrysemys_picta_bellii
ENSSHAG00000017260	LSM1	99	69.697	ENSCING00000013536	-	99	69.697	Ciona_intestinalis
ENSSHAG00000017260	LSM1	100	97.744	ENSCANG00000019173	LSM1	100	97.744	Colobus_angolensis_palliatus
ENSSHAG00000017260	LSM1	80	80.180	ENSCGRG00001002259	-	97	80.180	Cricetulus_griseus_chok1gshd
ENSSHAG00000017260	LSM1	100	96.992	ENSCGRG00001024560	-	100	96.992	Cricetulus_griseus_chok1gshd
ENSSHAG00000017260	LSM1	100	96.992	ENSCGRG00000006554	-	100	96.992	Cricetulus_griseus_crigri
ENSSHAG00000017260	LSM1	80	80.180	ENSCGRG00000013603	-	97	80.180	Cricetulus_griseus_crigri
ENSSHAG00000017260	LSM1	100	83.459	ENSCSEG00000008319	lsm1	92	83.459	Cynoglossus_semilaevis
ENSSHAG00000017260	LSM1	100	84.211	ENSCSEG00000010570	lsm1	92	84.211	Cynoglossus_semilaevis
ENSSHAG00000017260	LSM1	100	84.211	ENSCVAG00000003871	lsm1	100	84.211	Cyprinodon_variegatus
ENSSHAG00000017260	LSM1	100	87.218	ENSDARG00000043177	lsm1	100	87.218	Danio_rerio
ENSSHAG00000017260	LSM1	100	97.744	ENSDNOG00000046387	-	100	97.744	Dasypus_novemcinctus
ENSSHAG00000017260	LSM1	89	77.311	ENSDNOG00000046620	-	100	77.311	Dasypus_novemcinctus
ENSSHAG00000017260	LSM1	100	91.729	ENSDNOG00000030989	-	100	91.729	Dasypus_novemcinctus
ENSSHAG00000017260	LSM1	100	96.992	ENSDNOG00000032911	-	100	96.992	Dasypus_novemcinctus
ENSSHAG00000017260	LSM1	100	97.744	ENSDORG00000028172	Lsm1	100	97.744	Dipodomys_ordii
ENSSHAG00000017260	LSM1	93	66.129	FBgn0261067	LSm1	91	66.129	Drosophila_melanogaster
ENSSHAG00000017260	LSM1	100	96.241	ENSEASG00005016677	LSM1	100	96.241	Equus_asinus_asinus
ENSSHAG00000017260	LSM1	100	96.241	ENSECAG00000010461	LSM1	100	96.241	Equus_caballus
ENSSHAG00000017260	LSM1	100	69.173	ENSEEUG00000015181	LSM1	100	69.173	Erinaceus_europaeus
ENSSHAG00000017260	LSM1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSSHAG00000017260	LSM1	100	85.714	ENSELUG00000002322	lsm1	100	85.714	Esox_lucius
ENSSHAG00000017260	LSM1	100	97.744	ENSFCAG00000039335	LSM1	100	97.744	Felis_catus
ENSSHAG00000017260	LSM1	89	95.763	ENSFALG00000006723	LSM1	100	95.763	Ficedula_albicollis
ENSSHAG00000017260	LSM1	100	97.744	ENSFDAG00000007658	LSM1	100	97.744	Fukomys_damarensis
ENSSHAG00000017260	LSM1	100	84.211	ENSFHEG00000009556	lsm1	100	84.211	Fundulus_heteroclitus
ENSSHAG00000017260	LSM1	100	82.707	ENSGMOG00000016651	lsm1	98	82.707	Gadus_morhua
ENSSHAG00000017260	LSM1	100	93.985	ENSGALG00000003245	LSM1	100	93.985	Gallus_gallus
ENSSHAG00000017260	LSM1	100	84.211	ENSGAFG00000011355	lsm1	100	84.211	Gambusia_affinis
ENSSHAG00000017260	LSM1	100	84.962	ENSGACG00000011763	lsm1	98	84.962	Gasterosteus_aculeatus
ENSSHAG00000017260	LSM1	100	97.744	ENSGAGG00000024065	LSM1	100	97.744	Gopherus_agassizii
ENSSHAG00000017260	LSM1	100	97.744	ENSGGOG00000022658	LSM1	100	97.744	Gorilla_gorilla
ENSSHAG00000017260	LSM1	100	84.962	ENSHBUG00000010897	lsm1	100	84.962	Haplochromis_burtoni
ENSSHAG00000017260	LSM1	100	77.444	ENSHGLG00000017574	-	100	77.444	Heterocephalus_glaber_female
ENSSHAG00000017260	LSM1	100	97.744	ENSHGLG00000005711	LSM1	100	97.744	Heterocephalus_glaber_female
ENSSHAG00000017260	LSM1	100	97.744	ENSHGLG00100017660	LSM1	100	97.744	Heterocephalus_glaber_male
ENSSHAG00000017260	LSM1	100	77.444	ENSHGLG00100012152	-	100	77.444	Heterocephalus_glaber_male
ENSSHAG00000017260	LSM1	100	84.962	ENSHCOG00000017233	lsm1	100	84.962	Hippocampus_comes
ENSSHAG00000017260	LSM1	100	86.466	ENSIPUG00000002312	LSM1	100	86.466	Ictalurus_punctatus
ENSSHAG00000017260	LSM1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSSHAG00000017260	LSM1	100	96.241	ENSJJAG00000014605	-	100	96.241	Jaculus_jaculus
ENSSHAG00000017260	LSM1	100	84.962	ENSKMAG00000003016	lsm1	100	84.962	Kryptolebias_marmoratus
ENSSHAG00000017260	LSM1	100	84.962	ENSLBEG00000022352	lsm1	100	84.962	Labrus_bergylta
ENSSHAG00000017260	LSM1	89	91.525	ENSLACG00000010947	LSM1	98	91.525	Latimeria_chalumnae
ENSSHAG00000017260	LSM1	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSSHAG00000017260	LSM1	100	97.744	ENSLAFG00000003534	LSM1	100	97.744	Loxodonta_africana
ENSSHAG00000017260	LSM1	100	97.744	ENSMFAG00000032661	LSM1	100	97.744	Macaca_fascicularis
ENSSHAG00000017260	LSM1	100	97.744	ENSMLEG00000034535	LSM1	100	97.744	Mandrillus_leucophaeus
ENSSHAG00000017260	LSM1	100	84.962	ENSMAMG00000007464	lsm1	100	84.962	Mastacembelus_armatus
ENSSHAG00000017260	LSM1	100	84.962	ENSMZEG00005010321	lsm1	100	84.962	Maylandia_zebra
ENSSHAG00000017260	LSM1	100	93.985	ENSMGAG00000002125	LSM1	100	93.985	Meleagris_gallopavo
ENSSHAG00000017260	LSM1	100	96.992	ENSMICG00000030726	LSM1	100	96.992	Microcebus_murinus
ENSSHAG00000017260	LSM1	100	96.992	ENSMOCG00000022817	Lsm1	100	96.992	Microtus_ochrogaster
ENSSHAG00000017260	LSM1	100	85.714	ENSMMOG00000015466	lsm1	100	85.714	Mola_mola
ENSSHAG00000017260	LSM1	100	100.000	ENSMODG00000010732	-	100	100.000	Monodelphis_domestica
ENSSHAG00000017260	LSM1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSSHAG00000017260	LSM1	100	95.489	MGP_CAROLIEiJ_G0030930	Lsm1	100	95.489	Mus_caroli
ENSSHAG00000017260	LSM1	100	95.489	ENSMUSG00000037296	Lsm1	100	95.489	Mus_musculus
ENSSHAG00000017260	LSM1	100	95.489	MGP_PahariEiJ_G0021400	Lsm1	100	95.489	Mus_pahari
ENSSHAG00000017260	LSM1	100	95.489	MGP_SPRETEiJ_G0032049	Lsm1	100	95.489	Mus_spretus
ENSSHAG00000017260	LSM1	100	98.496	ENSMPUG00000009883	LSM1	100	98.496	Mustela_putorius_furo
ENSSHAG00000017260	LSM1	100	96.992	ENSMLUG00000003734	LSM1	100	96.992	Myotis_lucifugus
ENSSHAG00000017260	LSM1	100	96.992	ENSNGAG00000003753	Lsm1	100	96.992	Nannospalax_galili
ENSSHAG00000017260	LSM1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSSHAG00000017260	LSM1	100	97.744	ENSNLEG00000029390	LSM1	100	97.744	Nomascus_leucogenys
ENSSHAG00000017260	LSM1	100	100.000	ENSMEUG00000014077	LSM1	100	100.000	Notamacropus_eugenii
ENSSHAG00000017260	LSM1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSSHAG00000017260	LSM1	100	97.744	ENSODEG00000004834	LSM1	100	97.744	Octodon_degus
ENSSHAG00000017260	LSM1	100	84.962	ENSONIG00000010782	lsm1	100	84.962	Oreochromis_niloticus
ENSSHAG00000017260	LSM1	100	99.248	ENSOANG00000003256	LSM1	100	99.248	Ornithorhynchus_anatinus
ENSSHAG00000017260	LSM1	100	97.744	ENSOCUG00000015399	LSM1	100	97.744	Oryctolagus_cuniculus
ENSSHAG00000017260	LSM1	100	86.466	ENSORLG00000030288	lsm1	100	86.466	Oryzias_latipes
ENSSHAG00000017260	LSM1	100	86.466	ENSORLG00020003941	lsm1	100	86.466	Oryzias_latipes_hni
ENSSHAG00000017260	LSM1	100	84.962	ENSORLG00020006213	-	86	84.962	Oryzias_latipes_hni
ENSSHAG00000017260	LSM1	100	86.466	ENSORLG00015018350	lsm1	100	86.466	Oryzias_latipes_hsok
ENSSHAG00000017260	LSM1	100	84.962	ENSOMEG00000012454	lsm1	100	84.962	Oryzias_melastigma
ENSSHAG00000017260	LSM1	100	97.744	ENSOGAG00000015161	LSM1	100	97.744	Otolemur_garnettii
ENSSHAG00000017260	LSM1	100	97.744	ENSOARG00000001317	LSM1	100	97.744	Ovis_aries
ENSSHAG00000017260	LSM1	100	97.744	ENSPPAG00000032279	LSM1	100	97.744	Pan_paniscus
ENSSHAG00000017260	LSM1	100	97.744	ENSPPRG00000014172	-	100	97.744	Panthera_pardus
ENSSHAG00000017260	LSM1	100	97.744	ENSPTIG00000010289	LSM1	100	97.744	Panthera_tigris_altaica
ENSSHAG00000017260	LSM1	100	97.744	ENSPTRG00000020169	LSM1	100	97.744	Pan_troglodytes
ENSSHAG00000017260	LSM1	100	97.744	ENSPANG00000008814	LSM1	100	97.744	Papio_anubis
ENSSHAG00000017260	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSSHAG00000017260	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSSHAG00000017260	LSM1	98	91.538	ENSPSIG00000012563	LSM1	99	91.538	Pelodiscus_sinensis
ENSSHAG00000017260	LSM1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSSHAG00000017260	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSSHAG00000017260	LSM1	100	98.496	ENSPCIG00000008880	LSM1	100	98.496	Phascolarctos_cinereus
ENSSHAG00000017260	LSM1	100	84.211	ENSPFOG00000016029	lsm1	100	84.211	Poecilia_formosa
ENSSHAG00000017260	LSM1	100	84.211	ENSPLAG00000007879	lsm1	100	84.211	Poecilia_latipinna
ENSSHAG00000017260	LSM1	100	84.211	ENSPMEG00000023550	lsm1	100	84.211	Poecilia_mexicana
ENSSHAG00000017260	LSM1	100	84.211	ENSPREG00000009574	lsm1	100	84.211	Poecilia_reticulata
ENSSHAG00000017260	LSM1	100	97.744	ENSPPYG00000018521	LSM1	100	97.744	Pongo_abelii
ENSSHAG00000017260	LSM1	100	97.744	ENSPCOG00000020901	-	100	97.744	Propithecus_coquereli
ENSSHAG00000017260	LSM1	100	97.744	ENSPVAG00000006016	LSM1	100	97.744	Pteropus_vampyrus
ENSSHAG00000017260	LSM1	100	84.962	ENSPNYG00000018067	lsm1	100	84.962	Pundamilia_nyererei
ENSSHAG00000017260	LSM1	100	87.218	ENSPNAG00000013707	lsm1	100	87.218	Pygocentrus_nattereri
ENSSHAG00000017260	LSM1	100	95.489	ENSRNOG00000015375	Lsm1	100	95.489	Rattus_norvegicus
ENSSHAG00000017260	LSM1	100	97.744	ENSRBIG00000027449	LSM1	100	97.744	Rhinopithecus_bieti
ENSSHAG00000017260	LSM1	100	97.744	ENSRROG00000036074	LSM1	100	97.744	Rhinopithecus_roxellana
ENSSHAG00000017260	LSM1	83	45.299	YJL124C	LSM1	67	45.299	Saccharomyces_cerevisiae
ENSSHAG00000017260	LSM1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSSHAG00000017260	LSM1	100	84.962	ENSSMAG00000004930	lsm1	100	84.962	Scophthalmus_maximus
ENSSHAG00000017260	LSM1	100	84.962	ENSSDUG00000021823	lsm1	100	84.962	Seriola_dumerili
ENSSHAG00000017260	LSM1	100	84.962	ENSSLDG00000012154	lsm1	100	84.962	Seriola_lalandi_dorsalis
ENSSHAG00000017260	LSM1	100	97.744	ENSSPUG00000014878	LSM1	100	97.744	Sphenodon_punctatus
ENSSHAG00000017260	LSM1	100	85.714	ENSSPAG00000020548	lsm1	100	85.714	Stegastes_partitus
ENSSHAG00000017260	LSM1	100	96.241	ENSSSCG00000039058	LSM1	100	96.241	Sus_scrofa
ENSSHAG00000017260	LSM1	100	96.992	ENSTGUG00000004793	LSM1	100	96.992	Taeniopygia_guttata
ENSSHAG00000017260	LSM1	100	87.218	ENSTRUG00000025239	lsm1	100	87.218	Takifugu_rubripes
ENSSHAG00000017260	LSM1	100	87.218	ENSTNIG00000004055	lsm1	100	87.218	Tetraodon_nigroviridis
ENSSHAG00000017260	LSM1	88	95.726	ENSTBEG00000015884	LSM1	100	95.726	Tupaia_belangeri
ENSSHAG00000017260	LSM1	100	97.744	ENSTTRG00000004482	LSM1	100	97.744	Tursiops_truncatus
ENSSHAG00000017260	LSM1	100	97.744	ENSUAMG00000004103	LSM1	100	97.744	Ursus_americanus
ENSSHAG00000017260	LSM1	100	97.744	ENSUMAG00000009132	LSM1	100	97.744	Ursus_maritimus
ENSSHAG00000017260	LSM1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSSHAG00000017260	LSM1	100	97.744	ENSVVUG00000020191	LSM1	100	97.744	Vulpes_vulpes
ENSSHAG00000017260	LSM1	65	68.605	ENSVVUG00000014880	-	91	68.605	Vulpes_vulpes
ENSSHAG00000017260	LSM1	100	94.161	ENSXETG00000009004	lsm1	100	94.161	Xenopus_tropicalis
ENSSHAG00000017260	LSM1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSSHAG00000017260	LSM1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus