EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSHAG00000017564 (Gene tree)
Gene ID: 100916978
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Sarcophilus_harrisii
Status: putative
Strand: Minus strand
Length: 49959 bases
Position: chrGL849652.1:2810765-2860723
Accession: 100916978
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSHAP00000020711	SF3b1	PF08920.10	3.1e-47	1	1
ENSSHAP00000020710	SF3b1	PF08920.10	4.9e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSHAT00000020877	SF3B1-202	6293	-	ENSSHAP00000020711	1304 (aa)	-	G3WZ56
ENSSHAT00000020876	SF3B1-201	7128	-	ENSSHAP00000020710	1303 (aa)	XP_003764117	G3WZ55

Gene Model

Click here to download ENSSHAG00000017564's gene model file

Pathways

Pathway ID	Pathway Name	Source
shr03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSHAG00000017564's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSHAG00000017564	SF3B1	100	99.310	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSSHAG00000017564	SF3B1	100	92.938	ENSAPOG00000011894	sf3b1	100	92.938	Acanthochromis_polyacanthus
ENSSHAG00000017564	SF3B1	99	99.228	ENSAMEG00000013809	SF3B1	99	99.228	Ailuropoda_melanoleuca
ENSSHAG00000017564	SF3B1	100	92.607	ENSACIG00000020910	sf3b1	97	92.454	Amphilophus_citrinellus
ENSSHAG00000017564	SF3B1	100	93.090	ENSAOCG00000004478	sf3b1	100	93.090	Amphiprion_ocellaris
ENSSHAG00000017564	SF3B1	100	93.090	ENSAPEG00000012937	sf3b1	100	93.090	Amphiprion_percula
ENSSHAG00000017564	SF3B1	100	93.237	ENSATEG00000020435	sf3b1	100	93.237	Anabas_testudineus
ENSSHAG00000017564	SF3B1	99	98.995	ENSAPLG00000003993	SF3B1	99	98.995	Anas_platyrhynchos
ENSSHAG00000017564	SF3B1	100	98.619	ENSACAG00000009612	SF3B1	100	98.619	Anolis_carolinensis
ENSSHAG00000017564	SF3B1	100	99.310	ENSANAG00000021577	SF3B1	100	99.655	Aotus_nancymaae
ENSSHAG00000017564	SF3B1	100	92.249	ENSACLG00000023470	sf3b1	100	92.097	Astatotilapia_calliptera
ENSSHAG00000017564	SF3B1	100	93.693	ENSAMXG00000002219	sf3b1	100	93.541	Astyanax_mexicanus
ENSSHAG00000017564	SF3B1	100	99.233	ENSBTAG00000008915	SF3B1	100	99.233	Bos_taurus
ENSSHAG00000017564	SF3B1	98	66.466	WBGene00011605	sftb-1	98	66.541	Caenorhabditis_elegans
ENSSHAG00000017564	SF3B1	100	99.310	ENSCJAG00000003902	SF3B1	100	99.310	Callithrix_jacchus
ENSSHAG00000017564	SF3B1	100	99.310	ENSCAFG00000010826	SF3B1	100	99.310	Canis_familiaris
ENSSHAG00000017564	SF3B1	100	99.310	ENSCAFG00020004750	SF3B1	100	99.310	Canis_lupus_dingo
ENSSHAG00000017564	SF3B1	100	99.233	ENSCHIG00000015226	SF3B1	100	99.233	Capra_hircus
ENSSHAG00000017564	SF3B1	100	99.233	ENSTSYG00000009214	SF3B1	100	99.233	Carlito_syrichta
ENSSHAG00000017564	SF3B1	99	99.154	ENSCAPG00000006547	SF3B1	99	99.154	Cavia_aperea
ENSSHAG00000017564	SF3B1	99	99.304	ENSCPOG00000009353	SF3B1	100	99.304	Cavia_porcellus
ENSSHAG00000017564	SF3B1	100	99.310	ENSCCAG00000020506	SF3B1	100	99.310	Cebus_capucinus
ENSSHAG00000017564	SF3B1	100	99.310	ENSCATG00000035735	SF3B1	100	99.310	Cercocebus_atys
ENSSHAG00000017564	SF3B1	99	99.305	ENSCLAG00000014767	SF3B1	99	99.305	Chinchilla_lanigera
ENSSHAG00000017564	SF3B1	100	99.310	ENSCSAG00000011505	SF3B1	100	99.310	Chlorocebus_sabaeus
ENSSHAG00000017564	SF3B1	76	96.923	ENSCHOG00000009860	SF3B1	76	96.875	Choloepus_hoffmanni
ENSSHAG00000017564	SF3B1	100	99.002	ENSCPBG00000021902	SF3B1	100	99.002	Chrysemys_picta_bellii
ENSSHAG00000017564	SF3B1	68	77.778	ENSCING00000002558	-	99	78.707	Ciona_intestinalis
ENSSHAG00000017564	SF3B1	100	79.063	ENSCSAVG00000002559	-	100	78.744	Ciona_savignyi
ENSSHAG00000017564	SF3B1	100	99.310	ENSCANG00000029415	SF3B1	100	99.310	Colobus_angolensis_palliatus
ENSSHAG00000017564	SF3B1	100	99.310	ENSCGRG00001016990	Sf3b1	100	99.310	Cricetulus_griseus_chok1gshd
ENSSHAG00000017564	SF3B1	100	99.310	ENSCGRG00000005301	Sf3b1	100	99.310	Cricetulus_griseus_crigri
ENSSHAG00000017564	SF3B1	100	89.482	ENSCSEG00000003860	sf3b1	100	89.329	Cynoglossus_semilaevis
ENSSHAG00000017564	SF3B1	96	93.123	ENSCVAG00000003680	sf3b1	99	93.123	Cyprinodon_variegatus
ENSSHAG00000017564	SF3B1	100	93.014	ENSDARG00000056138	sf3b1	100	92.938	Danio_rerio
ENSSHAG00000017564	SF3B1	100	99.234	ENSDNOG00000011754	SF3B1	100	99.234	Dasypus_novemcinctus
ENSSHAG00000017564	SF3B1	99	96.911	ENSDORG00000002399	Sf3b1	100	96.911	Dipodomys_ordii
ENSSHAG00000017564	SF3B1	100	76.471	FBgn0031266	Sf3b1	100	76.471	Drosophila_melanogaster
ENSSHAG00000017564	SF3B1	83	98.609	ENSETEG00000009188	SF3B1	100	98.609	Echinops_telfairi
ENSSHAG00000017564	SF3B1	99	87.030	ENSEBUG00000004325	sf3b1	100	90.017	Eptatretus_burgeri
ENSSHAG00000017564	SF3B1	100	99.310	ENSEASG00005020159	SF3B1	98	99.310	Equus_asinus_asinus
ENSSHAG00000017564	SF3B1	100	99.310	ENSECAG00000021657	SF3B1	98	99.310	Equus_caballus
ENSSHAG00000017564	SF3B1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSSHAG00000017564	SF3B1	100	92.453	ENSELUG00000005977	sf3b1	98	92.528	Esox_lucius
ENSSHAG00000017564	SF3B1	100	99.310	ENSFCAG00000005038	SF3B1	100	99.310	Felis_catus
ENSSHAG00000017564	SF3B1	99	98.918	ENSFALG00000004281	SF3B1	99	98.918	Ficedula_albicollis
ENSSHAG00000017564	SF3B1	100	99.310	ENSFDAG00000017510	SF3B1	100	99.310	Fukomys_damarensis
ENSSHAG00000017564	SF3B1	100	92.407	ENSFHEG00000014333	sf3b1	100	92.407	Fundulus_heteroclitus
ENSSHAG00000017564	SF3B1	100	93.069	ENSGMOG00000006773	sf3b1	100	93.069	Gadus_morhua
ENSSHAG00000017564	SF3B1	100	99.002	ENSGALG00000008038	SF3B1	100	99.002	Gallus_gallus
ENSSHAG00000017564	SF3B1	100	91.457	ENSGAFG00000000704	sf3b1	99	92.984	Gambusia_affinis
ENSSHAG00000017564	SF3B1	100	92.759	ENSGACG00000008839	sf3b1	100	93.216	Gasterosteus_aculeatus
ENSSHAG00000017564	SF3B1	100	98.323	ENSGAGG00000017478	SF3B1	100	98.323	Gopherus_agassizii
ENSSHAG00000017564	SF3B1	99	92.325	ENSGGOG00000009264	SF3B1	99	93.538	Gorilla_gorilla
ENSSHAG00000017564	SF3B1	99	92.314	ENSHBUG00000007705	sf3b1	99	92.161	Haplochromis_burtoni
ENSSHAG00000017564	SF3B1	99	99.305	ENSHGLG00000008285	-	99	99.305	Heterocephalus_glaber_female
ENSSHAG00000017564	SF3B1	99	97.297	ENSHGLG00100005535	-	99	97.297	Heterocephalus_glaber_male
ENSSHAG00000017564	SF3B1	100	92.372	ENSHCOG00000016775	sf3b1	100	92.296	Hippocampus_comes
ENSSHAG00000017564	SF3B1	100	93.465	ENSIPUG00000013171	sf3b1	100	93.465	Ictalurus_punctatus
ENSSHAG00000017564	SF3B1	100	99.310	ENSSTOG00000011034	SF3B1	100	99.310	Ictidomys_tridecemlineatus
ENSSHAG00000017564	SF3B1	99	99.225	ENSJJAG00000010903	Sf3b1	99	99.225	Jaculus_jaculus
ENSSHAG00000017564	SF3B1	100	92.500	ENSKMAG00000004009	sf3b1	100	92.500	Kryptolebias_marmoratus
ENSSHAG00000017564	SF3B1	100	93.130	ENSLBEG00000022208	sf3b1	100	92.977	Labrus_bergylta
ENSSHAG00000017564	SF3B1	99	91.954	ENSLACG00000014832	SF3B1	99	91.954	Latimeria_chalumnae
ENSSHAG00000017564	SF3B1	100	94.461	ENSLOCG00000003899	sf3b1	100	94.310	Lepisosteus_oculatus
ENSSHAG00000017564	SF3B1	100	99.310	ENSLAFG00000001956	SF3B1	100	99.310	Loxodonta_africana
ENSSHAG00000017564	SF3B1	99	99.305	ENSMMUG00000022430	SF3B1	99	99.305	Macaca_mulatta
ENSSHAG00000017564	SF3B1	100	99.310	ENSMNEG00000042333	SF3B1	100	99.655	Macaca_nemestrina
ENSSHAG00000017564	SF3B1	95	92.915	ENSMLEG00000026141	SF3B1	99	93.462	Mandrillus_leucophaeus
ENSSHAG00000017564	SF3B1	100	93.161	ENSMAMG00000010241	sf3b1	100	93.161	Mastacembelus_armatus
ENSSHAG00000017564	SF3B1	100	92.249	ENSMZEG00005021254	sf3b1	100	92.097	Maylandia_zebra
ENSSHAG00000017564	SF3B1	99	98.454	ENSMGAG00000007017	SF3B1	99	98.454	Meleagris_gallopavo
ENSSHAG00000017564	SF3B1	99	95.058	ENSMAUG00000009071	Sf3b1	99	95.058	Mesocricetus_auratus
ENSSHAG00000017564	SF3B1	100	99.233	ENSMICG00000013879	SF3B1	100	99.233	Microcebus_murinus
ENSSHAG00000017564	SF3B1	99	94.830	ENSMOCG00000000455	Sf3b1	99	94.830	Microtus_ochrogaster
ENSSHAG00000017564	SF3B1	83	92.420	ENSMMOG00000000475	sf3b1	100	92.420	Mola_mola
ENSSHAG00000017564	SF3B1	100	100.000	ENSMODG00000012275	SF3B1	100	100.000	Monodelphis_domestica
ENSSHAG00000017564	SF3B1	100	93.085	ENSMALG00000017211	sf3b1	100	93.085	Monopterus_albus
ENSSHAG00000017564	SF3B1	100	99.310	MGP_CAROLIEiJ_G0014141	Sf3b1	100	99.310	Mus_caroli
ENSSHAG00000017564	SF3B1	100	99.310	ENSMUSG00000025982	Sf3b1	100	99.310	Mus_musculus
ENSSHAG00000017564	SF3B1	100	99.310	MGP_SPRETEiJ_G0014947	Sf3b1	100	99.310	Mus_spretus
ENSSHAG00000017564	SF3B1	100	99.310	ENSMPUG00000007799	SF3B1	100	99.310	Mustela_putorius_furo
ENSSHAG00000017564	SF3B1	100	98.083	ENSMLUG00000000840	SF3B1	100	98.083	Myotis_lucifugus
ENSSHAG00000017564	SF3B1	99	99.228	ENSNGAG00000021884	-	100	99.000	Nannospalax_galili
ENSSHAG00000017564	SF3B1	100	88.643	ENSNBRG00000015816	sf3b1	100	88.643	Neolamprologus_brichardi
ENSSHAG00000017564	SF3B1	100	99.310	ENSNLEG00000006861	SF3B1	100	99.310	Nomascus_leucogenys
ENSSHAG00000017564	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSSHAG00000017564	SF3B1	100	87.730	ENSOPRG00000008596	SF3B1	100	87.730	Ochotona_princeps
ENSSHAG00000017564	SF3B1	100	99.310	ENSODEG00000011153	-	100	99.310	Octodon_degus
ENSSHAG00000017564	SF3B1	100	92.249	ENSONIG00000013758	sf3b1	100	92.097	Oreochromis_niloticus
ENSSHAG00000017564	SF3B1	83	98.893	ENSOCUG00000012722	-	96	98.893	Oryctolagus_cuniculus
ENSSHAG00000017564	SF3B1	100	92.781	ENSORLG00000020219	sf3b1	100	92.781	Oryzias_latipes
ENSSHAG00000017564	SF3B1	100	92.781	ENSORLG00020001746	sf3b1	100	92.781	Oryzias_latipes_hni
ENSSHAG00000017564	SF3B1	64	90.119	ENSORLG00015001759	sf3b1	98	90.119	Oryzias_latipes_hsok
ENSSHAG00000017564	SF3B1	100	92.787	ENSOMEG00000019231	sf3b1	100	92.787	Oryzias_melastigma
ENSSHAG00000017564	SF3B1	100	99.233	ENSOARG00000015374	SF3B1	100	99.233	Ovis_aries
ENSSHAG00000017564	SF3B1	100	99.310	ENSPPAG00000035007	SF3B1	100	99.310	Pan_paniscus
ENSSHAG00000017564	SF3B1	100	99.310	ENSPPRG00000009090	SF3B1	100	99.310	Panthera_pardus
ENSSHAG00000017564	SF3B1	100	99.310	ENSPTIG00000021557	SF3B1	100	99.310	Panthera_tigris_altaica
ENSSHAG00000017564	SF3B1	99	90.762	ENSPTRG00000012771	SF3B1	99	90.762	Pan_troglodytes
ENSSHAG00000017564	SF3B1	100	99.310	ENSPANG00000013417	SF3B1	100	99.310	Papio_anubis
ENSSHAG00000017564	SF3B1	100	94.597	ENSPKIG00000000784	sf3b1	100	94.444	Paramormyrops_kingsleyae
ENSSHAG00000017564	SF3B1	99	97.834	ENSPSIG00000017222	SF3B1	98	97.834	Pelodiscus_sinensis
ENSSHAG00000017564	SF3B1	90	93.429	ENSPMGG00000004330	sf3b1	99	93.260	Periophthalmus_magnuspinnatus
ENSSHAG00000017564	SF3B1	99	99.305	ENSPEMG00000010699	Sf3b1	100	99.305	Peromyscus_maniculatus_bairdii
ENSSHAG00000017564	SF3B1	100	89.818	ENSPMAG00000001311	sf3b1	100	89.970	Petromyzon_marinus
ENSSHAG00000017564	SF3B1	100	99.923	ENSPCIG00000010642	SF3B1	100	99.923	Phascolarctos_cinereus
ENSSHAG00000017564	SF3B1	100	92.868	ENSPFOG00000000073	sf3b1	100	92.868	Poecilia_formosa
ENSSHAG00000017564	SF3B1	100	92.938	ENSPLAG00000002293	sf3b1	100	92.938	Poecilia_latipinna
ENSSHAG00000017564	SF3B1	100	92.938	ENSPMEG00000000446	sf3b1	98	92.938	Poecilia_mexicana
ENSSHAG00000017564	SF3B1	100	93.014	ENSPREG00000019652	sf3b1	100	93.014	Poecilia_reticulata
ENSSHAG00000017564	SF3B1	100	98.723	ENSPPYG00000013044	SF3B1	96	98.723	Pongo_abelii
ENSSHAG00000017564	SF3B1	100	99.156	ENSPCAG00000009292	SF3B1	100	99.156	Procavia_capensis
ENSSHAG00000017564	SF3B1	100	99.233	ENSPCOG00000024074	SF3B1	100	99.233	Propithecus_coquereli
ENSSHAG00000017564	SF3B1	100	99.310	ENSPVAG00000008302	SF3B1	100	99.310	Pteropus_vampyrus
ENSSHAG00000017564	SF3B1	100	92.173	ENSPNYG00000014939	sf3b1	100	92.021	Pundamilia_nyererei
ENSSHAG00000017564	SF3B1	100	93.389	ENSPNAG00000008288	sf3b1	100	93.465	Pygocentrus_nattereri
ENSSHAG00000017564	SF3B1	100	99.310	ENSRNOG00000013516	Sf3b1	100	99.310	Rattus_norvegicus
ENSSHAG00000017564	SF3B1	99	95.545	ENSRBIG00000026096	SF3B1	100	95.545	Rhinopithecus_bieti
ENSSHAG00000017564	SF3B1	100	99.310	ENSRROG00000031308	SF3B1	100	99.310	Rhinopithecus_roxellana
ENSSHAG00000017564	SF3B1	100	99.310	ENSSBOG00000020080	SF3B1	100	99.310	Saimiri_boliviensis_boliviensis
ENSSHAG00000017564	SF3B1	100	94.077	ENSSFOG00015021535	sf3b1	100	94.229	Scleropages_formosus
ENSSHAG00000017564	SF3B1	99	92.348	ENSSMAG00000013977	sf3b1	99	92.273	Scophthalmus_maximus
ENSSHAG00000017564	SF3B1	100	93.085	ENSSDUG00000017422	sf3b1	100	93.085	Seriola_dumerili
ENSSHAG00000017564	SF3B1	100	93.009	ENSSLDG00000019495	sf3b1	100	93.009	Seriola_lalandi_dorsalis
ENSSHAG00000017564	SF3B1	76	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSSHAG00000017564	SF3B1	100	98.849	ENSSPUG00000000410	SF3B1	100	98.849	Sphenodon_punctatus
ENSSHAG00000017564	SF3B1	100	93.237	ENSSPAG00000010451	sf3b1	99	93.237	Stegastes_partitus
ENSSHAG00000017564	SF3B1	91	98.907	ENSSSCG00000016075	SF3B1	100	99.655	Sus_scrofa
ENSSHAG00000017564	SF3B1	100	98.926	ENSTGUG00000010553	SF3B1	100	98.926	Taeniopygia_guttata
ENSSHAG00000017564	SF3B1	100	93.085	ENSTRUG00000015534	sf3b1	100	92.933	Takifugu_rubripes
ENSSHAG00000017564	SF3B1	88	99.793	ENSTBEG00000008714	SF3B1	93	99.793	Tupaia_belangeri
ENSSHAG00000017564	SF3B1	92	94.058	ENSTTRG00000003414	SF3B1	92	94.058	Tursiops_truncatus
ENSSHAG00000017564	SF3B1	94	94.362	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSSHAG00000017564	SF3B1	100	99.310	ENSUMAG00000020945	SF3B1	100	99.310	Ursus_maritimus
ENSSHAG00000017564	SF3B1	100	91.181	ENSVPAG00000005798	SF3B1	100	91.181	Vicugna_pacos
ENSSHAG00000017564	SF3B1	100	99.310	ENSVVUG00000025948	SF3B1	95	99.310	Vulpes_vulpes
ENSSHAG00000017564	SF3B1	100	96.245	ENSXETG00000013339	sf3b1	100	96.245	Xenopus_tropicalis
ENSSHAG00000017564	SF3B1	100	89.450	ENSXCOG00000018086	sf3b1	100	89.337	Xiphophorus_couchianus
ENSSHAG00000017564	SF3B1	100	92.938	ENSXMAG00000007369	sf3b1	100	93.154	Xiphophorus_maculatus